Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000713

Physical Location & Seq

Genomic Coordinates Forward (+)

45438588 .. 45441120

Gene Structure 2533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1372500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGAAGTGGGAAGTGATTTTCGGCATTGGGACGAATTGATACCTGATGCATTGGGTCTGATTTTCAGCAACCTCACTCTCCAGGAGATACTGACAGTGATCCCGAGGGTTTGCCAATCCTGGAACAAGGCAGTCTTGGGGCCTTACTGCTGGCAAGAGATTGACATTGAGGACTGGAGTAACAGATGCGAACCTCACCACCTCGATCGTATGCTCGAAACGCTGATTGCAAGAAGCTGTGGATCGCTCCGAAAGCTCTCAGTCTCCGGCCTCCAAAATGACAGGATCTTCTCGCACATCGCTGATCATGCTGGTTCCCTTCAGACCTTGAGACTGCCAAGAAGTGAAATTAGCGATTCTATAGTAGAAAAGACTGCTGGAAGGCTCTCTAATATCACTTTCCTGGATCTTAGCTACTGTGGCAAAATTAGTTTTCGTGCTTTAGAGACCATTGGAAAGAACTGTAAAATGCTCGTAGCATTGTGTCGGAATATGCACCCATTGGATACAGCAGGCAAGCCTTTGCTGGATGACGAGGCTTGTGCCATTGCCACTACAATGCCTAGGCTCAAGCACCTTGAGATGGCATACCATCTTATCAGCACAGGAAGTGCTCTCCAAATACTTTCAAGCTGCCACGAGCTTGAGTTTCTGGATTTGAGAGGGTGCTGGGATGTTAAACTTGAGGACAAGTTCCTGAAAGAAAAGTACCCAAAATTGAAGGTTTTGGGGCCTCTTGTTCTGGACTACTATGAGAGGAATGAGTGGGAAGATTGCTCAGACTTCTCCGATGCTTCTGAGTATTTGGCATGGGAATTCGTCGCCGGTGAATTGGATGATTACTATGATGACGACGACGATGAGAGTTATGCCGAGATGTGGGATGGTGAGGAGAGGCTGGACCAGCTTGAGCTGAGGTTCTATGAAGGACTTGGTCACCATGAGGATGCAGGAGGAGTTGGTTGGCCTCCATCACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

327

Amino Acids

37.23

Weight (kDa)

