Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000713

Physical Location & Seq

Genomic Coordinates Reverse (-)

66113380 .. 66115895

Gene Structure 2516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG491300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGAAATGGCAAGTGATTTTCGGCATTGGGATGAATTAATACCTGAGGCATTGAGTCTGATATTCAACAGCCTTTCTTTTAAGGAGAAGCTAACAGTGATTCCAATGGTTTGCAAACCATGGAGCAAGGCAGTTATGGGGTCTGACTGCTGGCAAGAGATAGACATTGAGGAATGGAGTAATGAATGCCAGCCGCAATACCTGGATCGCATGATTCAAATGCTGGTGGCAAGAAGTTGTGGATCAATGAGAAAGCTGTGTGTTTCCAAACTCCAAAACGACATGATTTTCACCTTCATTGCTGAACATGCTAATACCCTTCAGACCTTGAGACTGCGAAGAAGTCAAATGAGTGATTCAGTGGTAGAACAGACAATTGGAAGGTTTTCTAATATCACCTTCTTGGATCTTAGCTGCTGTGGTAAAATTGGTAGTCGTGCTCTAAAGGCCATTGGAATGAACTGTAAATTGCTCATGGGACTGTGCCGGAACAGATATCCTTGGTACACGGCAGGCATCCTTATGAATTTGAAGAATGAGGCTCATGCCATTGCCACCACAATGCCTAGACTGAAGCACCTTGAGATGGCATACCATCTCATCAACACACAAGAGGCTCTTCAAATACTTGAGAGCTGCCCTGAGCTCGAATTTTTGGATTTGAGAGGATGTTGGGATGTTCAGCTTGATGATAAGTTCTTAGGGGAGAAGTTCCCAAAATTGAAGGTTCTAGGGCCTCCTGCGGACTACTACTATGATGAGGACTTGGAATGTTGCATAAATAACTCAGATGCTTCTTCTGACGGTTCCCCCTTCGAATATGAGGATCTATCTGAGGAATATCTGTCCGATGAGTATTTGTCTGACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

F-box F-box-like LRR_6 Laminin_G_3

Protein Analysis

290

Amino Acids

33.42

Weight (kDa)

