Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000713

Physical Location & Seq

Genomic Coordinates Forward (+)

5139530 .. 5142220

Gene Structure 2691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00222140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGAAGTGGCAAGTGAGGCAAGTGATTTTCGGCAATGGGACGAATTAATACCCGATGCATTGGGTCTAATCTTCAAAAACCTGTCTCTTAAGGAGTTGCTGACAGTGATTCCAATGGTCTGCAAATCGTGGGGTAAGGCAGTAATGGGGCCTTACTGCTGGCAAGAGGTAGACATTGAGGAATGGAGTGATATATGCCCAGAACCTCGGCACCTTGATCGTATGATACAAATGCTGATTTCAAGAAGCTGTGGATCTCTCAGAAAGCTTTGTGTTTCAGGCCTTAAAAATGACATGATCTTCTCCTTCATTGCTGAACATTCTAATTCCCTTCAGACCTTGAGTCTGCCAAGAAGTGAAATAAGTGATTCGATAGTGGAACAAACAATTGGAAGGCTTTCTCACATCACTTTCTTGGATCTTAGCTGCTGTGGGAAGATTGGTTTTCGTGCTCTGGAAGTCATAGGAAAGAACTGTAAATTGCTTGTGAAGTTGTTCAGGAACATGCATCCATTAGATATAGTTGGCATGCCTATTGTGGATGATGAGGCTAATGCCATTGCTGCCACAATGCCTAGACTGAAGCACCTTGAGATGGCATACCATGTCATTAGCACGGAGAGTGCACTTCAGATACTCAAGAGCTGCACCGAGCTTGAGTTGTTGGATTTGAGAGGGTGTTGGGGTGTTAAGCTTGATGATGAAAAGTACTTGGAGAAGAAGTTTCCGAAAGTGAAGGTTTTAGGGCCTCTTGTTCAGGATCACTATGAGGAAAATGAGTGGGATGACAACTCGTTTTACTCAGATGCTTCTTCGGAGTATCTAGCCTGGGAATTTGTGGATGATGACGATGATTTTGATGATGATGGGAGTTATGATGACATGTGGGATGGTGATGGAAGACTTGAGCAGCTTGAGTTGAGGTTCTATCAAGGAAATGAACATGAGACTGAAGGAGGGTTTGGTTGGCCTCCATCTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

F-box F-box-like LRR_6 Laminin_G_3

Protein Analysis

327

Amino Acids

37.33

Weight (kDa)

