Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024527.1

Orthogroup ID

OG0000713

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 724

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024527.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 436 bp

atggtttgcaaaccatggagcaaggcagttatggggtctgactgctggcaagagatagacattgaggaatggagtgataaacaccagccgcaacaccttgatcgcatgattcaaatgctggttgcaagaagttgtggatcaatgagaaagctgtgtgtttccgaactccaaaacgacatgattttctccttcattgctgaacaaagtgaaatgagtgattcagtcgtagaacagacaattggaaggttttctaacatcaccttcttggatcttagctattgtggtaaaattggtagttgtgctctaaaggccgttggaatgaactgtaaattgctcacgggactgtgccgggacatatatctatcgtactctgcaggcatccatatgaatgatgaggcttatgccattgccaccacaatgcctagacttaagcacc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

F-box F-box-like LRR_6 Laminin_G_3

Protein Analysis

145

Amino Acids

16.38

Weight (kDa)

5.76

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08980 AT4G08980 AT4G08980 AT4G08980 AT4G08980
fragaria_vesca	FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36840 FvH4_5g36840 FvH4_5g36840
malus_domestica	MD01G1033400.v1.1 MD08G1186500.v1.1 MD15G1372500.v1.1
prunus_persica	Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1
pyrus_communis	pycom01g06090 pycom08g16030 pycom15g33350
rosa_chinensis	RchiOBHm_Chr2g0112771 RchiOBHm_Chr7g0243381 RchiOBHm_Chr7g0243391
rosa_laevigata	RLG00000000850 RLG00000000851 RLG00000018008
rosa_multiflora	Rmu_co8087500.1_g000001 Rmu_sc0001036.1_g000019 Rmu_sc0001036.1_g000027 Rmu_sc0001708.1_g000033 Rmu_sc0004612.1_g000003 Rmu_sc0024527.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131160 Rroxscaffold_3G00222130 Rroxscaffold_3G00222140
rosa_rugosa	Rorug02G0182300 Rorug02G0182400 Rorug02G0182500 Rorug02G0182600 Rorug07G0318700 Rorug07G0318800 Rorug07G0318900 Rorug07G0319000 Rorug07G0319000
rosa_samantha	Rh2AG237000 Rh2BG249900 Rh2CG241000 Rh2DG244500 Rh7AG475000 Rh7AG475100 Rh7BG444900 Rh7BG445000 Rh7CG491200 Rh7CG491300 Rh7DG459500 Rh7DG459600
rosa_wichuraiana	Rw2G018330 Rw7G039500 Rw7G039520 Rw7G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	89
AclWI	GGATC	2 cut(s)	145, 276
AfaI	GTAC	1 cut(s)	368
AflII	CTTAAG	1 cut(s)	428
AgsI	TTSAA	1 cut(s)	113
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
AluBI	AGCT	2 cut(s)	151, 276
AluI	AGCT	2 cut(s)	151, 276
Alw21I	GWGCWC	1 cut(s)	304
AlwI	GGATC	2 cut(s)	145, 276
AoxI	GGCC	1 cut(s)	309
Asp700I	GAANNNNTTC	1 cut(s)	247
AsuC2I	CCSGG	1 cut(s)	350
AsuHPI	GGTGA	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	304
BceAI	ACGGC	1 cut(s)	296
BcnI	CCSGG	1 cut(s)	350
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	372
BfrI	CTTAAG	1 cut(s)	428
BisI	GCNGC	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	90
Bme1390I	CCNGG	1 cut(s)	350
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	1 cut(s)	387
BpuMI	CCSGG	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	14
Bse3DI	GCAATG	2 cut(s)	192, 405
BseDI	CCNNGG	1 cut(s)	14
BseGI	GGATG	1 cut(s)	378
BseMI	GCAATG	2 cut(s)	192, 405
BshFI	GGCC	1 cut(s)	311
BsiHKAI	GWGCWC	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	349
BslFI	GGGAC	2 cut(s)	354, 365
BsmFI	GGGAC	2 cut(s)	354, 365
BsnI	GGCC	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	3 cut(s)	100, 137, 268
Bsp19I	CCATGG	1 cut(s)	14
BspACI	CCGC	1 cut(s)	89
BspANI	GGCC	1 cut(s)	311
BspMAI	CTGCAG	1 cut(s)	376
BspPI	GGATC	2 cut(s)	145, 276
BspTI	CTTAAG	1 cut(s)	428
BsrDI	GCAATG	2 cut(s)	192, 405
