Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000713

Physical Location & Seq

Genomic Coordinates Reverse (-)

51879717 .. 51880707

Gene Structure 991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG445000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGGGTCTGACTGCTGGCAAGAGATAGACATTGAGGAATGGAGTAATGAATGCCAGCCGCAACACCTTGATCGCATGATTCAAATGCTGGTGGCAAGAAGTTGTGGATCAATGAGAAAGCTGTGTGTTTCCGAACTCCAAAACGACATGATTTTCACCTTCATTGCTGAACATGCTAATACCCTTCTGACCTTGAGACTGCGAAGAAGTCAAATGAGTGATTCAGTGGTAGAACAGACAATTGGAAGGTTTTCTAATATCACCTTCTTGGATCTTAGCTACTGTGGTAAAATTGGTAGTCGTGCTCTAAAGGCCATCGGAATGAACTGTAAATTGCTCATGGGACTGTGCCGGAACAGATATCCATGGTACACGGCAGGCATCCTTATGAATATGAAGAATGAGGCTCATGCCATTGCCACCACAATGCCTAGACTGAAGCACCTTGAGATGGCATACCATCTCATCAACACACAAGAGGCTCTTCAAATACTTGAGAGCTGCCCTGAGCTCGAATTTTTGGATTTGAGAGGATGTTGGGATGTTCAGCTTGATGATAAGTTCTTAGGGGAGAAGTTCCCAAAATTGAAGGTTCTAGGCCCTCCTGCGGACTACTACTATGATGAGGACTTGGAATGTTGCATGAATAACTCAGATGCTTCTTCTGACGGTTCCCCCTTCGAATATGAGGATCTATCTGAGGAATATCTGTCCGATGAGTATTTGTCTGACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

F-box F-box-like LRR_6 Laminin_G_3

Protein Analysis

245

Amino Acids

28.25

Weight (kDa)

4.68

Isoelectric Point (pI)

