Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000713

Physical Location & Seq

Genomic Coordinates Reverse (-)

60870506 .. 60871563

Gene Structure 1058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G039530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGAAATGGCAAGTGATTTTCGGCATTGGGATGAATTAATACCTGAGGCATTGAGTCTGATATTCAACAGCCTTTCTTTTAAGGAGAAGCTAACAGTGATTCCAATGGTTTGCAAACCATGGAGCAAGGCAGTTATGGGGTCTGACTGCTGGCAAGAGATAGACATTGAGGAATGGAGTGATAAACACCAGCCGCAACACCTTGATCGCATGATTCAAATGCTGGTTGCAAGAAGTTGTGGATCAATGAGAAAGCTGTGTGTTTCCGAACTCCAAAACGACATGATTTTCTCCTTCATTGCTGAACATGCTAATAACCTCCAGACCTTGAGACTGCGAAGAAGTGAAATGAGTGATTCAGTCGTAAAACAGACAATTGGAAGGTTTTCTAACATCACCTTCTTGGATCTTAGCTACTGTGGTAAAATTGGTAGTTGTGCTCTAAAGGCCATTGGAATGAACTGTAAATTGCTCACGGGACTGTGCCGGGACACATATCTATCGTACTCTGCAGGCATCCATATGAATGATGAGGCTTATGCCATTGCCACCACAATGCCTAGACTTAAGCACCTTGAGATGGCATACCAGATCATCAACACAAAAGGGGCTCTTCAAATACTTGAGAGCTGCCCTGAGCTAGAATTTTTGGATTTGACAGGGTGTCGGGATGTTCAGCTTGATGGCAAGTTCTTAAGGGAGAAGTTCCCAAAATTGAAGGTTCTACTGCCTACTGTGGACGACTGTTATGATGAGGACTCAGATGCTTCATCTGAATATGCTTCATCTGTTGTTGAGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

F-box F-box-like LRR_6 Laminin_G_3

Protein Analysis

267

Amino Acids

30.31

Weight (kDa)

