Rorug07G0318800

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
32643642 .. 32647501
3860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0318800.1

Sequence Viewer

Length: 1197 bp
ATGTATTTCAAAGCCATGGCAAGAAGCAGAGGGGAGAAAGAAGACTGCTACGATAGGAGCACGGGTTTGATCAAACTCTTGCAAGTTCTCTCCTTTCTGGTTGTTTTTGTTGTTGGTGTGGTTATTGGATTAGCAACAAGTGCCCACATTAATCGTCATTTCGGTGCACAAACTGAGATCTATTCGTTTATCAATCACTTCTCCTCCTCCTCCTCCAAGGAGACACCACACCAACAAGGGGAGCCCAATTGTACCGTTGATTATTTGAGCATGGAGGCATTTCTGGAGCCTAAGAACTTGACACATGGTATGCCGGATAATGAGCTGTTTTGGAGAGCTTCAATGGTTCCGGCCAAGAAAGAATATCCATATCAGAGAGTGCCTAAAGTGGCTTTCATGTTTATGACTAGAGGACCGTTGCCATTGATGCCATTGTGGGAGAGGTTCTTTCAGGGACACGACAAGCTTTTCTCAGTTTATGTGCATGTAGTTCCAGGGTATAAGCTCAATGCATCAACCACCTCTCCTTTTTATCGACGCCAAATCCCTAGTCAGCCTGTTTCTTGGGGAACCATTACACTGATTGATGCAGAGAGGCGCCTTCTAGCTAATGCCTTGCTTGATTTCTCAAATGAGTGCTTTGTCCTCCTATCTGAGAGTTGCATCCCAGTCTATAACTTTCCTACAGTGTACAAGTATCTCATTGGTGCTAATTATAGCTTTGTTGAATCATACGACGATCCTGGACGTTATGGCCGTGGGCGTTACAGCCGTAAAATGCTTCCCGATATTCAGCTGTATCAGTGGAGGAAGGGGTCTCAGTGGTTTGAACTTCGCCGCACTTTAGCTACTTTAATAGTCTCAGAAGTACAGTACTACACCGTCTTCAGCAAATATTGTTTGCCTGCTTGCTACCCAGATGAGCATTACATGCCAACTTACTTCAATATGTTCCATGGTTCACTGAACTCTAATCGGACTGTGACTTGGGTAGACTGGTCTTTGGGAGGACCACACCCTGCAACTTATGGTGGAGATAATATTACAGAAGATTTTATACGGTCTATAAGGAATAATGGAGCACTTTGTCAGTACAATTCTGAGATGACATCCATTTGTTACCTATTTGCTAGGAAGTTTGCTCCAACAGCATTGGAGCCTCTGCTCGAGCTTGCCTCATCCGTGATGGAATTTTGA

Protein Analysis

398

Amino Acids

45.87

Weight (kDa)