4.81

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08980 AT4G08980 AT4G08980 AT4G08980 AT4G08980
fragaria_vesca	FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36840 FvH4_5g36840 FvH4_5g36840
malus_domestica	MD01G1033400.v1.1 MD08G1186500.v1.1 MD15G1372500.v1.1
prunus_persica	Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1
pyrus_communis	pycom01g06090 pycom08g16030 pycom15g33350
rosa_chinensis	RchiOBHm_Chr2g0112771 RchiOBHm_Chr7g0243381 RchiOBHm_Chr7g0243391
rosa_laevigata	RLG00000000850 RLG00000000851 RLG00000018008
rosa_multiflora	Rmu_co8087500.1_g000001 Rmu_sc0001036.1_g000019 Rmu_sc0001036.1_g000027 Rmu_sc0001708.1_g000033 Rmu_sc0004612.1_g000003 Rmu_sc0024527.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131160 Rroxscaffold_3G00222130 Rroxscaffold_3G00222140
rosa_rugosa	Rorug02G0182300 Rorug02G0182400 Rorug02G0182500 Rorug02G0182600 Rorug07G0318700 Rorug07G0318800 Rorug07G0318900 Rorug07G0319000 Rorug07G0319000
rosa_samantha	Rh2AG237000 Rh2BG249900 Rh2CG241000 Rh2DG244500 Rh7AG475000 Rh7AG475100 Rh7BG444900 Rh7BG445000 Rh7CG491200 Rh7CG491300 Rh7DG459500 Rh7DG459600
rosa_wichuraiana	Rw2G018330 Rw7G039500 Rw7G039520 Rw7G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	194, 743
AclWI	GGATC	4 cut(s)	213, 250, 414, 834
AcsI	RAATTY	2 cut(s)	526, 650
AcuI	CTGAAG	2 cut(s)	305, 593
AfaI	GTAC	1 cut(s)	506
AfiI	CCNNNNNNNGG	1 cut(s)	586
AgsI	TTSAA	5 cut(s)	67, 218, 532, 623, 724
AjnI	CCWGG	1 cut(s)	201
AjuI	GAANNNNNNNTTGG	2 cut(s)	360, 392
AluBI	AGCT	6 cut(s)	91, 256, 414, 636, 646, 685
AluI	AGCT	6 cut(s)	91, 256, 414, 636, 646, 685
Alw21I	GWGCWC	2 cut(s)	442, 648
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	4 cut(s)	213, 250, 414, 834
AoxI	GGCC	2 cut(s)	447, 734
ApeKI	GCWGC	2 cut(s)	414, 636
ApoI	RAATTY	2 cut(s)	526, 650
AseI	ATTAAT	1 cut(s)	38
Asp700I	GAANNNNTTC	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	734
AsuHPI	GGTGA	2 cut(s)	283, 388
AsuII	TTCGAA	1 cut(s)	816
AxyI	CCTNAGG	1 cut(s)	45
BanII	GRGCYC	1 cut(s)	648
Bbv12I	GWGCWC	2 cut(s)	442, 648
BbvI	GCAGC	2 cut(s)	401, 623
BccI	CCATC	2 cut(s)	580, 603
BceAI	ACGGC	1 cut(s)	525
BciT130I	CCWGG	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	2 cut(s)	567, 731
BisI	GCNGC	3 cut(s)	194, 415, 637
BlsI	GCNGC	3 cut(s)	195, 416, 638
Bme1390I	CCNGG	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	734
BmiI	GGNNCC	1 cut(s)	808
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	2 cut(s)	525, 781
Bpu10I	CCTNAGC	1 cut(s)	642
Bpu14I	TTCGAA	1 cut(s)	816
BpuEI	CTTGAG	3 cut(s)	349, 602, 650
BsaJI	CCNNGG	2 cut(s)	119, 500
Bsc4I	CCNNNNNNNGG	1 cut(s)	586
Bse21I	CCTNAGG	1 cut(s)	45
Bse3DI	GCAATG	2 cut(s)	297, 549
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	2 cut(s)	119, 500
BseGI	GGATG	4 cut(s)	37, 516, 674, 682
BseLI	CCNNNNNNNGG	1 cut(s)	586
BseMI	GCAATG	2 cut(s)	297, 549
BseMII	CTCAG	4 cut(s)	36, 633, 801, 825
BseXI	GCAGC	2 cut(s)	401, 623
BshFI	GGCC	2 cut(s)	449, 736