5.13

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08980 AT4G08980 AT4G08980 AT4G08980 AT4G08980
fragaria_vesca	FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36840 FvH4_5g36840 FvH4_5g36840
malus_domestica	MD01G1033400.v1.1 MD08G1186500.v1.1 MD15G1372500.v1.1
prunus_persica	Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1
pyrus_communis	pycom01g06090 pycom08g16030 pycom15g33350
rosa_chinensis	RchiOBHm_Chr2g0112771 RchiOBHm_Chr7g0243381 RchiOBHm_Chr7g0243391
rosa_laevigata	RLG00000000850 RLG00000000851 RLG00000018008
rosa_multiflora	Rmu_co8087500.1_g000001 Rmu_sc0001036.1_g000019 Rmu_sc0001036.1_g000027 Rmu_sc0001708.1_g000033 Rmu_sc0004612.1_g000003 Rmu_sc0024527.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131160 Rroxscaffold_3G00222130 Rroxscaffold_3G00222140
rosa_rugosa	Rorug02G0182300 Rorug02G0182400 Rorug02G0182500 Rorug02G0182600 Rorug07G0318700 Rorug07G0318800 Rorug07G0318900 Rorug07G0319000 Rorug07G0319000
rosa_samantha	Rh2AG237000 Rh2BG249900 Rh2CG241000 Rh2DG244500 Rh7AG475000 Rh7AG475100 Rh7BG444900 Rh7BG445000 Rh7CG491200 Rh7CG491300 Rh7DG459500 Rh7DG459600
rosa_wichuraiana	Rw2G018330 Rw7G039500 Rw7G039520 Rw7G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	194
AclWI	GGATC	2 cut(s)	250, 414
AcsI	RAATTY	1 cut(s)	644
AfaI	GTAC	1 cut(s)	506
AfiI	CCNNNNNNNGG	1 cut(s)	580
AflII	CTTAAG	2 cut(s)	566, 694
AgsI	TTSAA	4 cut(s)	67, 218, 617, 718
AhdI	GACNNNNNGTC	1 cut(s)	663
AluBI	AGCT	6 cut(s)	91, 256, 414, 630, 640, 679
AluI	AGCT	6 cut(s)	91, 256, 414, 630, 640, 679
Alw21I	GWGCWC	1 cut(s)	442
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	2 cut(s)	250, 414
AoxI	GGCC	1 cut(s)	447
ApeKI	GCWGC	1 cut(s)	630
ApoI	RAATTY	1 cut(s)	644
AseI	ATTAAT	1 cut(s)	38
Asp700I	GAANNNNTTC	1 cut(s)	385
AsuC2I	CCSGG	1 cut(s)	488
AsuHPI	GGTGA	1 cut(s)	388
AxyI	CCTNAGG	1 cut(s)	45
BanII	GRGCYC	1 cut(s)	613
Bbv12I	GWGCWC	1 cut(s)	442
BbvI	GCAGC	1 cut(s)	617
BccI	CCATC	2 cut(s)	574, 677
BcnI	CCSGG	1 cut(s)	488
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	2 cut(s)	561, 641
BfmI	CTRYAG	1 cut(s)	510
BfrI	CTTAAG	2 cut(s)	566, 694
BisI	GCNGC	2 cut(s)	194, 631
BlsI	GCNGC	2 cut(s)	195, 632
Bme1390I	CCNGG	1 cut(s)	488
BmeRI	GACNNNNNGTC	1 cut(s)	663
BmrFI	CCNGG	1 cut(s)	488
BmsI	GCATC	2 cut(s)	525, 754
BpmI	CTGGAG	1 cut(s)	305
Bpu10I	CCTNAGC	1 cut(s)	636
BpuEI	CTTGAG	3 cut(s)	349, 596, 644
BpuMI	CCSGG	1 cut(s)	488
BsaJI	CCNNGG	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	1 cut(s)	580
Bse21I	CCTNAGG	1 cut(s)	45
Bse3DI	GCAATG	2 cut(s)	297, 543
BseDI	CCNNGG	1 cut(s)	119
BseGI	GGATG	3 cut(s)	37, 516, 676
BseLI	CCNNNNNNNGG	1 cut(s)	580
BseMI	GCAATG	2 cut(s)	297, 543
BseMII	CTCAG	3 cut(s)	36, 627, 774
BseXI	GCAGC	1 cut(s)	617