4.64

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08980 AT4G08980 AT4G08980 AT4G08980 AT4G08980
fragaria_vesca	FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36840 FvH4_5g36840 FvH4_5g36840
malus_domestica	MD01G1033400.v1.1 MD08G1186500.v1.1 MD15G1372500.v1.1
prunus_persica	Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1
pyrus_communis	pycom01g06090 pycom08g16030 pycom15g33350
rosa_chinensis	RchiOBHm_Chr2g0112771 RchiOBHm_Chr7g0243381 RchiOBHm_Chr7g0243391
rosa_laevigata	RLG00000000850 RLG00000000851 RLG00000018008
rosa_multiflora	Rmu_co8087500.1_g000001 Rmu_sc0001036.1_g000019 Rmu_sc0001036.1_g000027 Rmu_sc0001708.1_g000033 Rmu_sc0004612.1_g000003 Rmu_sc0024527.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131160 Rroxscaffold_3G00222130 Rroxscaffold_3G00222140
rosa_rugosa	Rorug02G0182300 Rorug02G0182400 Rorug02G0182500 Rorug02G0182600 Rorug07G0318700 Rorug07G0318800 Rorug07G0318900 Rorug07G0319000 Rorug07G0319000
rosa_samantha	Rh2AG237000 Rh2BG249900 Rh2CG241000 Rh2DG244500 Rh7AG475000 Rh7AG475100 Rh7BG444900 Rh7BG445000 Rh7CG491200 Rh7CG491300 Rh7DG459500 Rh7DG459600
rosa_wichuraiana	Rw2G018330 Rw7G039500 Rw7G039520 Rw7G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	94, 250, 293, 414
AcsI	RAATTY	1 cut(s)	815
AcuI	CTGAAG	1 cut(s)	305
AfaI	GTAC	1 cut(s)	710
AfiI	CCNNNNNNNGG	2 cut(s)	583, 879
AgsI	TTSAA	2 cut(s)	630, 721
AjnI	CCWGG	3 cut(s)	81, 119, 402
AluBI	AGCT	7 cut(s)	237, 256, 414, 633, 643, 907, 913
AluI	AGCT	7 cut(s)	237, 256, 414, 633, 643, 907, 913
Alw21I	GWGCWC	1 cut(s)	616
Alw26I	GTCTC	3 cut(s)	268, 325, 440
AlwI	GGATC	4 cut(s)	94, 250, 293, 414
Ama87I	CYCGRG	1 cut(s)	103
AoxI	GGCC	4 cut(s)	140, 268, 731, 965
ApeKI	GCWGC	1 cut(s)	633
ApoI	RAATTY	1 cut(s)	815
AspA2I	CCTAGG	1 cut(s)	563
AspS9I	GGNCC	3 cut(s)	140, 731, 901
AsuHPI	GGTGA	5 cut(s)	188, 839, 899, 929, 966
AvaI	CYCGRG	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	901
AvrII	CCTAGG	1 cut(s)	563
BauI	CACGAG	1 cut(s)	638
Bbv12I	GWGCWC	1 cut(s)	616
BbvCI	CCTCAGC	1 cut(s)	914
BbvI	GCAGC	1 cut(s)	620
BccI	CCATC	4 cut(s)	577, 600, 878, 979
BcgI	CGANNNNNNTGC	2 cut(s)	524, 558
BciT130I	CCWGG	3 cut(s)	83, 121, 404
BciVI	GTATCC	1 cut(s)	499
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	3 cut(s)	268, 325, 440
BfaI	CTAG	1 cut(s)	564
BfmI	CTRYAG	1 cut(s)	360
BfuI	GTATCC	1 cut(s)	499
BisI	GCNGC	1 cut(s)	634
BlnI	CCTAGG	1 cut(s)	563
BlsI	GCNGC	1 cut(s)	635
Bme1390I	CCNGG	3 cut(s)	83, 121, 404
Bme18I	GGWCC	1 cut(s)	901
BmeT110I	CYCGRG	1 cut(s)	103
BmgT120I	GGNCC	3 cut(s)	140, 731, 901
BmiI	GGNNCC	3 cut(s)	141, 316, 732
BmrFI	CCNGG	3 cut(s)	83, 121, 404
BmsI	GCATC	4 cut(s)	37, 176, 781, 937
BpmI	CTGGAG	2 cut(s)	65, 196
Bpu10I	CCTNAGC	1 cut(s)	914
BpuEI	CTTGAG	6 cut(s)	349, 554, 599, 665, 704, 929
BsaI	GGTCTC	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	104, 563
Bsc4I	CCNNNNNNNGG	2 cut(s)	583, 879
Bse118I	RCCGGY	1 cut(s)	824
Bse1I	ACTGG	1 cut(s)	179
Bse3DI	GCAATG	1 cut(s)	546
BseBI	CCWGG	3 cut(s)	83, 121, 404
BseDI	CCNNGG	2 cut(s)	104, 563
BseGI	GGATG	5 cut(s)	535, 679, 841, 889, 952
BseLI	CCNNNNNNNGG	2 cut(s)	583, 879
