Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000713

Physical Location & Seq

Genomic Coordinates Forward (+)

19802824 .. 19806093

Gene Structure 3270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G190900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAGGAGGAGAATGAGTTCCGGAGTTGGGACGAGCTTATACCCGATGCCCTTGGGCTCATATTTAGGAAACTACCACTCCAAGAGACGCTTACTGTAATCCCAAGGGTCTGCAAGTCATGGGGAAGAGCAGTGGCCGGGCCTTACTGCTGGCAGGAGGTAGACATTATGGAATGGAGTAAATTTCGGACGCCAGAGACCATTACACGAATGCTTCAAATGCTGGTTTTAAGAAGCTCGGGTTCACTCCGCAAACTCTGCGTTGCTGGCCTTCCCAATGACCAGAGTTTTTCCTTTATTGCTGACCATGCCAATTCTCTTCGGACATTGCGGCTGCCAAGAAGTGAAATAAGTGATTTGATAGTGGAACAGGTTGCTGCAAGGCTCTCTACCCTAACTTACTTGGATGTAAGCTACTGCAAAACTATTGGAGGTCCTGCACTTGAGGCAATTGGAAAGCACTGCAAACATCTCAGAAAGTTGCAGAGATGTATGTACGGATGGGAGGTACTTGACAAGGTCTCTCAAGATGACGAGGCCCTTGCAATAGCAGCCACAATGCCAAAACTCAATCACCTTGAGATACTCTACCTCCGTATTAGTACAGAAGCTGTGTGCCAGATACTCTTGAAGTGCCCTGAGCTCCAGTTATTAGATGTGCGAGGGTGCTATAGTGTAAAGCTTGATGAAAGGTTTGTCAAGAAATTCTCAGGACTGAAGGTGATTGGACCAGGTTCAGACAATGAGGGCTGGGATGAATGTTCAAACTACTCAGTTTCTTCTGGCTACTTAGCTTGGGACTTCGTCGCCAGTGTAATGGATGACGATTTTGACGAAGAGATGTTAGATGAAGCTTGGGAAGACGACCAAAGTATGGAGGATGTAGAAATGAGGTTCTATGATGGTTTTTATCTTGACAATGGTGGGTTCGACTGGCCCCTATCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

317

Amino Acids

36.1

Weight (kDa)