BshFI	GGCC	1 cut(s)	449
BsiHKAI	GWGCWC	1 cut(s)	442
BsiSI	CCGG	1 cut(s)	487
BslFI	GGGAC	2 cut(s)	492, 503
BslI	CCNNNNNNNGG	1 cut(s)	580
BsmAI	GTCTC	1 cut(s)	325
BsmFI	GGGAC	2 cut(s)	492, 503
BsnI	GGCC	1 cut(s)	449
Bsp1286I	GDGCHC	2 cut(s)	442, 613
Bsp143I	GATC	4 cut(s)	205, 242, 406, 591
Bsp19I	CCATGG	1 cut(s)	119
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	1 cut(s)	449
BspCNI	CTCAG	3 cut(s)	37, 628, 773
BspMAI	CTGCAG	1 cut(s)	514
BspPI	GGATC	2 cut(s)	250, 414
BspQI	GCTCTTC	1 cut(s)	618
BspTI	CTTAAG	2 cut(s)	566, 694
BsrDI	GCAATG	2 cut(s)	297, 543
BssECI	CCNNGG	1 cut(s)	119
BssMI	GATC	4 cut(s)	205, 242, 406, 591
BssT1I	CCWWGG	1 cut(s)	119
Bst4CI	ACNGT	6 cut(s)	97, 419, 464, 483, 736, 746
Bst6I	CTCTTC	1 cut(s)	618
BstAFI	CTTAAG	2 cut(s)	566, 694
BstC8I	GCNNGC	2 cut(s)	152, 514
BstDEI	CTNAG	4 cut(s)	45, 410, 636, 760
BstDSI	CCRYGG	1 cut(s)	119
BstF5I	GGATG	3 cut(s)	37, 516, 676
BstKTI	GATC	4 cut(s)	208, 245, 409, 594
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	4 cut(s)	205, 242, 406, 591
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 446
BstNSI	RCATGY	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	486
BstSFI	CTRYAG	1 cut(s)	510
BstV1I	GCAGC	1 cut(s)	617
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
Bsu36I	CCTNAGG	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	449
BtgI	CCRYGG	1 cut(s)	119
BtsCI	GGATG	3 cut(s)	37, 516, 676
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	2 cut(s)	152, 514
Csp6I	GTAC	1 cut(s)	505
CviAII	CATG	4 cut(s)	120, 211, 283, 308
CviQI	GTAC	1 cut(s)	505
DdeI	CTNAG	4 cut(s)	45, 410, 636, 760
DpnI	GATC	4 cut(s)	207, 244, 408, 593
DpnII	GATC	4 cut(s)	205, 242, 406, 591
DriI	GACNNNNNGTC	1 cut(s)	663
Eam1104I	CTCTTC	1 cut(s)	618
Eam1105I	GACNNNNNGTC	1 cut(s)	663
EarI	CTCTTC	1 cut(s)	618
Eco130I	CCWWGG	1 cut(s)	119
Eco24I	GRGCYC	1 cut(s)	613
Eco81I	CCTNAGG	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	119
EcoT38I	GRGCYC	1 cut(s)	613
ErhI	CCWWGG	1 cut(s)	119
FaeI	CATG	4 cut(s)	123, 214, 286, 311
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FaqI	GGGAC	2 cut(s)	492, 503
FatI	CATG	4 cut(s)	119, 210, 282, 307
FauNDI	CATATG	1 cut(s)	522
Fnu4HI	GCNGC	2 cut(s)	194, 631
FokI	GGATG	3 cut(s)	44, 503, 683
FriOI	GRGCYC	1 cut(s)	613
Fsp4HI	GCNGC	2 cut(s)	194, 631
FspBI	CTAG	2 cut(s)	561, 641
GluI	GCNGC	2 cut(s)	194, 631
GsuI	CTGGAG	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	449
HapII	CCGG	1 cut(s)	487
Hin1II	CATG	4 cut(s)	123, 214, 286, 311
HinfI	GANTC	5 cut(s)	55, 100, 214, 356, 758
HpaII	CCGG	1 cut(s)	487
HphI	GGTGA	1 cut(s)	388
Hpy166II	GTNNAC	1 cut(s)	739
Hpy188I	TCNGA	5 cut(s)	60, 145, 268, 763, 775
Hpy188III	TCNNGA	2 cut(s)	322, 668
Hpy8I	GTNNAC	1 cut(s)	739