4.52

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08980 AT4G08980 AT4G08980 AT4G08980 AT4G08980
fragaria_vesca	FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36840 FvH4_5g36840 FvH4_5g36840
malus_domestica	MD01G1033400.v1.1 MD08G1186500.v1.1 MD15G1372500.v1.1
prunus_persica	Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1
pyrus_communis	pycom01g06090 pycom08g16030 pycom15g33350
rosa_chinensis	RchiOBHm_Chr2g0112771 RchiOBHm_Chr7g0243381 RchiOBHm_Chr7g0243391
rosa_laevigata	RLG00000000850 RLG00000000851 RLG00000018008
rosa_multiflora	Rmu_co8087500.1_g000001 Rmu_sc0001036.1_g000019 Rmu_sc0001036.1_g000027 Rmu_sc0001708.1_g000033 Rmu_sc0004612.1_g000003 Rmu_sc0024527.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131160 Rroxscaffold_3G00222130 Rroxscaffold_3G00222140
rosa_rugosa	Rorug02G0182300 Rorug02G0182400 Rorug02G0182500 Rorug02G0182600 Rorug07G0318700 Rorug07G0318800 Rorug07G0318900 Rorug07G0319000 Rorug07G0319000
rosa_samantha	Rh2AG237000 Rh2BG249900 Rh2CG241000 Rh2DG244500 Rh7AG475000 Rh7AG475100 Rh7BG444900 Rh7BG445000 Rh7CG491200 Rh7CG491300 Rh7DG459500 Rh7DG459600
rosa_wichuraiana	Rw2G018330 Rw7G039500 Rw7G039520 Rw7G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	210
AccI	GTMKAC	1 cut(s)	171
AclWI	GGATC	3 cut(s)	262, 426, 768
AcsI	RAATTY	1 cut(s)	833
AcuI	CTGAAG	4 cut(s)	317, 602, 614, 972
AfaI	GTAC	1 cut(s)	710
AfiI	CCNNNNNNNGG	1 cut(s)	595
AflII	CTTAAG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	882
AgsI	TTSAA	2 cut(s)	76, 243
AhdI	GACNNNNNGTC	1 cut(s)	342
AjnI	CCWGG	1 cut(s)	827
AjuI	GAANNNNNNNTTGG	4 cut(s)	372, 404, 945, 977
AluBI	AGCT	7 cut(s)	249, 268, 426, 645, 655, 694, 913
AluI	AGCT	7 cut(s)	249, 268, 426, 645, 655, 694, 913
Alw21I	GWGCWC	2 cut(s)	454, 628
Alw26I	GTCTC	2 cut(s)	90, 941
Alw44I	GTGCAC	1 cut(s)	624
AlwI	GGATC	3 cut(s)	262, 426, 768
AoxI	GGCC	4 cut(s)	149, 280, 746, 968
ApaLI	GTGCAC	1 cut(s)	624
ApeKI	GCWGC	4 cut(s)	426, 563, 645, 910
ApoI	RAATTY	1 cut(s)	833
ArsI	GACNNNNNNTTYG	2 cut(s)	839, 871
AseI	ATTAAT	1 cut(s)	47
Asp700I	GAANNNNTTC	2 cut(s)	397, 494
AspS9I	GGNCC	2 cut(s)	149, 746
AsuHPI	GGTGA	1 cut(s)	905
BaeGI	GKGCMC	1 cut(s)	628
BanI	GGYRCC	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	907
Bbv12I	GWGCWC	2 cut(s)	454, 628
BbvI	GCAGC	4 cut(s)	413, 550, 632, 922
BccI	CCATC	5 cut(s)	589, 860, 884, 890, 982
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BciT130I	CCWGG	1 cut(s)	829
BcoDI	GTCTC	2 cut(s)	90, 941
BfaI	CTAG	2 cut(s)	576, 824
BfrI	CTTAAG	1 cut(s)	89
BisI	GCNGC	4 cut(s)	427, 564, 646, 911
BlsI	GCNGC	4 cut(s)	428, 565, 647, 912
BmcAI	AGTACT	1 cut(s)	710
Bme1390I	CCNGG	1 cut(s)	829
BmeRI	GACNNNNNGTC	1 cut(s)	342
BmgT120I	GGNCC	2 cut(s)	149, 746
BmiI	GGNNCC	2 cut(s)	150, 212
BmrFI	CCNGG	1 cut(s)	829
BmsI	GCATC	3 cut(s)	46, 517, 796
BpiI	GAAGAC	1 cut(s)	907
BpuEI	CTTGAG	6 cut(s)	361, 611, 623, 677, 926, 935
BsaJI	CCNNGG	2 cut(s)	206, 828
BsaXI	ACNNNNNCTCC	2 cut(s)	707, 737
Bsc4I	CCNNNNNNNGG	1 cut(s)	595
Bse3DI	GCAATG	3 cut(s)	41, 309, 558