4.66

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08980 AT4G08980 AT4G08980 AT4G08980 AT4G08980
fragaria_vesca	FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36840 FvH4_5g36840 FvH4_5g36840
malus_domestica	MD01G1033400.v1.1 MD08G1186500.v1.1 MD15G1372500.v1.1
prunus_persica	Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1
pyrus_communis	pycom01g06090 pycom08g16030 pycom15g33350
rosa_chinensis	RchiOBHm_Chr2g0112771 RchiOBHm_Chr7g0243381 RchiOBHm_Chr7g0243391
rosa_laevigata	RLG00000000850 RLG00000000851 RLG00000018008
rosa_multiflora	Rmu_co8087500.1_g000001 Rmu_sc0001036.1_g000019 Rmu_sc0001036.1_g000027 Rmu_sc0001708.1_g000033 Rmu_sc0004612.1_g000003 Rmu_sc0024527.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131160 Rroxscaffold_3G00222130 Rroxscaffold_3G00222140
rosa_rugosa	Rorug02G0182300 Rorug02G0182400 Rorug02G0182500 Rorug02G0182600 Rorug07G0318700 Rorug07G0318800 Rorug07G0318900 Rorug07G0319000 Rorug07G0319000
rosa_samantha	Rh2AG237000 Rh2BG249900 Rh2CG241000 Rh2DG244500 Rh7AG475000 Rh7AG475100 Rh7BG444900 Rh7BG445000 Rh7CG491200 Rh7CG491300 Rh7DG459500 Rh7DG459600
rosa_wichuraiana	Rw2G018330 Rw7G039500 Rw7G039520 Rw7G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	874
AccI	GTMKAC	1 cut(s)	162
AccIII	TCCGGA	1 cut(s)	21
AciI	CCGC	2 cut(s)	250, 331
AcoI	YGGCCR	1 cut(s)	135
AcsI	RAATTY	2 cut(s)	182, 704
AcuI	CTGAAG	1 cut(s)	737
AcyI	GRCGYC	1 cut(s)	191
AfaI	GTAC	3 cut(s)	497, 510, 604
AfiI	CCNNNNNNNGG	2 cut(s)	28, 874
AgsI	TTSAA	3 cut(s)	218, 631, 765
AjnI	CCWGG	1 cut(s)	730
AloI	GAACNNNNNNTCC	1 cut(s)	34
AluBI	AGCT	8 cut(s)	37, 237, 414, 611, 643, 682, 794, 854
AluI	AGCT	8 cut(s)	37, 237, 414, 611, 643, 682, 794, 854
Alw21I	GWGCWC	1 cut(s)	645
Alw26I	GTCTC	3 cut(s)	80, 191, 526
AlwNI	CAGNNNCTG	1 cut(s)	611
Ama87I	CYCGRG	1 cut(s)	238
Aor13HI	TCCGGA	1 cut(s)	21
AoxI	GGCC	5 cut(s)	135, 140, 268, 537, 935
ApeKI	GCWGC	3 cut(s)	334, 377, 551
ApoI	RAATTY	2 cut(s)	182, 704
Asp700I	GAANNNNTTC	1 cut(s)	17
AspS9I	GGNCC	5 cut(s)	140, 434, 538, 728, 936
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	2 cut(s)	566, 733
AvaI	CYCGRG	1 cut(s)	238
AvaII	GGWCC	2 cut(s)	434, 728
BaeGI	GKGCMC	1 cut(s)	638
BanII	GRGCYC	2 cut(s)	60, 645
BbsI	GAAGAC	1 cut(s)	867
Bbv12I	GWGCWC	1 cut(s)	645
BbvI	GCAGC	3 cut(s)	321, 364, 563
BccI	CCATC	2 cut(s)	495, 896
BcgI	CGANNNNNNTGC	2 cut(s)	524, 558
BciT130I	CCWGG	1 cut(s)	732
BcnI	CCSGG	1 cut(s)	139
BcoDI	GTCTC	3 cut(s)	80, 191, 526