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	3 cut(s)	100, 137, 268
BssT1I	CCWWGG	1 cut(s)	14
Bst4CI	ACNGT	2 cut(s)	326, 345
BstAFI	CTTAAG	1 cut(s)	428
BstC8I	GCNNGC	2 cut(s)	47, 376
BstDEI	CTNAG	1 cut(s)	272
BstDSI	CCRYGG	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	378
BstKTI	GATC	3 cut(s)	103, 140, 271
BstMBI	GATC	3 cut(s)	100, 137, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	372
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	311
BtgI	CCRYGG	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	378
Cac8I	GCNNGC	2 cut(s)	47, 376
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	3 cut(s)	15, 106, 178
CviJI	RGCY	5 cut(s)	88, 151, 276, 311, 398
CviKI_1	RGCY	5 cut(s)	88, 151, 276, 311, 398
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	1 cut(s)	272
DpnI	GATC	3 cut(s)	102, 139, 270
DpnII	GATC	3 cut(s)	100, 137, 268
Eco130I	CCWWGG	1 cut(s)	14
EcoT14I	CCWWGG	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	14
FaeI	CATG	3 cut(s)	18, 109, 181
FaiI	YATR	9 cut(s)	16, 32, 107, 179, 356, 358, 384, 386, 402
FaqI	GGGAC	2 cut(s)	354, 365
FatI	CATG	3 cut(s)	14, 105, 177
FauNDI	CATATG	1 cut(s)	384
Fnu4HI	GCNGC	1 cut(s)	89
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	1 cut(s)	89
FspBI	CTAG	1 cut(s)	423
GluI	GCNGC	1 cut(s)	89
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	1 cut(s)	349
Hin1II	CATG	3 cut(s)	18, 109, 181
HinfI	GANTC	2 cut(s)	109, 218
HpaII	CCGG	1 cut(s)	349
HphI	GGTGA	1 cut(s)	250
Hpy188I	TCNGA	2 cut(s)	40, 163
HpyAV	CCTTC	3 cut(s)	199, 237, 271
HpyCH4III	ACNGT	2 cut(s)	326, 345
HpyCH4V	TGCA	3 cut(s)	9, 125, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	1 cut(s)	272
Hsp92II	CATG	3 cut(s)	18, 109, 181
Kzo9I	GATC	3 cut(s)	100, 137, 268
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	5 cut(s)	31, 98, 104, 360, 362
LweI	GCATC	1 cut(s)	387
MaeI	CTAG	1 cut(s)	423
MalI	GATC	3 cut(s)	102, 139, 270
MboI	GATC	3 cut(s)	100, 137, 268
MfeI	CAATTG	1 cut(s)	237
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	3 cut(s)	237, 288, 329
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	2 cut(s)	58, 388
MroXI	GAANNNNTTC	1 cut(s)	247
MseI	TTAA	1 cut(s)	429
MslI	CAYNNNNRTG	3 cut(s)	383, 387, 416
MspCI	CTTAAG	1 cut(s)	428
MspI	CCGG	1 cut(s)	349
MspR9I	CCNGG	1 cut(s)	350
MunI	CAATTG	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	308
NciI	CCSGG	1 cut(s)	350
NcoI	CCATGG	1 cut(s)	14
NdeI	CATATG	1 cut(s)	384
NdeII	GATC	3 cut(s)	100, 137, 268
NlaIII	CATG	3 cut(s)	18, 109, 181
PdmI	GAANNNNTTC	1 cut(s)	247
PfeI	GAWTC	2 cut(s)	109, 218
PkrI	GCNGC	1 cut(s)	90
PstI	CTGCAG	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
RseI	CAYNNNNRTG	3 cut(s)	383, 387, 416
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	1 cut(s)	89
Sau3AI	GATC	3 cut(s)	100, 137, 268
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	5 cut(s)	99, 153, 248, 263, 278
SfaNI	GCATC	1 cut(s)	387
SfcI	CTRYAG	1 cut(s)	372
SmiMI	CAYNNNNRTG	3 cut(s)	383, 387, 416
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	3 cut(s)	237, 288, 329
SsiI	CCGC	1 cut(s)	89
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	1 cut(s)	14
TaaI	ACNGT	2 cut(s)	326, 345
TasI	AATT	3 cut(s)	237, 288, 329
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	2 cut(s)	109, 218
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TspDTI	ATGAA	3 cut(s)	181, 335, 401
Vha464I	CTTAAG	1 cut(s)	428
XmnI	GAANNNNTTC	1 cut(s)	247
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.