54.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08980 AT4G08980 AT4G08980 AT4G08980 AT4G08980
fragaria_vesca	FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36840 FvH4_5g36840 FvH4_5g36840
malus_domestica	MD01G1033400.v1.1 MD08G1186500.v1.1 MD15G1372500.v1.1
prunus_persica	Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1
pyrus_communis	pycom01g06090 pycom08g16030 pycom15g33350
rosa_chinensis	RchiOBHm_Chr2g0112771 RchiOBHm_Chr7g0243381 RchiOBHm_Chr7g0243391
rosa_laevigata	RLG00000000850 RLG00000000851 RLG00000018008
rosa_multiflora	Rmu_co8087500.1_g000001 Rmu_sc0001036.1_g000019 Rmu_sc0001036.1_g000027 Rmu_sc0001708.1_g000033 Rmu_sc0004612.1_g000003 Rmu_sc0024527.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131160 Rroxscaffold_3G00222130 Rroxscaffold_3G00222140
rosa_rugosa	Rorug02G0182300 Rorug02G0182400 Rorug02G0182500 Rorug02G0182600 Rorug07G0318700 Rorug07G0318800 Rorug07G0318900 Rorug07G0319000 Rorug07G0319000
rosa_samantha	Rh2AG237000 Rh2BG249900 Rh2CG241000 Rh2DG244500 Rh7AG475000 Rh7AG475100 Rh7BG444900 Rh7BG445000 Rh7CG491200 Rh7CG491300 Rh7DG459500 Rh7DG459600
rosa_wichuraiana	Rw2G018330 Rw7G039500 Rw7G039520 Rw7G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	59, 608
AclWI	GGATC	3 cut(s)	115, 279, 699
AcsI	RAATTY	1 cut(s)	515
AcuI	CTGAAG	1 cut(s)	458
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	2 cut(s)	451, 607
AgsI	TTSAA	3 cut(s)	83, 488, 589
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AluBI	AGCT	5 cut(s)	121, 279, 501, 511, 550
AluI	AGCT	5 cut(s)	121, 279, 501, 511, 550
Alw21I	GWGCWC	2 cut(s)	307, 513
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	3 cut(s)	115, 279, 699
AoxI	GGCC	2 cut(s)	312, 598
ApeKI	GCWGC	1 cut(s)	501
ApoI	RAATTY	1 cut(s)	515
Asp700I	GAANNNNTTC	1 cut(s)	250
AspS9I	GGNCC	1 cut(s)	599
AsuHPI	GGTGA	2 cut(s)	148, 253
AsuII	TTCGAA	1 cut(s)	681
BanII	GRGCYC	1 cut(s)	513
Bbv12I	GWGCWC	2 cut(s)	307, 513
BbvI	GCAGC	1 cut(s)	488
BccI	CCATC	3 cut(s)	323, 445, 468
BceAI	ACGGC	1 cut(s)	390
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	2 cut(s)	432, 596
BisI	GCNGC	2 cut(s)	59, 502
BlsI	GCNGC	2 cut(s)	60, 503
BmgT120I	GGNCC	1 cut(s)	599
BmiI	GGNNCC	1 cut(s)	673
BmsI	GCATC	2 cut(s)	390, 646
Bpu10I	CCTNAGC	1 cut(s)	507
Bpu14I	TTCGAA	1 cut(s)	681
BpuEI	CTTGAG	3 cut(s)	214, 467, 515
BsaJI	CCNNGG	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	2 cut(s)	451, 607
Bse3DI	GCAATG	2 cut(s)	162, 414
BseDI	CCNNGG	1 cut(s)	365
BseGI	GGATG	3 cut(s)	381, 539, 547
BseLI	CCNNNNNNNGG	2 cut(s)	451, 607
BseMI	GCAATG	2 cut(s)	162, 414
BseMII	CTCAG	3 cut(s)	498, 666, 690
BseXI	GCAGC	1 cut(s)	488
BshFI	GGCC	2 cut(s)	314, 600
BsiHKAI	GWGCWC	2 cut(s)	307, 513
BsiSI	CCGG	1 cut(s)	352
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	451, 607
BsmAI	GTCTC	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	357
BsmI	GAATGC	1 cut(s)	56
BsnI	GGCC	2 cut(s)	314, 600
Bsp119I	TTCGAA	1 cut(s)	681
Bsp1286I	GDGCHC	2 cut(s)	307, 513
Bsp143I	GATC	4 cut(s)	70, 107, 271, 691
Bsp19I	CCATGG	1 cut(s)	365
BspACI	CCGC	2 cut(s)	59, 608
BspANI	GGCC	2 cut(s)	314, 600
BspCNI	CTCAG	3 cut(s)	499, 665, 691
BspLI	GGNNCC	1 cut(s)	673
BspPI	GGATC	3 cut(s)	115, 279, 699
BspQI	GCTCTTC	1 cut(s)	489
BspT104I	TTCGAA	1 cut(s)	681
BsrDI	GCAATG	2 cut(s)	162, 414
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	4 cut(s)	70, 107, 271, 691
BssT1I	CCWWGG	1 cut(s)	365
Bst4CI	ACNGT	4 cut(s)	284, 329, 348, 671
Bst6I	CTCTTC	1 cut(s)	489
BstBI	TTCGAA	1 cut(s)	681
BstC8I	GCNNGC	3 cut(s)	17, 56, 379
BstDEI	CTNAG	5 cut(s)	275, 507, 565, 652, 699
BstDSI	CCRYGG	1 cut(s)	365
BstF5I	GGATG	3 cut(s)	381, 539, 547
BstKTI	GATC	4 cut(s)	73, 110, 274, 694
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	4 cut(s)	70, 107, 271, 691
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 311
BstNSI	RCATGY	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	488
BstX2I	RGATCY	2 cut(s)	271, 691
BstYI	RGATCY	2 cut(s)	271, 691
BsuRI	GGCC	2 cut(s)	314, 600
BtgI	CCRYGG	1 cut(s)	365