BsiHKAI	GWGCWC	2 cut(s)	442, 648
BsiSI	CCGG	1 cut(s)	487
BslFI	GGGAC	1 cut(s)	492
BslI	CCNNNNNNNGG	1 cut(s)	586
BsmAI	GTCTC	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	492
BsmI	GAATGC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	449, 736
Bsp119I	TTCGAA	1 cut(s)	816
Bsp1286I	GDGCHC	2 cut(s)	442, 648
Bsp143I	GATC	4 cut(s)	205, 242, 406, 826
Bsp19I	CCATGG	1 cut(s)	119
BspACI	CCGC	2 cut(s)	194, 743
BspANI	GGCC	2 cut(s)	449, 736
BspCNI	CTCAG	4 cut(s)	37, 634, 800, 826
BspLI	GGNNCC	1 cut(s)	808
BspPI	GGATC	4 cut(s)	213, 250, 414, 834
BspQI	GCTCTTC	1 cut(s)	624
BspT104I	TTCGAA	1 cut(s)	816
BsrDI	GCAATG	2 cut(s)	297, 549
BssECI	CCNNGG	2 cut(s)	119, 500
BssMI	GATC	4 cut(s)	205, 242, 406, 826
BssT1I	CCWWGG	2 cut(s)	119, 500
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	4 cut(s)	97, 464, 483, 806
Bst6I	CTCTTC	1 cut(s)	624
BstBI	TTCGAA	1 cut(s)	816
BstC8I	GCNNGC	3 cut(s)	152, 191, 514
BstDEI	CTNAG	6 cut(s)	45, 410, 642, 700, 787, 834
BstDSI	CCRYGG	1 cut(s)	119
BstF5I	GGATG	4 cut(s)	37, 516, 674, 682
BstKTI	GATC	4 cut(s)	208, 245, 409, 829
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	4 cut(s)	205, 242, 406, 826
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 446
BstNI	CCWGG	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	401, 623
BstX2I	RGATCY	2 cut(s)	406, 826
BstYI	RGATCY	2 cut(s)	406, 826
Bsu36I	CCTNAGG	1 cut(s)	45
BsuRI	GGCC	2 cut(s)	449, 736
BtgI	CCRYGG	1 cut(s)	119
BtsCI	GGATG	4 cut(s)	37, 516, 674, 682
BtsIMutI	CAGTG	2 cut(s)	102, 366
Cac8I	GCNNGC	3 cut(s)	152, 191, 514
Cfr13I	GGNCC	1 cut(s)	734
Csp6I	GTAC	1 cut(s)	505
CviAII	CATG	6 cut(s)	120, 211, 283, 308, 475, 545
CviQI	GTAC	1 cut(s)	505
DdeI	CTNAG	6 cut(s)	45, 410, 642, 700, 787, 834
DpnI	GATC	4 cut(s)	207, 244, 408, 828
DpnII	GATC	4 cut(s)	205, 242, 406, 826
Eam1104I	CTCTTC	1 cut(s)	624
EarI	CTCTTC	1 cut(s)	624
Ecl136II	GAGCTC	1 cut(s)	646
Eco130I	CCWWGG	2 cut(s)	119, 500
Eco24I	GRGCYC	1 cut(s)	648
Eco32I	GATATC	1 cut(s)	497
Eco53kI	GAGCTC	1 cut(s)	646
Eco57I	CTGAAG	2 cut(s)	305, 593
Eco81I	CCTNAGG	1 cut(s)	45
EcoICRI	GAGCTC	1 cut(s)	646
EcoO109I	RGGNCCY	1 cut(s)	734
EcoRII	CCWGG	1 cut(s)	201
EcoRV	GATATC	1 cut(s)	497
EcoT14I	CCWWGG	2 cut(s)	119, 500
EcoT38I	GRGCYC	1 cut(s)	648
ErhI	CCWWGG	2 cut(s)	119, 500
FaeI	CATG	6 cut(s)	123, 214, 286, 311, 478, 548
FalI	AAGNNNNNCTT	2 cut(s)	603, 635
FaqI	GGGAC	1 cut(s)	492
FatI	CATG	6 cut(s)	119, 210, 282, 307, 474, 544
Fnu4HI	GCNGC	3 cut(s)	194, 415, 637
FokI	GGATG	4 cut(s)	44, 503, 681, 689
FriOI	GRGCYC	1 cut(s)	648
Fsp4HI	GCNGC	3 cut(s)	194, 415, 637
FspBI	CTAG	2 cut(s)	567, 731
GluI	GCNGC	3 cut(s)	194, 415, 637
HaeIII	GGCC	2 cut(s)	449, 736
HapII	CCGG	1 cut(s)	487
Hin1II	CATG	6 cut(s)	123, 214, 286, 311, 478, 548
HinfI	GANTC	4 cut(s)	55, 100, 214, 356
HpaII	CCGG	1 cut(s)	487
HphI	GGTGA	2 cut(s)	283, 388
Hpy166II	GTNNAC	1 cut(s)	507
Hpy188I	TCNGA	8 cut(s)	60, 145, 324, 790, 802, 835, 850, 865
Hpy8I	GTNNAC	1 cut(s)	507
