Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001036.1

Orthogroup ID

OG0000713

Physical Location & Seq

Genomic Coordinates Forward (+)

99726 .. 100866

Gene Structure 1141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001036.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atggcaagtgattttccgcattgggatgaattaatacctgaggcattgagtctgatattcaacagcctttcttttaagcagaagctaacagtgattccaatggtttgcaaaccatggagcaaggcagttatggggtctgactgctggcaagagatagacattgaggaatggagtgatatatgcccagaacctcagcaccttgatctcgtagaacagacaattggaagcttttctaatatcaccttcttggacgttagctgctgtgataatattggtcatcgtgctctagaggccatcggaatgaactgtaaattgctcatgggactgtgccggaacctacatccagtggactctccagacttccatatgaatgatgaggctcatgccattgccaccacaatgcctagactgaagcaccttgagatggcataccataaaatcaacacacaaggggctcttcaattactcgagagatgccctgagctcgaatttttggatttgagagggtggcctcttgatatggaggatcactatgagggaaatgagtgggatgacaactcggattactcggatggttcttccgagcatttaatctatgaatctgtggatgatgacgatgattttgatgatgatgggaattatgatgacatggtatgttggtggaagaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

F-box F-box-like LRR_6 Laminin_G_3

Protein Analysis

223

Amino Acids

25.71

Weight (kDa)