BseBI	CCWGG	1 cut(s)	829
BseDI	CCNNGG	2 cut(s)	206, 828
BseGI	GGATG	5 cut(s)	508, 547, 790, 847, 895
BseLI	CCNNNNNNNGG	1 cut(s)	595
BseMI	GCAATG	3 cut(s)	41, 309, 558
BseMII	CTCAG	2 cut(s)	274, 816
BseSI	GKGCMC	1 cut(s)	628
BseXI	GCAGC	4 cut(s)	413, 550, 632, 922
BsgI	GTGCAG	1 cut(s)	631
BshFI	GGCC	4 cut(s)	151, 282, 748, 970
BshNI	GGYRCC	1 cut(s)	210
BsiHKAI	GWGCWC	2 cut(s)	454, 628
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	595
BsmAI	GTCTC	2 cut(s)	90, 941
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	4 cut(s)	151, 282, 748, 970
Bsp1286I	GDGCHC	2 cut(s)	454, 628
Bsp143I	GATC	5 cut(s)	217, 254, 297, 418, 760
BspANI	GGCC	4 cut(s)	151, 282, 748, 970
BspCNI	CTCAG	2 cut(s)	273, 815
BspLI	GGNNCC	2 cut(s)	150, 212
BspPI	GGATC	3 cut(s)	262, 426, 768
BspT107I	GGYRCC	1 cut(s)	210
BspTI	CTTAAG	1 cut(s)	89
BsrDI	GCAATG	3 cut(s)	41, 309, 558
BssECI	CCNNGG	2 cut(s)	206, 828
BssMI	GATC	5 cut(s)	217, 254, 297, 418, 760
Bst2UI	CCWGG	1 cut(s)	829
Bst4CI	ACNGT	2 cut(s)	106, 476
BstAFI	CTTAAG	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	161, 530
BstDEI	CTNAG	3 cut(s)	260, 422, 802
BstF5I	GGATG	5 cut(s)	508, 547, 790, 847, 895
BstKTI	GATC	5 cut(s)	220, 257, 300, 421, 763
BstMAI	GTCTC	2 cut(s)	90, 941
BstMBI	GATC	5 cut(s)	217, 254, 297, 418, 760
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 563
BstNI	CCWGG	1 cut(s)	829
BstNSI	RCATGY	3 cut(s)	508, 532, 886
BstSCI	CCNGG	1 cut(s)	827
BstSLI	GKGCMC	1 cut(s)	628
BstV1I	GCAGC	4 cut(s)	413, 550, 632, 922
BstV2I	GAAGAC	1 cut(s)	907
BstX2I	RGATCY	2 cut(s)	254, 418
BstYI	RGATCY	2 cut(s)	254, 418
BsuRI	GGCC	4 cut(s)	151, 282, 748, 970
BtsCI	GGATG	5 cut(s)	508, 547, 790, 847, 895
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	2 cut(s)	161, 530
Cfr13I	GGNCC	2 cut(s)	149, 746
Csp6I	GTAC	1 cut(s)	709
CviAII	CATG	6 cut(s)	295, 505, 529, 605, 883, 944
CviQI	GTAC	1 cut(s)	709
DdeI	CTNAG	3 cut(s)	260, 422, 802
DpnI	GATC	5 cut(s)	219, 256, 299, 420, 762
DpnII	GATC	5 cut(s)	217, 254, 297, 418, 760
DriI	GACNNNNNGTC	1 cut(s)	342
Eam1105I	GACNNNNNGTC	1 cut(s)	342
Eco147I	AGGCCT	1 cut(s)	282
Eco57I	CTGAAG	4 cut(s)	317, 602, 614, 972
EcoO109I	RGGNCCY	2 cut(s)	149, 746
EcoRII	CCWGG	1 cut(s)	827
EcoT22I	ATGCAT	2 cut(s)	61, 510
FaeI	CATG	6 cut(s)	298, 508, 532, 608, 886, 947
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	6 cut(s)	294, 504, 528, 604, 882, 943
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	4 cut(s)	427, 564, 646, 911
FokI	GGATG	5 cut(s)	495, 554, 797, 854, 902
Fsp4HI	GCNGC	4 cut(s)	427, 564, 646, 911
FspBI	CTAG	2 cut(s)	576, 824
GluI	GCNGC	4 cut(s)	427, 564, 646, 911
HaeIII	GGCC	4 cut(s)	151, 282, 748, 970
Hin1II	CATG	6 cut(s)	298, 508, 532, 608, 886, 947
HindIII	AAGCTT	2 cut(s)	266, 692
HinfI	GANTC	3 cut(s)	109, 343, 368
HphI	GGTGA	1 cut(s)	905
Hpy166II	GTNNAC	2 cut(s)	172, 626
Hpy188I	TCNGA	6 cut(s)	263, 336, 633, 729, 805, 817
Hpy188III	TCNNGA	5 cut(s)	243, 455, 499, 640, 758
Hpy8I	GTNNAC	2 cut(s)	172, 626
HpyAV	CCTTC	5 cut(s)	316, 341, 387, 730, 947
HpyCH4III	ACNGT	2 cut(s)	106, 476
