Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000713

Physical Location & Seq

Genomic Coordinates Reverse (-)

51873917 .. 51875009

Gene Structure 1093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG444900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGGGCCTTACTGCTGGCAAGAGGTAGACATTGAGGAATGGAGTGATATATGCCCAGAACCTCAGCACCTTGATCGTATGATACAAATGCTGATTTCAAGAAGCTGTGGATCTCTCAGAAAGCTTTGTGTTTCAGGCCTTAAAAATGACATGATCTTCTCCTTCATTGCTGAACATTCTAATTCCCTTCAGACCTTGAGTCTGCCAAGAAGTGAAATAAGTGATTCGATAGTGGAACAAACAATTGGAAGGCTTTCTCACATCACTTTCTTGGATCTTAGCTGCTGTGGGAAGATTGGTTTTCGTGCTTTGGAAGTCATAGGAAAGAACTGTAAATTGCTTGTGAAGTTGTTCAGGAACATGCATCCATTAGATATAGTTGGCATGCCTATTGTGGATGATGAGGCTAATGCCATTGCTGCCACAATGCCTAGACTGAAGCACCTTGAGATGGCATACCATGTCATTAGCACGGAGAGTGCACTTCAGATACTCAAGAGCTGCACCGAGCTTGAGTTGTTGGATTTGAGAGGGTGTTGGGGTGTTAAGCTTGATGATGAAAAGTACTTAGAGAAGAAGTTTCCGAAAGTGAAGGTTTTAGGGCCTCTTGTTCAGGATCGCTATGAGGAAAATGAGTGGGATGACAACTCGGATTACTCGGATGCTTCTTCCGAGTATCTAGCCTGGGAATTTGTGGATGATGACGATGATTTTGATGATGATGGGAGTTATGATGACATGTGGGATGGTGATGGAAGACTTGAGCAGCTTGAGTTGAGGTTCTATCAAGGAAATGAACATGAGACTGAAGGAGGGTTTGGTTGGCCTCCATCTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

F-box F-box-like LRR_6 Laminin_G_3

Protein Analysis

279

Amino Acids

31.91

Weight (kDa)