4.21

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08980 AT4G08980 AT4G08980 AT4G08980 AT4G08980
fragaria_vesca	FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36840 FvH4_5g36840 FvH4_5g36840
malus_domestica	MD01G1033400.v1.1 MD08G1186500.v1.1 MD15G1372500.v1.1
prunus_persica	Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1
pyrus_communis	pycom01g06090 pycom08g16030 pycom15g33350
rosa_chinensis	RchiOBHm_Chr2g0112771 RchiOBHm_Chr7g0243381 RchiOBHm_Chr7g0243391
rosa_laevigata	RLG00000000850 RLG00000000851 RLG00000018008
rosa_multiflora	Rmu_co8087500.1_g000001 Rmu_sc0001036.1_g000019 Rmu_sc0001036.1_g000027 Rmu_sc0001708.1_g000033 Rmu_sc0004612.1_g000003 Rmu_sc0024527.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131160 Rroxscaffold_3G00222130 Rroxscaffold_3G00222140
rosa_rugosa	Rorug02G0182300 Rorug02G0182400 Rorug02G0182500 Rorug02G0182600 Rorug07G0318700 Rorug07G0318800 Rorug07G0318900 Rorug07G0319000 Rorug07G0319000
rosa_samantha	Rh2AG237000 Rh2BG249900 Rh2CG241000 Rh2DG244500 Rh7AG475000 Rh7AG475100 Rh7BG444900 Rh7BG445000 Rh7CG491200 Rh7CG491300 Rh7DG459500 Rh7DG459600
rosa_wichuraiana	Rw2G018330 Rw7G039500 Rw7G039520 Rw7G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	17
AclWI	GGATC	1 cut(s)	534
AcsI	RAATTY	1 cut(s)	488
AcuI	CTGAAG	1 cut(s)	431
AfiI	CCNNNNNNNGG	1 cut(s)	424
AgsI	TTSAA	2 cut(s)	61, 461
AjuI	GAANNNNNNNTTGG	2 cut(s)	204, 236
AluBI	AGCT	4 cut(s)	85, 228, 258, 484
AluI	AGCT	4 cut(s)	85, 228, 258, 484
Alw21I	GWGCWC	2 cut(s)	286, 486
AlwI	GGATC	1 cut(s)	534
Ama87I	CYCGRG	1 cut(s)	467
AoxI	GGCC	2 cut(s)	291, 509
ApeKI	GCWGC	1 cut(s)	258
ApoI	RAATTY	1 cut(s)	488
ArsI	GACNNNNNNTTYG	2 cut(s)	605, 637
AseI	ATTAAT	1 cut(s)	32
Asp700I	GAANNNNTTC	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	467
AxyI	CCTNAGG	1 cut(s)	39
BanII	GRGCYC	2 cut(s)	457, 486
Bbv12I	GWGCWC	2 cut(s)	286, 486
BbvCI	CCTCAGC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	245
BccI	CCATC	4 cut(s)	302, 418, 566, 626
BfaI	CTAG	2 cut(s)	287, 405
BisI	GCNGC	1 cut(s)	259
BlsI	GCNGC	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	467
BmiI	GGNNCC	1 cut(s)	335
BmsI	GCATC	1 cut(s)	464
BpmI	CTGGAG	1 cut(s)	339
Bpu10I	CCTNAGC	2 cut(s)	192, 480
BpuEI	CTTGAG	1 cut(s)	440
BsaJI	CCNNGG	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
Bse1I	ACTGG	1 cut(s)	344
Bse21I	CCTNAGG	1 cut(s)	39
Bse3DI	GCAATG	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	5 cut(s)	31, 340, 556, 577, 613
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	3 cut(s)	30, 206, 471
BseNI	ACTGG	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	245
BshFI	GGCC	2 cut(s)	293, 511
BsiHKAI	GWGCWC	2 cut(s)	286, 486
BsiHKCI	CYCGRG	1 cut(s)	467
BsiSI	CCGG	1 cut(s)	331
BslFI	GGGAC	1 cut(s)	336
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmFI	GGGAC	1 cut(s)	336
BsnI	GGCC	2 cut(s)	293, 511
BsoBI	CYCGRG	1 cut(s)	467
Bsp1286I	GDGCHC	3 cut(s)	286, 457, 486
Bsp143I	GATC	2 cut(s)	202, 526
Bsp19I	CCATGG	1 cut(s)	113
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	2 cut(s)	293, 511
BspCNI	CTCAG	3 cut(s)	31, 205, 472
BspLI	GGNNCC	1 cut(s)	335
BspPI	GGATC	1 cut(s)	534
BspQI	GCTCTTC	1 cut(s)	462
BsrDI	GCAATG	1 cut(s)	387
BsrI	ACTGG	1 cut(s)	344
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	2 cut(s)	202, 526
BssT1I	CCWWGG	1 cut(s)	113
Bst4CI	ACNGT	3 cut(s)	91, 308, 327
Bst6I	CTCTTC	1 cut(s)	462
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	3 cut(s)	39, 192, 480
BstDSI	CCRYGG	1 cut(s)	113
BstF5I	GGATG	5 cut(s)	31, 340, 556, 577, 613
BstKTI	GATC	2 cut(s)	205, 529
BstMBI	GATC	2 cut(s)	202, 526
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	245
Bsu36I	CCTNAGG	1 cut(s)	39
BsuRI	GGCC	2 cut(s)	293, 511
BtgI	CCRYGG	1 cut(s)	113
BtsCI	GGATG	5 cut(s)	31, 340, 556, 577, 613
BtsIMutI	CAGTG	2 cut(s)	96, 351
Cac8I	GCNNGC	1 cut(s)	146
CviAII	CATG	4 cut(s)	114, 319, 383, 649
CviJI	RGCY	9 cut(s)	66, 85, 228, 258, 293, 380, 455, 484, 511