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	4 cut(s)	273, 789, 792, 905
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	2 cut(s)	905, 969
BseXI	GCAGC	1 cut(s)	620
BseYI	CCCAGC	1 cut(s)	669
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	4 cut(s)	142, 270, 733, 967
BsiEI	CGRYCG	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	616
BsiHKCI	CYCGRG	1 cut(s)	103
BsiSI	CCGG	2 cut(s)	267, 825
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	2 cut(s)	583, 879
BsmAI	GTCTC	3 cut(s)	268, 325, 440
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	4 cut(s)	142, 270, 733, 967
Bso31I	GGTCTC	1 cut(s)	440
BsoBI	CYCGRG	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	6 cut(s)	99, 205, 242, 285, 304, 406
BspANI	GGCC	4 cut(s)	142, 270, 733, 967
BspCNI	CTCAG	4 cut(s)	272, 790, 791, 906
BspLI	GGNNCC	3 cut(s)	141, 316, 732
BspPI	GGATC	4 cut(s)	94, 250, 293, 414
BspTNI	GGTCTC	1 cut(s)	440
BsrDI	GCAATG	1 cut(s)	546
BsrFI	RCCGGY	1 cut(s)	824
BsrI	ACTGG	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	824
BssECI	CCNNGG	2 cut(s)	104, 563
BssMI	GATC	6 cut(s)	99, 205, 242, 285, 304, 406
BssSI	CACGAG	1 cut(s)	638
BssT1I	CCWWGG	1 cut(s)	563
Bst2BI	CACGAG	1 cut(s)	638
Bst2UI	CCWGG	3 cut(s)	83, 121, 404
Bst4CI	ACNGT	3 cut(s)	97, 419, 464
BstC8I	GCNNGC	3 cut(s)	152, 514, 518
BstDEI	CTNAG	6 cut(s)	259, 410, 778, 798, 914, 978
BstEII	GGTNACC	1 cut(s)	935
BstF5I	GGATG	5 cut(s)	535, 679, 841, 889, 952
BstKTI	GATC	6 cut(s)	102, 208, 245, 288, 307, 409
BstMAI	GTCTC	3 cut(s)	268, 325, 440
BstMBI	GATC	6 cut(s)	99, 205, 242, 285, 304, 406
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	5 cut(s)	220, 253, 308, 420, 904
BstNI	CCWGG	3 cut(s)	83, 121, 404
BstPI	GGTNACC	1 cut(s)	935
BstSCI	CCNGG	3 cut(s)	81, 119, 402
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	620
BstX2I	RGATCY	2 cut(s)	285, 406
BstYI	RGATCY	2 cut(s)	285, 406
BsuI	GTATCC	1 cut(s)	499
BsuRI	GGCC	4 cut(s)	142, 270, 733, 967
BtgZI	GCGATG	1 cut(s)	283
BtsCI	GGATG	5 cut(s)	535, 679, 841, 889, 952
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	3 cut(s)	152, 514, 518
Cfr10I	RCCGGY	1 cut(s)	824
Cfr13I	GGNCC	3 cut(s)	140, 731, 901
Csp6I	GTAC	1 cut(s)	709
CviAII	CATG	3 cut(s)	308, 810, 941
CviQI	GTAC	1 cut(s)	709
DdeI	CTNAG	6 cut(s)	259, 410, 778, 798, 914, 978
DpnI	GATC	6 cut(s)	101, 207, 244, 287, 306, 408
DpnII	GATC	6 cut(s)	99, 205, 242, 285, 304, 406
Eco130I	CCWWGG	1 cut(s)	563
Eco31I	GGTCTC	1 cut(s)	440
Eco47I	GGWCC	1 cut(s)	901
Eco57I	CTGAAG	1 cut(s)	305
Eco88I	CYCGRG	1 cut(s)	103
Eco91I	GGTNACC	1 cut(s)	935
EcoO109I	RGGNCCY	2 cut(s)	140, 731
EcoO65I	GGTNACC	1 cut(s)	935
EcoRI	GAATTC	1 cut(s)	815
EcoRII	CCWGG	3 cut(s)	81, 119, 402
EcoT14I	CCWWGG	1 cut(s)	563
EcoT22I	ATGCAT	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	563
FaeI	CATG	3 cut(s)	311, 813, 944
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	3 cut(s)	307, 809, 940
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	1 cut(s)	634
FokI	GGATG	5 cut(s)	542, 686, 848, 896, 959
Fsp4HI	GCNGC	1 cut(s)	634
FspBI	CTAG	1 cut(s)	564
GluI	GCNGC	1 cut(s)	634
GsaI	CCCAGC	1 cut(s)	673
GsuI	CTGGAG	2 cut(s)	65, 196
HaeIII	GGCC	4 cut(s)	142, 270, 733, 967