HpyCH4V	TGCA	5 cut(s)	59, 123, 508, 626, 648
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 563
HpyF3I	CTNAG	3 cut(s)	260, 422, 802
Hsp92II	CATG	6 cut(s)	298, 508, 532, 608, 886, 947
Kzo9I	GATC	5 cut(s)	217, 254, 297, 418, 760
LpnPI	CCDG	9 cut(s)	95, 145, 213, 264, 440, 484, 743, 814, 841
Lsp1109I	GCAGC	4 cut(s)	413, 550, 632, 922
LweI	GCATC	3 cut(s)	46, 517, 796
MaeI	CTAG	2 cut(s)	576, 824
MalI	GATC	5 cut(s)	219, 256, 299, 420, 762
MboI	GATC	5 cut(s)	217, 254, 297, 418, 760
MboII	GAAGA	6 cut(s)	64, 292, 448, 730, 804, 912
MfeI	CAATTG	1 cut(s)	387
MflI	RGATCY	2 cut(s)	254, 418
MhlI	GDGCHC	2 cut(s)	454, 628
MluCI	AATT	5 cut(s)	44, 325, 387, 479, 833
MlyI	GAGTC	1 cut(s)	352
MmeI	TCCRAC	1 cut(s)	645
Mph1103I	ATGCAT	2 cut(s)	61, 510
MroXI	GAANNNNTTC	2 cut(s)	397, 494
MseI	TTAA	4 cut(s)	47, 90, 285, 690
MspCI	CTTAAG	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	829
MunI	CAATTG	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	829
MwoI	GCNNNNNNNGC	2 cut(s)	17, 563
NdeII	GATC	5 cut(s)	217, 254, 297, 418, 760
NlaIII	CATG	6 cut(s)	298, 508, 532, 608, 886, 947
NlaIV	GGNNCC	2 cut(s)	150, 212
NmeAIII	GCCGAG	1 cut(s)	187
NsiI	ATGCAT	2 cut(s)	61, 510
NspI	RCATGY	3 cut(s)	508, 532, 886
PaeI	GCATGC	1 cut(s)	532
PceI	AGGCCT	1 cut(s)	282
PciI	ACATGT	1 cut(s)	882
PdmI	GAANNNNTTC	2 cut(s)	397, 494
PfeI	GAWTC	2 cut(s)	109, 368
PkrI	GCNGC	4 cut(s)	428, 565, 647, 912
PleI	GAGTC	1 cut(s)	351
PpsI	GAGTC	1 cut(s)	351
PscI	ACATGT	1 cut(s)	882
PshBI	ATTAAT	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	827
PspGI	CCWGG	1 cut(s)	827
PspN4I	GGNNCC	2 cut(s)	150, 212
PspPI	GGNCC	2 cut(s)	149, 746
PsuI	RGATCY	2 cut(s)	254, 418
RsaI	GTAC	1 cut(s)	710
RsaNI	GTAC	1 cut(s)	709
SaqAI	TTAA	4 cut(s)	47, 90, 285, 690
SatI	GCNGC	4 cut(s)	427, 564, 646, 911
Sau3AI	GATC	5 cut(s)	217, 254, 297, 418, 760
Sau96I	GGNCC	2 cut(s)	149, 746
ScaI	AGTACT	1 cut(s)	710
SchI	GAGTC	1 cut(s)	352
ScrFI	CCNGG	1 cut(s)	829
SduI	GDGCHC	2 cut(s)	454, 628
SfaNI	GCATC	3 cut(s)	46, 517, 796
SmlI	CTYRAG	7 cut(s)	89, 340, 590, 638, 656, 905, 914
SmoI	CTYRAG	7 cut(s)	89, 340, 590, 638, 656, 905, 914
SphI	GCATGC	1 cut(s)	532
Sse9I	AATT	5 cut(s)	44, 325, 387, 479, 833
SseBI	AGGCCT	1 cut(s)	282
SspMI	CTAG	2 cut(s)	576, 824
StuI	AGGCCT	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	827
TaaI	ACNGT	2 cut(s)	106, 476
TaqI	TCGA	1 cut(s)	371
TasI	AATT	5 cut(s)	44, 325, 387, 479, 833
TatI	WGTACW	1 cut(s)	708
TfiI	GAWTC	2 cut(s)	109, 368
Tru1I	TTAA	4 cut(s)	47, 90, 285, 690
Tru9I	TTAA	4 cut(s)	47, 90, 285, 690
TscAI	CASTG	1 cut(s)	111
TseI	GCWGC	4 cut(s)	426, 563, 645, 910
TspDTI	ATGAA	3 cut(s)	298, 717, 954
TspGWI	ACGGA	1 cut(s)	632
TspRI	CASTG	1 cut(s)	111
Vha464I	CTTAAG	1 cut(s)	89
VneI	GTGCAC	1 cut(s)	624
VspI	ATTAAT	1 cut(s)	47
XapI	RAATTY	1 cut(s)	833
XceI	RCATGY	3 cut(s)	508, 532, 886
XmiI	GTMKAC	1 cut(s)	171
XmnI	GAANNNNTTC	2 cut(s)	397, 494
XspI	CTAG	2 cut(s)	576, 824
ZrmI	AGTACT	1 cut(s)	710
Zsp2I	ATGCAT	2 cut(s)	61, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.