8.02

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 130 - 357 7.1e-80 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 597
AccI GTMKAC 1 cut(s) 993
AciI CCGC 1 cut(s) 838
AclWI GGATC 1 cut(s) 734
AcoI YGGCCR 2 cut(s) 351, 754
AcsI RAATTY 1 cut(s) 1190
AcuI CTGAAG 1 cut(s) 871
AcyI GRCGYC 2 cut(s) 538, 598
AfaI GTAC 5 cut(s) 253, 692, 870, 875, 1094
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 5 cut(s) 10, 342, 728, 830, 946
AjnI CCWGG 2 cut(s) 493, 742
AluBI AGCT 9 cut(s) 325, 338, 466, 505, 608, 720, 796, 848, 1171
AluI AGCT 9 cut(s) 325, 338, 466, 505, 608, 720, 796, 848, 1171
Alw21I GWGCWC 3 cut(s) 62, 169, 1084
Alw26I GTCTC 3 cut(s) 215, 822, 865
Alw44I GTGCAC 1 cut(s) 165
AlwI GGATC 1 cut(s) 734
Ama87I CYCGRG 1 cut(s) 1166
AoxI GGCC 2 cut(s) 351, 754
ApaLI GTGCAC 1 cut(s) 165
ApoI RAATTY 1 cut(s) 1190
ArsI GACNNNNNNTTYG 2 cut(s) 535, 567
AseI ATTAAT 1 cut(s) 150
AspLEI GCGC 1 cut(s) 600
AspS9I GGNCC 2 cut(s) 413, 1010
AvaI CYCGRG 1 cut(s) 1166
AvaII GGWCC 2 cut(s) 413, 1010
BaeGI GKGCMC 2 cut(s) 145, 169
BanI GGYRCC 1 cut(s) 597
BanII GRGCYC 1 cut(s) 246
BarI GAAGNNNNNNTAC 2 cut(s) 1041, 1073
BbsI GAAGAC 2 cut(s) 48, 877
Bbv12I GWGCWC 3 cut(s) 62, 169, 1084
BccI CCATC 1 cut(s) 1180
BceAI ACGGC 2 cut(s) 741, 756
BciT130I CCWGG 2 cut(s) 495, 744
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 3 cut(s) 215, 822, 865
BfaI CTAG 4 cut(s) 408, 549, 605, 1131
BfmI CTRYAG 1 cut(s) 684
BfoI RGCGCY 1 cut(s) 601
BglII AGATCT 1 cut(s) 177
BisI GCNGC 1 cut(s) 838
BlsI GCNGC 1 cut(s) 839
BmcAI AGTACT 1 cut(s) 875
Bme1390I CCNGG 2 cut(s) 495, 744
Bme18I GGWCC 2 cut(s) 413, 1010
BmeT110I CYCGRG 1 cut(s) 1166
BmgT120I GGNCC 2 cut(s) 413, 1010
BmiI GGNNCC 6 cut(s) 243, 288, 348, 571, 599, 1158
BmrFI CCNGG 2 cut(s) 495, 744
BmrI ACTGGG 1 cut(s) 662
BmsI GCATC 4 cut(s) 417, 521, 577, 672
BmuI ACTGGG 1 cut(s) 662
BpiI GAAGAC 2 cut(s) 48, 877
BplI GAGNNNNNCTC 2 cut(s) 1160, 1192
BpmI CTGGAG 1 cut(s) 305
BsaHI GRCGYC 2 cut(s) 538, 598
BsaI GGTCTC 1 cut(s) 822
BsaJI CCNNGG 5 cut(s) 15, 216, 494, 757, 955
BsaXI ACNNNNNCTCC 6 cut(s) 49, 79, 188, 218, 508, 538
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse1I ACTGG 2 cut(s) 668, 1001
BseBI CCWGG 2 cut(s) 495, 744
BseDI CCNNGG 5 cut(s) 15, 216, 494, 757, 955
BseGI GGATG 3 cut(s) 663, 1109, 1178
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMII CTCAG 6 cut(s) 165, 486, 645, 833, 876, 1092
BseNI ACTGG 2 cut(s) 668, 1001