HpyAV	CCTTC	6 cut(s)	304, 329, 375, 409, 718, 823
HpyCH4III	ACNGT	4 cut(s)	97, 464, 483, 806
HpyCH4V	TGCA	2 cut(s)	114, 777
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 446
HpyF3I	CTNAG	6 cut(s)	45, 410, 642, 700, 787, 834
Hsp92II	CATG	6 cut(s)	123, 214, 286, 311, 478, 548
Kzo9I	GATC	4 cut(s)	205, 242, 406, 826
LguI	GCTCTTC	1 cut(s)	624
LmnI	GCTCC	1 cut(s)	123
Lsp1109I	GCAGC	2 cut(s)	401, 623
LweI	GCATC	2 cut(s)	525, 781
MaeI	CTAG	2 cut(s)	567, 731
MalI	GATC	4 cut(s)	207, 244, 408, 828
MboI	GATC	4 cut(s)	205, 242, 406, 826
MboII	GAAGA	4 cut(s)	351, 544, 611, 789
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	2 cut(s)	406, 826
MhlI	GDGCHC	2 cut(s)	442, 648
MluCI	AATT	7 cut(s)	35, 375, 426, 467, 526, 650, 719
MlyI	GAGTC	1 cut(s)	64
MnlI	CCTC	9 cut(s)	40, 163, 532, 607, 659, 747, 754, 817, 829
MroXI	GAANNNNTTC	1 cut(s)	385
MseI	TTAA	2 cut(s)	38, 81
MslI	CAYNNNNRTG	4 cut(s)	30, 455, 521, 560
MspI	CCGG	1 cut(s)	487
MspR9I	CCNGG	1 cut(s)	203
MunI	CAATTG	1 cut(s)	375
Mva1269I	GAATGC	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	308, 446
NcoI	CCATGG	1 cut(s)	119
NdeII	GATC	4 cut(s)	205, 242, 406, 826
NlaIII	CATG	6 cut(s)	123, 214, 286, 311, 478, 548
NlaIV	GGNNCC	1 cut(s)	808
NspI	RCATGY	1 cut(s)	311
NspV	TTCGAA	1 cut(s)	816
PciSI	GCTCTTC	1 cut(s)	624
PctI	GAATGC	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	385
PfeI	GAWTC	3 cut(s)	100, 214, 356
PkrI	GCNGC	3 cut(s)	195, 416, 638
PleI	GAGTC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	63
PshBI	ATTAAT	1 cut(s)	38
Psp124BI	GAGCTC	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	808
PspPI	GGNCC	1 cut(s)	734
PsuI	RGATCY	2 cut(s)	406, 826
RsaI	GTAC	1 cut(s)	506
RsaNI	GTAC	1 cut(s)	505
RseI	CAYNNNNRTG	4 cut(s)	30, 455, 521, 560
SacI	GAGCTC	1 cut(s)	648
SapI	GCTCTTC	1 cut(s)	624
SaqAI	TTAA	2 cut(s)	38, 81
SatI	GCNGC	3 cut(s)	194, 415, 637
Sau3AI	GATC	4 cut(s)	205, 242, 406, 826
Sau96I	GGNCC	1 cut(s)	734
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	203
SduI	GDGCHC	2 cut(s)	442, 648
SfaNI	GCATC	2 cut(s)	525, 781
SfuI	TTCGAA	1 cut(s)	816
SmiMI	CAYNNNNRTG	4 cut(s)	30, 455, 521, 560
SmlI	CTYRAG	3 cut(s)	328, 581, 629
SmoI	CTYRAG	3 cut(s)	328, 581, 629
Sse9I	AATT	7 cut(s)	35, 375, 426, 467, 526, 650, 719
SsiI	CCGC	2 cut(s)	194, 743
SspMI	CTAG	2 cut(s)	567, 731
SstI	GAGCTC	1 cut(s)	648
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	2 cut(s)	119, 500
TaaI	ACNGT	4 cut(s)	97, 464, 483, 806
TaqI	TCGA	2 cut(s)	648, 816
TasI	AATT	7 cut(s)	35, 375, 426, 467, 526, 650, 719
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	3 cut(s)	100, 214, 356
Tru1I	TTAA	2 cut(s)	38, 81
Tru9I	TTAA	2 cut(s)	38, 81
TscAI	CASTG	2 cut(s)	102, 366
TseI	GCWGC	2 cut(s)	414, 636
TspDTI	ATGAA	5 cut(s)	48, 198, 286, 473, 539
TspRI	CASTG	2 cut(s)	102, 366
VspI	ATTAAT	1 cut(s)	38
XapI	RAATTY	2 cut(s)	526, 650
XceI	RCATGY	1 cut(s)	311
XmnI	GAANNNNTTC	1 cut(s)	385
XspI	CTAG	2 cut(s)	567, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.