BfmI	CTRYAG	1 cut(s)	670
BisI	GCNGC	4 cut(s)	332, 335, 378, 552
BlsI	GCNGC	4 cut(s)	333, 336, 379, 553
Bme1390I	CCNGG	2 cut(s)	139, 732
Bme18I	GGWCC	2 cut(s)	434, 728
BmeT110I	CYCGRG	1 cut(s)	238
BmgT120I	GGNCC	5 cut(s)	140, 434, 538, 728, 936
BmiI	GGNNCC	1 cut(s)	938
BmrFI	CCNGG	2 cut(s)	139, 732
BmsI	GCATC	1 cut(s)	37
BpiI	GAAGAC	1 cut(s)	867
BpmI	CTGGAG	1 cut(s)	629
Bpu10I	CCTNAGC	1 cut(s)	639
BpuEI	CTTGAG	3 cut(s)	464, 510, 599
BpuMI	CCSGG	1 cut(s)	139
BsaHI	GRCGYC	1 cut(s)	191
BsaI	GGTCTC	2 cut(s)	191, 526
BsaJI	CCNNGG	2 cut(s)	52, 104
BsaWI	WCCGGW	1 cut(s)	21
BsaXI	ACNNNNNCTCC	5 cut(s)	32, 63, 93, 576, 606
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 874
Bse1I	ACTGG	3 cut(s)	646, 810, 938
Bse3DI	GCAATG	1 cut(s)	326
BseAI	TCCGGA	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	732
BseDI	CCNNGG	2 cut(s)	52, 104
BseGI	GGATG	5 cut(s)	412, 506, 760, 826, 886
BseLI	CCNNNNNNNGG	2 cut(s)	28, 874
BseMI	GCAATG	1 cut(s)	326
BseMII	CTCAG	4 cut(s)	487, 630, 723, 786
BseNI	ACTGG	3 cut(s)	646, 810, 938
BseRI	GAGGAG	2 cut(s)	20, 23
BseSI	GKGCMC	1 cut(s)	638
BseXI	GCAGC	3 cut(s)	321, 364, 563
BseYI	CCCAGC	1 cut(s)	750
BsgI	GTGCAG	1 cut(s)	423
BshFI	GGCC	5 cut(s)	137, 142, 270, 539, 937
BsiHKAI	GWGCWC	1 cut(s)	645
BsiHKCI	CYCGRG	1 cut(s)	238
BsiSI	CCGG	2 cut(s)	22, 138
BslFI	GGGAC	2 cut(s)	44, 812
BslI	CCNNNNNNNGG	2 cut(s)	28, 874
BsmAI	GTCTC	3 cut(s)	80, 191, 526
BsmBI	CGTCTC	1 cut(s)	80
BsmFI	GGGAC	2 cut(s)	44, 812
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	5 cut(s)	137, 142, 270, 539, 937
Bso31I	GGTCTC	2 cut(s)	191, 526
BsoBI	CYCGRG	1 cut(s)	238
Bsp1286I	GDGCHC	3 cut(s)	60, 638, 645
Bsp13I	TCCGGA	1 cut(s)	21
BspACI	CCGC	2 cut(s)	250, 331
BspANI	GGCC	5 cut(s)	137, 142, 270, 539, 937
BspCNI	CTCAG	4 cut(s)	486, 631, 722, 785
BspEI	TCCGGA	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	938
BspQI	GCTCTTC	1 cut(s)	121
BspTNI	GGTCTC	2 cut(s)	191, 526
BsrDI	GCAATG	1 cut(s)	326
BsrI	ACTGG	3 cut(s)	646, 810, 938
BssECI	CCNNGG	2 cut(s)	52, 104
BssNI	GRCGYC	1 cut(s)	191
BssT1I	CCWWGG	2 cut(s)	52, 104
Bst2UI	CCWGG	1 cut(s)	732
Bst4CI	ACNGT	1 cut(s)	97
Bst6I	CTCTTC	3 cut(s)	121, 324, 831
BstACI	GRCGYC	1 cut(s)	191
BstAPI	GCANNNNNTGC	1 cut(s)	258
BstC8I	GCNNGC	2 cut(s)	152, 268
BstDEI	CTNAG	5 cut(s)	473, 639, 709, 772, 790
BstF5I	GGATG	5 cut(s)	412, 506, 760, 826, 886
BstMAI	GTCTC	3 cut(s)	80, 191, 526
BstMWI	GCNNNNNNNGC	6 cut(s)	220, 258, 267, 308, 446, 551
BstNI	CCWGG	1 cut(s)	732