BseRI GAGGAG 4 cut(s) 193, 196, 199, 202
BseSI GKGCMC 2 cut(s) 145, 169
BshFI GGCC 2 cut(s) 353, 756
BshNI GGYRCC 1 cut(s) 597
BsiHKAI GWGCWC 3 cut(s) 62, 169, 1084
BsiHKCI CYCGRG 1 cut(s) 1166
BsiSI CCGG 2 cut(s) 314, 350
BslFI GGGAC 1 cut(s) 468
BslI CCNNNNNNNGG 1 cut(s) 238
BsmAI GTCTC 3 cut(s) 215, 822, 865
BsmFI GGGAC 1 cut(s) 468
BsnI GGCC 2 cut(s) 353, 756
Bso31I GGTCTC 1 cut(s) 822
BsoBI CYCGRG 1 cut(s) 1166
Bsp1286I GDGCHC 5 cut(s) 62, 145, 169, 246, 1084
Bsp1407I TGTACA 1 cut(s) 690
Bsp143I GATC 3 cut(s) 69, 177, 739
Bsp19I CCATGG 2 cut(s) 15, 955
BspACI CCGC 1 cut(s) 838
BspANI GGCC 2 cut(s) 353, 756
BspCNI CTCAG 6 cut(s) 166, 485, 646, 832, 875, 1093
BspLI GGNNCC 6 cut(s) 243, 288, 348, 571, 599, 1158
BspPI GGATC 1 cut(s) 734
BspT107I GGYRCC 1 cut(s) 597
BspTNI GGTCTC 1 cut(s) 822
BsrGI TGTACA 1 cut(s) 690
BsrI ACTGG 2 cut(s) 668, 1001
BssECI CCNNGG 5 cut(s) 15, 216, 494, 757, 955
BssMI GATC 3 cut(s) 69, 177, 739
BssNI GRCGYC 2 cut(s) 538, 598
BssT1I CCWWGG 3 cut(s) 15, 216, 955
Bst2UI CCWGG 2 cut(s) 495, 744
Bst4CI ACNGT 7 cut(s) 256, 417, 688, 873, 883, 982, 1062
BstACI GRCGYC 2 cut(s) 538, 598
BstAPI GCANNNNNTGC 2 cut(s) 140, 931
BstAUI TGTACA 1 cut(s) 690
BstC8I GCNNGC 3 cut(s) 906, 910, 1173
BstDEI CTNAG 7 cut(s) 174, 291, 472, 654, 819, 862, 1101
BstDSI CCRYGG 3 cut(s) 15, 757, 955
BstF5I GGATG 3 cut(s) 663, 1109, 1178
BstH2I RGCGCY 1 cut(s) 601
BstHHI GCGC 1 cut(s) 600
BstKTI GATC 3 cut(s) 72, 180, 742
BstMAI GTCTC 3 cut(s) 215, 822, 865
BstMBI GATC 3 cut(s) 69, 177, 739
BstMWI GCNNNNNNNGC 4 cut(s) 140, 427, 931, 1148
BstNI CCWGG 2 cut(s) 495, 744
BstNSI RCATGY 2 cut(s) 488, 934
BstSCI CCNGG 2 cut(s) 493, 742
BstSFI CTRYAG 1 cut(s) 684
BstSLI GKGCMC 2 cut(s) 145, 169
BstV2I GAAGAC 2 cut(s) 48, 877
BstX2I RGATCY 1 cut(s) 177
BstYI RGATCY 1 cut(s) 177
BsuRI GGCC 2 cut(s) 353, 756
BtgI CCRYGG 3 cut(s) 15, 757, 955
BtsCI GGATG 3 cut(s) 663, 1109, 1178
BtsIMutI CAGTG 5 cut(s) 578, 693, 809, 827, 962
Cac8I GCNNGC 3 cut(s) 906, 910, 1173
CfoI GCGC 1 cut(s) 600
Cfr13I GGNCC 2 cut(s) 413, 1010
CseI GACGC 1 cut(s) 546
Csp6I GTAC 5 cut(s) 252, 691, 869, 874, 1093
CviAII CATG 7 cut(s) 16, 271, 305, 397, 485, 931, 956
CviQI GTAC 5 cut(s) 252, 691, 869, 874, 1093
DdeI CTNAG 7 cut(s) 174, 291, 472, 654, 819, 862, 1101
DinI GGCGCC 1 cut(s) 599
DpnI GATC 3 cut(s) 71, 179, 741
DpnII GATC 3 cut(s) 69, 177, 739
EaeI YGGCCR 2 cut(s) 351, 754
Eco130I CCWWGG 3 cut(s) 15, 216, 955
Eco24I GRGCYC 1 cut(s) 246