HapII	CCGG	2 cut(s)	267, 825
Hin1II	CATG	3 cut(s)	311, 813, 944
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	2 cut(s)	267, 825
HphI	GGTGA	5 cut(s)	188, 839, 899, 929, 966
Hpy188I	TCNGA	7 cut(s)	60, 251, 324, 489, 781, 790, 799
Hpy188III	TCNNGA	4 cut(s)	103, 653, 697, 743
Hpy99I	CGWCG	3 cut(s)	824, 857, 860
HpyAV	CCTTC	4 cut(s)	329, 375, 715, 920
HpyCH4III	ACNGT	3 cut(s)	97, 419, 464
HpyCH4V	TGCA	4 cut(s)	50, 230, 496, 950
HpyF10VI	GCNNNNNNNGC	5 cut(s)	220, 253, 308, 420, 904
HpyF3I	CTNAG	6 cut(s)	259, 410, 778, 798, 914, 978
Hsp92II	CATG	3 cut(s)	311, 813, 944
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	6 cut(s)	99, 205, 242, 285, 304, 406
LmnI	GCTCC	1 cut(s)	252
Lsp1109I	GCAGC	1 cut(s)	620
LweI	GCATC	4 cut(s)	37, 176, 781, 937
MaeI	CTAG	1 cut(s)	564
MaeIII	GTNAC	2 cut(s)	179, 935
MalI	GATC	6 cut(s)	101, 207, 244, 287, 306, 408
MboI	GATC	6 cut(s)	99, 205, 242, 285, 304, 406
MboII	GAAGA	2 cut(s)	280, 782
MflI	RGATCY	2 cut(s)	285, 406
MhlI	GDGCHC	1 cut(s)	616
MluCI	AATT	6 cut(s)	35, 348, 426, 716, 815, 830
MmeI	TCCRAC	1 cut(s)	467
Mph1103I	ATGCAT	1 cut(s)	52
MseI	TTAA	1 cut(s)	678
MslI	CAYNNNNRTG	2 cut(s)	557, 945
MspI	CCGG	2 cut(s)	267, 825
MspR9I	CCNGG	3 cut(s)	83, 121, 404
MvaI	CCWGG	3 cut(s)	83, 121, 404
MwoI	GCNNNNNNNGC	5 cut(s)	220, 253, 308, 420, 904
NdeII	GATC	6 cut(s)	99, 205, 242, 285, 304, 406
NlaIII	CATG	3 cut(s)	311, 813, 944
NlaIV	GGNNCC	3 cut(s)	141, 316, 732
NmeAIII	GCCGAG	1 cut(s)	898
NmuCI	GTSAC	1 cut(s)	935
NsiI	ATGCAT	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	356
PflFI	GACNNNGTC	1 cut(s)	933
PfoI	TCCNGGA	3 cut(s)	81, 119, 402
PkrI	GCNGC	1 cut(s)	635
Ple19I	CGATCG	1 cut(s)	208
Psp6I	CCWGG	3 cut(s)	81, 119, 402
PspEI	GGTNACC	1 cut(s)	935
PspFI	CCCAGC	1 cut(s)	669
PspGI	CCWGG	3 cut(s)	81, 119, 402
PspN4I	GGNNCC	3 cut(s)	141, 316, 732
PspPI	GGNCC	3 cut(s)	140, 731, 901
PsuI	RGATCY	2 cut(s)	285, 406
PsyI	GACNNNGTC	1 cut(s)	933
PvuI	CGATCG	1 cut(s)	208
RsaI	GTAC	1 cut(s)	710
RsaNI	GTAC	1 cut(s)	709
RseI	CAYNNNNRTG	2 cut(s)	557, 945
SaqAI	TTAA	1 cut(s)	678
SatI	GCNGC	1 cut(s)	634
Sau3AI	GATC	6 cut(s)	99, 205, 242, 285, 304, 406
Sau96I	GGNCC	3 cut(s)	140, 731, 901
ScrFI	CCNGG	3 cut(s)	83, 121, 404
SduI	GDGCHC	1 cut(s)	616
SfaNI	GCATC	4 cut(s)	37, 176, 781, 937
SfcI	CTRYAG	1 cut(s)	360
SgrAI	CRCCGGYG	1 cut(s)	824
SinI	GGWCC	1 cut(s)	901
SmiMI	CAYNNNNRTG	2 cut(s)	557, 945
SmlI	CTYRAG	6 cut(s)	328, 569, 578, 644, 683, 908
SmoI	CTYRAG	6 cut(s)	328, 569, 578, 644, 683, 908
Sse9I	AATT	6 cut(s)	35, 348, 426, 716, 815, 830
SspMI	CTAG	1 cut(s)	564
StyD4I	CCNGG	3 cut(s)	81, 119, 402
StyI	CCWWGG	1 cut(s)	563
TaaI	ACNGT	3 cut(s)	97, 419, 464
TaqI	TCGA	2 cut(s)	204, 216
TasI	AATT	6 cut(s)	35, 348, 426, 716, 815, 830
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	1 cut(s)	678
Tru9I	TTAA	1 cut(s)	678
TscAI	CASTG	1 cut(s)	102
TseFI	GTSAC	1 cut(s)	935
TseI	GCWGC	1 cut(s)	633
Tsp45I	GTSAC	1 cut(s)	935
TspDTI	ATGAA	1 cut(s)	939
TspRI	CASTG	1 cut(s)	102
Tth111I	GACNNNGTC	1 cut(s)	933
VpaK11BI	GGWCC	1 cut(s)	901
XapI	RAATTY	1 cut(s)	815
XmaJI	CCTAGG	1 cut(s)	563
XspI	CTAG	1 cut(s)	564
Zsp2I	ATGCAT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.