BstSCI	CCNGG	2 cut(s)	137, 730
BstSFI	CTRYAG	1 cut(s)	670
BstSLI	GKGCMC	1 cut(s)	638
BstV1I	GCAGC	3 cut(s)	321, 364, 563
BstV2I	GAAGAC	1 cut(s)	867
BstXI	CCANNNNNNTGG	1 cut(s)	817
BsuRI	GGCC	5 cut(s)	137, 142, 270, 539, 937
BtsCI	GGATG	5 cut(s)	412, 506, 760, 826, 886
BtsI	GCAGTG	2 cut(s)	138, 460
BtsIMutI	CAGTG	3 cut(s)	138, 460, 817
Cac8I	GCNNGC	2 cut(s)	152, 268
CaiI	CAGNNNCTG	1 cut(s)	611
Cfr13I	GGNCC	5 cut(s)	140, 434, 538, 728, 936
CseI	GACGC	2 cut(s)	97, 199
CsiI	ACCWGGT	1 cut(s)	730
Csp6I	GTAC	3 cut(s)	496, 509, 603
CviAII	CATG	2 cut(s)	120, 308
CviQI	GTAC	3 cut(s)	496, 509, 603
DdeI	CTNAG	5 cut(s)	473, 639, 709, 772, 790
EaeI	YGGCCR	1 cut(s)	135
Eam1104I	CTCTTC	3 cut(s)	121, 324, 831
EarI	CTCTTC	3 cut(s)	121, 324, 831
Ecl136II	GAGCTC	1 cut(s)	643
Eco130I	CCWWGG	2 cut(s)	52, 104
Eco24I	GRGCYC	2 cut(s)	60, 645
Eco31I	GGTCTC	2 cut(s)	191, 526
Eco47I	GGWCC	2 cut(s)	434, 728
Eco53kI	GAGCTC	1 cut(s)	643
Eco57I	CTGAAG	1 cut(s)	737
Eco88I	CYCGRG	1 cut(s)	238
EcoICRI	GAGCTC	1 cut(s)	643
EcoO109I	RGGNCCY	2 cut(s)	434, 538
EcoRII	CCWGG	1 cut(s)	730
EcoT14I	CCWWGG	2 cut(s)	52, 104
EcoT38I	GRGCYC	2 cut(s)	60, 645
ErhI	CCWWGG	2 cut(s)	52, 104
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	2 cut(s)	123, 311
FaiI	YATR	9 cut(s)	41, 62, 121, 170, 309, 494, 672, 875, 900
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	2 cut(s)	44, 812
FatI	CATG	2 cut(s)	119, 307
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	4 cut(s)	332, 335, 378, 552
FokI	GGATG	5 cut(s)	419, 513, 767, 833, 893
FriOI	GRGCYC	2 cut(s)	60, 645
Fsp4HI	GCNGC	4 cut(s)	332, 335, 378, 552
GluI	GCNGC	4 cut(s)	332, 335, 378, 552
GsaI	CCCAGC	1 cut(s)	754
GsuI	CTGGAG	1 cut(s)	629
HaeIII	GGCC	5 cut(s)	137, 142, 270, 539, 937
HapII	CCGG	2 cut(s)	22, 138
HgaI	GACGC	2 cut(s)	97, 199
Hin1I	GRCGYC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	123, 311
HindIII	AAGCTT	2 cut(s)	680, 852
HpaII	CCGG	2 cut(s)	22, 138
HphI	GGTGA	2 cut(s)	566, 733
Hpy166II	GTNNAC	2 cut(s)	163, 245
Hpy188I	TCNGA	4 cut(s)	189, 324, 476, 739
Hpy188III	TCNNGA	6 cut(s)	22, 527, 628, 700, 711, 914
Hpy8I	GTNNAC	2 cut(s)	163, 245
Hpy99I	CGWCG	1 cut(s)	809
HpyAV	CCTTC	2 cut(s)	281, 712
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4V	TGCA	7 cut(s)	114, 380, 420, 440, 465, 484, 545
HpyF10VI	GCNNNNNNNGC	6 cut(s)	220, 258, 267, 308, 446, 551
HpyF3I	CTNAG	5 cut(s)	473, 639, 709, 772, 790
Hsp92I	GRCGYC	1 cut(s)	191
Hsp92II	CATG	2 cut(s)	123, 311