CviKI_1	RGCY	9 cut(s)	66, 85, 228, 258, 293, 380, 455, 484, 511
DdeI	CTNAG	3 cut(s)	39, 192, 480
DpnI	GATC	2 cut(s)	204, 528
DpnII	GATC	2 cut(s)	202, 526
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Ecl136II	GAGCTC	1 cut(s)	484
Eco130I	CCWWGG	1 cut(s)	113
Eco24I	GRGCYC	2 cut(s)	457, 486
Eco53kI	GAGCTC	1 cut(s)	484
Eco57I	CTGAAG	1 cut(s)	431
Eco81I	CCTNAGG	1 cut(s)	39
Eco88I	CYCGRG	1 cut(s)	467
EcoICRI	GAGCTC	1 cut(s)	484
EcoT14I	CCWWGG	1 cut(s)	113
EcoT38I	GRGCYC	2 cut(s)	457, 486
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	4 cut(s)	117, 322, 386, 652
FalI	AAGNNNNNCTT	2 cut(s)	441, 473
FaqI	GGGAC	1 cut(s)	336
FatI	CATG	4 cut(s)	113, 318, 382, 648
FauNDI	CATATG	1 cut(s)	366
Fnu4HI	GCNGC	1 cut(s)	259
FokI	GGATG	5 cut(s)	38, 327, 563, 584, 620
FriOI	GRGCYC	2 cut(s)	457, 486
Fsp4HI	GCNGC	1 cut(s)	259
FspBI	CTAG	2 cut(s)	287, 405
GluI	GCNGC	1 cut(s)	259
GsuI	CTGGAG	1 cut(s)	339
HaeIII	GGCC	2 cut(s)	293, 511
HapII	CCGG	1 cut(s)	331
Hin1II	CATG	4 cut(s)	117, 322, 386, 652
HindIII	AAGCTT	1 cut(s)	226
HinfI	GANTC	4 cut(s)	49, 94, 350, 599
HpaII	CCGG	1 cut(s)	331
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	6 cut(s)	54, 139, 299, 562, 571, 583
Hpy188III	TCNNGA	4 cut(s)	287, 356, 469, 515
Hpy8I	GTNNAC	1 cut(s)	349
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	3 cut(s)	91, 308, 327
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	1 cut(s)	108
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	3 cut(s)	39, 192, 480
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	4 cut(s)	117, 322, 386, 652
Kzo9I	GATC	2 cut(s)	202, 526
LguI	GCTCTTC	1 cut(s)	462
LmnI	GCTCC	1 cut(s)	117
LpnPI	CCDG	7 cut(s)	51, 130, 198, 344, 357, 369, 492
Lsp1109I	GCAGC	1 cut(s)	245
LweI	GCATC	1 cut(s)	464
MaeI	CTAG	2 cut(s)	287, 405
MaeII	ACGT	1 cut(s)	252
MalI	GATC	2 cut(s)	204, 528
MboI	GATC	2 cut(s)	202, 526
MboII	GAAGA	2 cut(s)	449, 570
MfeI	CAATTG	1 cut(s)	219
MhlI	GDGCHC	3 cut(s)	286, 457, 486
MluCI	AATT	7 cut(s)	29, 219, 311, 461, 488, 637, 667
MlyI	GAGTC	2 cut(s)	58, 344
MnlI	CCTC	9 cut(s)	34, 157, 201, 283, 370, 497, 517, 522, 529
MroXI	GAANNNNTTC	1 cut(s)	229
MseI	TTAA	3 cut(s)	32, 75, 590
MslI	CAYNNNNRTG	4 cut(s)	24, 299, 369, 398
MspI	CCGG	1 cut(s)	331
MunI	CAATTG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	290
NcoI	CCATGG	1 cut(s)	113
NdeI	CATATG	1 cut(s)	366
NdeII	GATC	2 cut(s)	202, 526
NlaIII	CATG	4 cut(s)	117, 322, 386, 652
NlaIV	GGNNCC	1 cut(s)	335
PaeR7I	CTCGAG	1 cut(s)	467
PciSI	GCTCTTC	1 cut(s)	462
PdmI	GAANNNNTTC	1 cut(s)	229
PfeI	GAWTC	2 cut(s)	94, 599
PkrI	GCNGC	1 cut(s)	260
PleI	GAGTC	2 cut(s)	57, 344
PpsI	GAGTC	2 cut(s)	57, 344
PshBI	ATTAAT	1 cut(s)	32
Psp124BI	GAGCTC	1 cut(s)	486
PspN4I	GGNNCC	1 cut(s)	335
RseI	CAYNNNNRTG	4 cut(s)	24, 299, 369, 398
SacI	GAGCTC	1 cut(s)	486
SapI	GCTCTTC	1 cut(s)	462
SaqAI	TTAA	3 cut(s)	32, 75, 590
SatI	GCNGC	1 cut(s)	259
Sau3AI	GATC	2 cut(s)	202, 526
SchI	GAGTC	2 cut(s)	58, 344
SduI	GDGCHC	3 cut(s)	286, 457, 486
SfaNI	GCATC	1 cut(s)	464
Sfr274I	CTCGAG	1 cut(s)	467
SlaI	CTCGAG	1 cut(s)	467
SmiMI	CAYNNNNRTG	4 cut(s)	24, 299, 369, 398
SmlI	CTYRAG	2 cut(s)	419, 467
SmoI	CTYRAG	2 cut(s)	419, 467
Sse9I	AATT	7 cut(s)	29, 219, 311, 461, 488, 637, 667
SsiI	CCGC	1 cut(s)	17
SspI	AATATT	1 cut(s)	271
SspMI	CTAG	2 cut(s)	287, 405
SstI	GAGCTC	1 cut(s)	486
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	3 cut(s)	91, 308, 327
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	2 cut(s)	468, 486
TasI	AATT	7 cut(s)	29, 219, 311, 461, 488, 637, 667
TfiI	GAWTC	2 cut(s)	94, 599
Tru1I	TTAA	3 cut(s)	32, 75, 590
Tru9I	TTAA	3 cut(s)	32, 75, 590
TscAI	CASTG	2 cut(s)	96, 351
TseI	GCWGC	1 cut(s)	258
TspDTI	ATGAA	4 cut(s)	42, 317, 383, 612
TspRI	CASTG	2 cut(s)	96, 351
VspI	ATTAAT	1 cut(s)	32
XapI	RAATTY	1 cut(s)	488
XbaI	TCTAGA	1 cut(s)	286
XhoI	CTCGAG	1 cut(s)	467
XmnI	GAANNNNTTC	1 cut(s)	229
XspI	CTAG	2 cut(s)	287, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.