HpyAV	CCTTC	4 cut(s)	304, 375, 409, 712
HpyCH4III	ACNGT	6 cut(s)	97, 419, 464, 483, 736, 746
HpyCH4V	TGCA	3 cut(s)	114, 230, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 446
HpyF3I	CTNAG	4 cut(s)	45, 410, 636, 760
Hsp92II	CATG	4 cut(s)	123, 214, 286, 311
Kzo9I	GATC	4 cut(s)	205, 242, 406, 591
LguI	GCTCTTC	1 cut(s)	618
LmnI	GCTCC	1 cut(s)	123
Lsp1109I	GCAGC	1 cut(s)	617
LweI	GCATC	2 cut(s)	525, 754
MaeI	CTAG	2 cut(s)	561, 641
MalI	GATC	4 cut(s)	207, 244, 408, 593
MboI	GATC	4 cut(s)	205, 242, 406, 591
MboII	GAAGA	2 cut(s)	351, 605
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	2 cut(s)	442, 613
MluCI	AATT	6 cut(s)	35, 375, 426, 467, 644, 713
MlyI	GAGTC	2 cut(s)	64, 752
MnlI	CCTC	6 cut(s)	40, 163, 329, 526, 748, 790
MroXI	GAANNNNTTC	1 cut(s)	385
MseI	TTAA	4 cut(s)	38, 81, 567, 695
MslI	CAYNNNNRTG	5 cut(s)	30, 455, 521, 525, 554
MspCI	CTTAAG	2 cut(s)	566, 694
MspI	CCGG	1 cut(s)	487
MspR9I	CCNGG	1 cut(s)	488
MunI	CAATTG	1 cut(s)	375
MwoI	GCNNNNNNNGC	2 cut(s)	308, 446
NciI	CCSGG	1 cut(s)	488
NcoI	CCATGG	1 cut(s)	119
NdeI	CATATG	1 cut(s)	522
NdeII	GATC	4 cut(s)	205, 242, 406, 591
NlaIII	CATG	4 cut(s)	123, 214, 286, 311
NspI	RCATGY	1 cut(s)	311
PciSI	GCTCTTC	1 cut(s)	618
PdmI	GAANNNNTTC	1 cut(s)	385
PfeI	GAWTC	3 cut(s)	100, 214, 356
PkrI	GCNGC	2 cut(s)	195, 632
PleI	GAGTC	2 cut(s)	63, 752
PpsI	GAGTC	2 cut(s)	63, 752
PshBI	ATTAAT	1 cut(s)	38
PstI	CTGCAG	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	1 cut(s)	506
RsaNI	GTAC	1 cut(s)	505
RseI	CAYNNNNRTG	5 cut(s)	30, 455, 521, 525, 554
SapI	GCTCTTC	1 cut(s)	618
SaqAI	TTAA	4 cut(s)	38, 81, 567, 695
SatI	GCNGC	2 cut(s)	194, 631
Sau3AI	GATC	4 cut(s)	205, 242, 406, 591
SchI	GAGTC	2 cut(s)	64, 752
ScrFI	CCNGG	1 cut(s)	488
SduI	GDGCHC	2 cut(s)	442, 613
SfaNI	GCATC	2 cut(s)	525, 754
SfcI	CTRYAG	1 cut(s)	510
SmiMI	CAYNNNNRTG	5 cut(s)	30, 455, 521, 525, 554
SmlI	CTYRAG	5 cut(s)	328, 566, 575, 623, 694
SmoI	CTYRAG	5 cut(s)	328, 566, 575, 623, 694
Sse9I	AATT	6 cut(s)	35, 375, 426, 467, 644, 713
SsiI	CCGC	1 cut(s)	194
SspMI	CTAG	2 cut(s)	561, 641
StyD4I	CCNGG	1 cut(s)	486
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	6 cut(s)	97, 419, 464, 483, 736, 746
TasI	AATT	6 cut(s)	35, 375, 426, 467, 644, 713
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	3 cut(s)	100, 214, 356
Tru1I	TTAA	4 cut(s)	38, 81, 567, 695
Tru9I	TTAA	4 cut(s)	38, 81, 567, 695
TscAI	CASTG	1 cut(s)	102
TseI	GCWGC	1 cut(s)	630
TspDTI	ATGAA	6 cut(s)	48, 286, 473, 539, 759, 774
TspRI	CASTG	1 cut(s)	102
Vha464I	CTTAAG	2 cut(s)	566, 694
VspI	ATTAAT	1 cut(s)	38
XapI	RAATTY	1 cut(s)	644
XceI	RCATGY	1 cut(s)	311
XmnI	GAANNNNTTC	1 cut(s)	385
XspI	CTAG	2 cut(s)	561, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.