Kpn2I	TCCGGA	1 cut(s)	21
LguI	GCTCTTC	1 cut(s)	121
LmnI	GCTCC	1 cut(s)	648
Lsp1109I	GCAGC	3 cut(s)	321, 364, 563
LweI	GCATC	1 cut(s)	37
MabI	ACCWGGT	1 cut(s)	730
MboII	GAAGA	5 cut(s)	138, 311, 771, 848, 872
MfeI	CAATTG	1 cut(s)	450
MhlI	GDGCHC	3 cut(s)	60, 638, 645
MluCI	AATT	4 cut(s)	182, 313, 450, 704
MroI	TCCGGA	1 cut(s)	21
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	1 cut(s)	230
MspI	CCGG	2 cut(s)	22, 138
MspR9I	CCNGG	2 cut(s)	139, 732
MunI	CAATTG	1 cut(s)	450
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	732
MwoI	GCNNNNNNNGC	6 cut(s)	220, 258, 267, 308, 446, 551
NciI	CCSGG	1 cut(s)	139
NlaIII	CATG	2 cut(s)	123, 311
NlaIV	GGNNCC	1 cut(s)	938
PciSI	GCTCTTC	1 cut(s)	121
PcsI	WCGNNNNNNNCGW	1 cut(s)	831
PctI	GAATGC	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	17
PflFI	GACNNNGTC	2 cut(s)	518, 803
PflMI	CCANNNNNTGG	1 cut(s)	874
PkrI	GCNGC	4 cut(s)	333, 336, 379, 553
PpuMI	RGGWCCY	1 cut(s)	434
Psp124BI	GAGCTC	1 cut(s)	645
Psp5II	RGGWCCY	1 cut(s)	434
Psp6I	CCWGG	1 cut(s)	730
PspFI	CCCAGC	1 cut(s)	750
PspGI	CCWGG	1 cut(s)	730
PspN4I	GGNNCC	1 cut(s)	938
PspPI	GGNCC	5 cut(s)	140, 434, 538, 728, 936
PspPPI	RGGWCCY	1 cut(s)	434
PstNI	CAGNNNCTG	1 cut(s)	611
PsyI	GACNNNGTC	2 cut(s)	518, 803
RsaI	GTAC	3 cut(s)	497, 510, 604
RsaNI	GTAC	3 cut(s)	496, 509, 603
SacI	GAGCTC	1 cut(s)	645
SapI	GCTCTTC	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	4 cut(s)	332, 335, 378, 552
Sau96I	GGNCC	5 cut(s)	140, 434, 538, 728, 936
ScrFI	CCNGG	2 cut(s)	139, 732
SduI	GDGCHC	3 cut(s)	60, 638, 645
SexAI	ACCWGGT	1 cut(s)	730
SfaNI	GCATC	1 cut(s)	37
SfcI	CTRYAG	1 cut(s)	670
SinI	GGWCC	2 cut(s)	434, 728
SmlI	CTYRAG	3 cut(s)	443, 525, 578
SmoI	CTYRAG	3 cut(s)	443, 525, 578
Sse9I	AATT	4 cut(s)	182, 313, 450, 704
SsiI	CCGC	2 cut(s)	250, 331
SstI	GAGCTC	1 cut(s)	645
StyD4I	CCNGG	2 cut(s)	137, 730
StyI	CCWWGG	2 cut(s)	52, 104
TaaI	ACNGT	1 cut(s)	97
TaqI	TCGA	1 cut(s)	930
TasI	AATT	4 cut(s)	182, 313, 450, 704
TatI	WGTACW	1 cut(s)	602
TauI	GCSGC	1 cut(s)	334
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	3 cut(s)	138, 467, 817
TseI	GCWGC	3 cut(s)	334, 377, 551
TspDTI	ATGAA	3 cut(s)	702, 771, 864
TspGWI	ACGGA	2 cut(s)	513, 584
TspRI	CASTG	3 cut(s)	138, 467, 817
Tth111I	GACNNNGTC	2 cut(s)	518, 803
Van91I	CCANNNNNTGG	1 cut(s)	874
VpaK11BI	GGWCC	2 cut(s)	434, 728
XapI	RAATTY	2 cut(s)	182, 704
XmiI	GTMKAC	1 cut(s)	162
XmnI	GAANNNNTTC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.