Eco31I GGTCTC 1 cut(s) 822
Eco47I GGWCC 2 cut(s) 413, 1010
Eco57I CTGAAG 1 cut(s) 871
Eco88I CYCGRG 1 cut(s) 1166
EcoRII CCWGG 2 cut(s) 493, 742
EcoT14I CCWWGG 3 cut(s) 15, 216, 955
EcoT22I ATGCAT 1 cut(s) 514
EcoT38I GRGCYC 1 cut(s) 246
EgeI GGCGCC 1 cut(s) 599
EheI GGCGCC 1 cut(s) 599
ErhI CCWWGG 3 cut(s) 15, 216, 955
FaeI CATG 7 cut(s) 19, 274, 308, 400, 488, 934, 959
FaqI GGGAC 1 cut(s) 468
FatI CATG 7 cut(s) 15, 270, 304, 396, 484, 930, 955
FbaI TGATCA 1 cut(s) 69
FblI GTMKAC 1 cut(s) 993
Fnu4HI GCNGC 1 cut(s) 838
FokI GGATG 3 cut(s) 650, 1096, 1165
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 838
FspBI CTAG 4 cut(s) 408, 549, 605, 1131
GlaI GCGC 1 cut(s) 599
GluI GCNGC 1 cut(s) 838
GsuI CTGGAG 1 cut(s) 305
HaeII RGCGCY 1 cut(s) 601
HaeIII GGCC 2 cut(s) 353, 756
HapII CCGG 2 cut(s) 314, 350
HgaI GACGC 1 cut(s) 546
HhaI GCGC 1 cut(s) 600
Hin1I GRCGYC 2 cut(s) 538, 598
Hin1II CATG 7 cut(s) 19, 274, 308, 400, 488, 934, 959
Hin6I GCGC 1 cut(s) 598
HinP1I GCGC 1 cut(s) 598
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 1 cut(s) 728
HpaII CCGG 2 cut(s) 314, 350
Hpy166II GTNNAC 4 cut(s) 167, 691, 962, 994
Hpy188I TCNGA 5 cut(s) 375, 655, 865, 978, 1102
Hpy188III TCNNGA 2 cut(s) 284, 785
Hpy8I GTNNAC 4 cut(s) 167, 691, 962, 994
Hpy99I CGWCG 2 cut(s) 540, 740
HpyAV CCTTC 2 cut(s) 611, 805
HpyCH4III ACNGT 7 cut(s) 256, 417, 688, 873, 883, 982, 1062
HpyCH4IV ACGT 1 cut(s) 748
HpyCH4V TGCA 7 cut(s) 82, 167, 484, 512, 590, 663, 1022
HpyF10VI GCNNNNNNNGC 4 cut(s) 140, 427, 931, 1148
HpyF3I CTNAG 7 cut(s) 174, 291, 472, 654, 819, 862, 1101
HpySE526I ACGT 1 cut(s) 748
Hsp92I GRCGYC 2 cut(s) 538, 598
Hsp92II CATG 7 cut(s) 19, 274, 308, 400, 488, 934, 959
HspAI GCGC 1 cut(s) 598
KasI GGCGCC 1 cut(s) 597
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 3 cut(s) 69, 177, 739
LmnI GCTCC 6 cut(s) 57, 241, 286, 1079, 1147, 1156
LweI GCATC 4 cut(s) 417, 521, 577, 672
MaeI CTAG 4 cut(s) 408, 549, 605, 1131
MaeII ACGT 1 cut(s) 748
MaeIII GTNAC 3 cut(s) 764, 982, 1118
MalI GATC 3 cut(s) 71, 179, 741
MboI GATC 3 cut(s) 69, 177, 739
MboII GAAGA 3 cut(s) 53, 877, 1061
MfeI CAATTG 1 cut(s) 247
MflI RGATCY 1 cut(s) 177
MhlI GDGCHC 5 cut(s) 62, 145, 169, 246, 1084
MluCI AATT 4 cut(s) 247, 712, 1096, 1190
Mly113I GGCGCC 1 cut(s) 598
MmeI TCCRAC 1 cut(s) 1169
Mph1103I ATGCAT 1 cut(s) 514
MseI TTAA 2 cut(s) 150, 854
MslI CAYNNNNRTG 2 cut(s) 162, 401
MspA1I CMGCKG 1 cut(s) 796
MspI CCGG 2 cut(s) 314, 350