BtsCI	GGATG	3 cut(s)	381, 539, 547
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	3 cut(s)	17, 56, 379
Cfr13I	GGNCC	1 cut(s)	599
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	7 cut(s)	76, 148, 173, 340, 366, 410, 643
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	5 cut(s)	275, 507, 565, 652, 699
DpnI	GATC	4 cut(s)	72, 109, 273, 693
DpnII	GATC	4 cut(s)	70, 107, 271, 691
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
Ecl136II	GAGCTC	1 cut(s)	511
Eco130I	CCWWGG	1 cut(s)	365
Eco24I	GRGCYC	1 cut(s)	513
Eco32I	GATATC	1 cut(s)	362
Eco53kI	GAGCTC	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	458
EcoICRI	GAGCTC	1 cut(s)	511
EcoO109I	RGGNCCY	1 cut(s)	599
EcoRV	GATATC	1 cut(s)	362
EcoT14I	CCWWGG	1 cut(s)	365
EcoT38I	GRGCYC	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	7 cut(s)	79, 151, 176, 343, 369, 413, 646
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	7 cut(s)	75, 147, 172, 339, 365, 409, 642
Fnu4HI	GCNGC	2 cut(s)	59, 502
FokI	GGATG	3 cut(s)	368, 546, 554
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	2 cut(s)	59, 502
FspBI	CTAG	2 cut(s)	432, 596
GluI	GCNGC	2 cut(s)	59, 502
HaeIII	GGCC	2 cut(s)	314, 600
HapII	CCGG	1 cut(s)	352
Hin1II	CATG	7 cut(s)	79, 151, 176, 343, 369, 413, 646
HinfI	GANTC	2 cut(s)	79, 221
HpaII	CCGG	1 cut(s)	352
HphI	GGTGA	2 cut(s)	148, 253
Hpy166II	GTNNAC	1 cut(s)	372
Hpy188I	TCNGA	9 cut(s)	10, 133, 189, 320, 655, 667, 700, 715, 730
Hpy8I	GTNNAC	1 cut(s)	372
HpyAV	CCTTC	6 cut(s)	169, 194, 240, 274, 583, 688
HpyCH4III	ACNGT	4 cut(s)	284, 329, 348, 671
HpyCH4V	TGCA	1 cut(s)	642
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 311
HpyF3I	CTNAG	5 cut(s)	275, 507, 565, 652, 699
Hsp92II	CATG	7 cut(s)	79, 151, 176, 343, 369, 413, 646
Kzo9I	GATC	4 cut(s)	70, 107, 271, 691
LguI	GCTCTTC	1 cut(s)	489
LpnPI	CCDG	6 cut(s)	68, 74, 363, 365, 519, 618
Lsp1109I	GCAGC	1 cut(s)	488
LweI	GCATC	2 cut(s)	390, 646
MaeI	CTAG	2 cut(s)	432, 596
MalI	GATC	4 cut(s)	72, 109, 273, 693
MboI	GATC	4 cut(s)	70, 107, 271, 691
MboII	GAAGA	4 cut(s)	216, 409, 476, 654
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	2 cut(s)	271, 691
MhlI	GDGCHC	2 cut(s)	307, 513
MluCI	AATT	5 cut(s)	240, 291, 332, 515, 584
MnlI	CCTC	8 cut(s)	28, 397, 472, 524, 612, 619, 682, 694
MroXI	GAANNNNTTC	1 cut(s)	250
MslI	CAYNNNNRTG	3 cut(s)	320, 386, 425
MspI	CCGG	1 cut(s)	352
MunI	CAATTG	1 cut(s)	240
Mva1269I	GAATGC	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	173, 311
NcoI	CCATGG	1 cut(s)	365
NdeII	GATC	4 cut(s)	70, 107, 271, 691
NlaIII	CATG	7 cut(s)	79, 151, 176, 343, 369, 413, 646
NlaIV	GGNNCC	1 cut(s)	673
NspI	RCATGY	1 cut(s)	176
NspV	TTCGAA	1 cut(s)	681
PciSI	GCTCTTC	1 cut(s)	489
PctI	GAATGC	1 cut(s)	56
PdmI	GAANNNNTTC	1 cut(s)	250
PfeI	GAWTC	2 cut(s)	79, 221
PkrI	GCNGC	2 cut(s)	60, 503
Psp124BI	GAGCTC	1 cut(s)	513
PspN4I	GGNNCC	1 cut(s)	673
PspPI	GGNCC	1 cut(s)	599
PsuI	RGATCY	2 cut(s)	271, 691
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	3 cut(s)	320, 386, 425
SacI	GAGCTC	1 cut(s)	513
SapI	GCTCTTC	1 cut(s)	489
SatI	GCNGC	2 cut(s)	59, 502
Sau3AI	GATC	4 cut(s)	70, 107, 271, 691
Sau96I	GGNCC	1 cut(s)	599
SduI	GDGCHC	2 cut(s)	307, 513
SfaNI	GCATC	2 cut(s)	390, 646
SfuI	TTCGAA	1 cut(s)	681
SmiMI	CAYNNNNRTG	3 cut(s)	320, 386, 425
SmlI	CTYRAG	3 cut(s)	193, 446, 494
SmoI	CTYRAG	3 cut(s)	193, 446, 494
Sse9I	AATT	5 cut(s)	240, 291, 332, 515, 584
SsiI	CCGC	2 cut(s)	59, 608
SspMI	CTAG	2 cut(s)	432, 596
SstI	GAGCTC	1 cut(s)	513
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	4 cut(s)	284, 329, 348, 671
TaqI	TCGA	2 cut(s)	513, 681
TasI	AATT	5 cut(s)	240, 291, 332, 515, 584
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	2 cut(s)	79, 221
TscAI	CASTG	1 cut(s)	231
TseI	GCWGC	1 cut(s)	501
TspDTI	ATGAA	6 cut(s)	63, 151, 338, 404, 410, 659
TspRI	CASTG	1 cut(s)	231
XapI	RAATTY	1 cut(s)	515
XceI	RCATGY	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	250
XspI	CTAG	2 cut(s)	432, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.