MspR9I CCNGG 2 cut(s) 495, 744
MunI CAATTG 1 cut(s) 247
MvaI CCWGG 2 cut(s) 495, 744
MwoI GCNNNNNNNGC 4 cut(s) 140, 427, 931, 1148
NarI GGCGCC 1 cut(s) 598
NcoI CCATGG 2 cut(s) 15, 955
NdeII GATC 3 cut(s) 69, 177, 739
NlaIII CATG 7 cut(s) 19, 274, 308, 400, 488, 934, 959
NlaIV GGNNCC 6 cut(s) 243, 288, 348, 571, 599, 1158
NmuCI GTSAC 1 cut(s) 982
NsiI ATGCAT 1 cut(s) 514
NspI RCATGY 2 cut(s) 488, 934
PaeR7I CTCGAG 1 cut(s) 1166
PcsI WCGNNNNNNNCGW 1 cut(s) 754
PfeI GAWTC 1 cut(s) 728
PfoI TCCNGGA 1 cut(s) 742
PkrI GCNGC 1 cut(s) 839
PluTI GGCGCC 1 cut(s) 601
PshBI ATTAAT 1 cut(s) 150
Psp6I CCWGG 2 cut(s) 493, 742
PspGI CCWGG 2 cut(s) 493, 742
PspN4I GGNNCC 6 cut(s) 243, 288, 348, 571, 599, 1158
PspPI GGNCC 2 cut(s) 413, 1010
PspXI VCTCGAGB 1 cut(s) 1166
PsuI RGATCY 1 cut(s) 177
PvuII CAGCTG 1 cut(s) 796
RsaI GTAC 5 cut(s) 253, 692, 870, 875, 1094
RsaNI GTAC 5 cut(s) 252, 691, 869, 874, 1093
RseI CAYNNNNRTG 2 cut(s) 162, 401
SaqAI TTAA 2 cut(s) 150, 854
SatI GCNGC 1 cut(s) 838
Sau3AI GATC 3 cut(s) 69, 177, 739
Sau96I GGNCC 2 cut(s) 413, 1010
ScaI AGTACT 1 cut(s) 875
ScrFI CCNGG 2 cut(s) 495, 744
SduI GDGCHC 5 cut(s) 62, 145, 169, 246, 1084
SfaNI GCATC 4 cut(s) 417, 521, 577, 672
SfcI CTRYAG 1 cut(s) 684
SfoI GGCGCC 1 cut(s) 599
Sfr274I CTCGAG 1 cut(s) 1166
SinI GGWCC 2 cut(s) 413, 1010
SlaI CTCGAG 1 cut(s) 1166
SmiMI CAYNNNNRTG 2 cut(s) 162, 401
SmlI CTYRAG 1 cut(s) 1166
SmoI CTYRAG 1 cut(s) 1166
Sse9I AATT 4 cut(s) 247, 712, 1096, 1190
SsiI CCGC 1 cut(s) 838
SspDI GGCGCC 1 cut(s) 597
SspI AATATT 2 cut(s) 896, 1042
SspMI CTAG 4 cut(s) 408, 549, 605, 1131
StyD4I CCNGG 2 cut(s) 493, 742
StyI CCWWGG 3 cut(s) 15, 216, 955
TaaI ACNGT 7 cut(s) 256, 417, 688, 873, 883, 982, 1062
TaiI ACGT 1 cut(s) 751
TaqI TCGA 2 cut(s) 535, 1167
TasI AATT 4 cut(s) 247, 712, 1096, 1190
TatI WGTACW 4 cut(s) 690, 868, 873, 1092
TauI GCSGC 1 cut(s) 840
TfiI GAWTC 1 cut(s) 728
Tru1I TTAA 2 cut(s) 150, 854
Tru9I TTAA 2 cut(s) 150, 854
TscAI CASTG 5 cut(s) 585, 693, 809, 827, 969
TseFI GTSAC 1 cut(s) 982
Tsp45I GTSAC 1 cut(s) 982
TspDTI ATGAA 1 cut(s) 385
TspGWI ACGGA 1 cut(s) 1171
TspRI CASTG 5 cut(s) 585, 693, 809, 827, 969
VneI GTGCAC 1 cut(s) 165
VpaK11BI GGWCC 2 cut(s) 413, 1010
VspI ATTAAT 1 cut(s) 150
XapI RAATTY 1 cut(s) 1190
XceI RCATGY 2 cut(s) 488, 934
XhoI CTCGAG 1 cut(s) 1166
XmiI GTMKAC 1 cut(s) 993
XspI CTAG 4 cut(s) 408, 549, 605, 1131
ZrmI AGTACT 1 cut(s) 875
Zsp2I ATGCAT 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.