4.44

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08980 AT4G08980 AT4G08980 AT4G08980 AT4G08980
fragaria_vesca	FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36840 FvH4_5g36840 FvH4_5g36840
malus_domestica	MD01G1033400.v1.1 MD08G1186500.v1.1 MD15G1372500.v1.1
prunus_persica	Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1
pyrus_communis	pycom01g06090 pycom08g16030 pycom15g33350
rosa_chinensis	RchiOBHm_Chr2g0112771 RchiOBHm_Chr7g0243381 RchiOBHm_Chr7g0243391
rosa_laevigata	RLG00000000850 RLG00000000851 RLG00000018008
rosa_multiflora	Rmu_co8087500.1_g000001 Rmu_sc0001036.1_g000019 Rmu_sc0001036.1_g000027 Rmu_sc0001708.1_g000033 Rmu_sc0004612.1_g000003 Rmu_sc0024527.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131160 Rroxscaffold_3G00222130 Rroxscaffold_3G00222140
rosa_rugosa	Rorug02G0182300 Rorug02G0182400 Rorug02G0182500 Rorug02G0182600 Rorug07G0318700 Rorug07G0318800 Rorug07G0318900 Rorug07G0319000 Rorug07G0319000
rosa_samantha	Rh2AG237000 Rh2BG249900 Rh2CG241000 Rh2DG244500 Rh7AG475000 Rh7AG475100 Rh7BG444900 Rh7BG445000 Rh7CG491200 Rh7CG491300 Rh7DG459500 Rh7DG459600
rosa_wichuraiana	Rw2G018330 Rw7G039500 Rw7G039520 Rw7G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	27
AclWI	GGATC	3 cut(s)	118, 282, 624
AcsI	RAATTY	1 cut(s)	689
AcuI	CTGAAG	4 cut(s)	173, 458, 470, 828
AfaI	GTAC	1 cut(s)	566
AfiI	CCNNNNNNNGG	1 cut(s)	451
AflIII	ACRYGT	1 cut(s)	738
AgsI	TTSAA	1 cut(s)	99
AhdI	GACNNNNNGTC	1 cut(s)	198
AjnI	CCWGG	1 cut(s)	683
AjuI	GAANNNNNNNTTGG	4 cut(s)	228, 260, 801, 833
AluBI	AGCT	7 cut(s)	105, 124, 282, 501, 511, 550, 769
AluI	AGCT	7 cut(s)	105, 124, 282, 501, 511, 550, 769
Alw21I	GWGCWC	1 cut(s)	484
Alw26I	GTCTC	1 cut(s)	797
Alw44I	GTGCAC	1 cut(s)	480
AlwI	GGATC	3 cut(s)	118, 282, 624
AoxI	GGCC	4 cut(s)	5, 136, 602, 824
ApaLI	GTGCAC	1 cut(s)	480
ApeKI	GCWGC	4 cut(s)	282, 419, 501, 766
ApoI	RAATTY	1 cut(s)	689
ArsI	GACNNNNNNTTYG	2 cut(s)	695, 727
Asp700I	GAANNNNTTC	2 cut(s)	253, 350
AspS9I	GGNCC	2 cut(s)	5, 602
AsuHPI	GGTGA	1 cut(s)	761
BaeGI	GKGCMC	1 cut(s)	484
BbsI	GAAGAC	1 cut(s)	763
Bbv12I	GWGCWC	1 cut(s)	484
BbvCI	CCTCAGC	1 cut(s)	63
BbvI	GCAGC	4 cut(s)	269, 406, 488, 778
BccI	CCATC	5 cut(s)	445, 716, 740, 746, 838
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BciT130I	CCWGG	1 cut(s)	685
BcoDI	GTCTC	1 cut(s)	797
BfaI	CTAG	2 cut(s)	432, 680
BisI	GCNGC	4 cut(s)	283, 420, 502, 767
BlsI	GCNGC	4 cut(s)	284, 421, 503, 768
BmcAI	AGTACT	1 cut(s)	566
Bme1390I	CCNGG	1 cut(s)	685
BmeRI	GACNNNNNGTC	1 cut(s)	198
BmgT120I	GGNCC	2 cut(s)	5, 602
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	685
BmsI	GCATC	2 cut(s)	373, 652
BpiI	GAAGAC	1 cut(s)	763
Bpu10I	CCTNAGC	1 cut(s)	63
BpuEI	CTTGAG	6 cut(s)	217, 467, 479, 533, 782, 791
BsaJI	CCNNGG	1 cut(s)	684
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
Bse3DI	GCAATG	2 cut(s)	165, 414
BseBI	CCWGG	1 cut(s)	685
BseDI	CCNNGG	1 cut(s)	684
BseGI	GGATG	6 cut(s)	364, 403, 646, 667, 703, 751
BseLI	CCNNNNNNNGG	1 cut(s)	451
BseMI	GCAATG	2 cut(s)	165, 414
BseMII	CTCAG	2 cut(s)	77, 130
BseSI	GKGCMC	1 cut(s)	484
BseXI	GCAGC	4 cut(s)	269, 406, 488, 778
BsgI	GTGCAG	1 cut(s)	487
BshFI	GGCC	4 cut(s)	7, 138, 604, 826
BsiHKAI	GWGCWC	1 cut(s)	484
BslI	CCNNNNNNNGG	1 cut(s)	451
BsmAI	GTCTC	1 cut(s)	797
BsnI	GGCC	4 cut(s)	7, 138, 604, 826
Bsp1286I	GDGCHC	1 cut(s)	484
Bsp143I	GATC	5 cut(s)	73, 110, 153, 274, 616
BspANI	GGCC	4 cut(s)	7, 138, 604, 826
BspCNI	CTCAG	2 cut(s)	76, 129
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	3 cut(s)	118, 282, 624
BsrDI	GCAATG	2 cut(s)	165, 414
BssECI	CCNNGG	1 cut(s)	684
BssMI	GATC	5 cut(s)	73, 110, 153, 274, 616
Bst2UI	CCWGG	1 cut(s)	685
Bst4CI	ACNGT	1 cut(s)	332
BstC8I	GCNNGC	2 cut(s)	17, 386
BstDEI	CTNAG	4 cut(s)	63, 116, 278, 568
BstF5I	GGATG	6 cut(s)	364, 403, 646, 667, 703, 751
BstKTI	GATC	5 cut(s)	76, 113, 156, 277, 619
BstMAI	GTCTC	1 cut(s)	797
BstMBI	GATC	5 cut(s)	73, 110, 153, 274, 616
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstNI	CCWGG	1 cut(s)	685
BstNSI	RCATGY	3 cut(s)	364, 388, 742
BstSCI	CCNGG	1 cut(s)	683
BstSLI	GKGCMC	1 cut(s)	484
BstV1I	GCAGC	4 cut(s)	269, 406, 488, 778
BstV2I	GAAGAC	1 cut(s)	763
BstX2I	RGATCY	2 cut(s)	110, 274
BstYI	RGATCY	2 cut(s)	110, 274
BsuRI	GGCC	4 cut(s)	7, 138, 604, 826
BtsCI	GGATG	6 cut(s)	364, 403, 646, 667, 703, 751
Cac8I	GCNNGC	2 cut(s)	17, 386
Cfr13I	GGNCC	2 cut(s)	5, 602
Csp6I	GTAC	1 cut(s)	565
CviAII	CATG	6 cut(s)	151, 361, 385, 461, 739, 800
CviQI	GTAC	1 cut(s)	565
DdeI	CTNAG	4 cut(s)	63, 116, 278, 568
DpnI	GATC	5 cut(s)	75, 112, 155, 276, 618
DpnII	GATC	5 cut(s)	73, 110, 153, 274, 616
DriI	GACNNNNNGTC	1 cut(s)	198
Eam1105I	GACNNNNNGTC	1 cut(s)	198
Eco147I	AGGCCT	1 cut(s)	138
Eco57I	CTGAAG	4 cut(s)	173, 458, 470, 828
EcoO109I	RGGNCCY	2 cut(s)	5, 602
EcoRII	CCWGG	1 cut(s)	683
EcoT22I	ATGCAT	1 cut(s)	366
FaeI	CATG	6 cut(s)	154, 364, 388, 464, 742, 803
FatI	CATG	6 cut(s)	150, 360, 384, 460, 738, 799
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	4 cut(s)	283, 420, 502, 767
FokI	GGATG	6 cut(s)	351, 410, 653, 674, 710, 758
Fsp4HI	GCNGC	4 cut(s)	283, 420, 502, 767
FspBI	CTAG	2 cut(s)	432, 680
GluI	GCNGC	4 cut(s)	283, 420, 502, 767
HaeIII	GGCC	4 cut(s)	7, 138, 604, 826
Hin1II	CATG	6 cut(s)	154, 364, 388, 464, 742, 803
HindIII	AAGCTT	2 cut(s)	122, 548
HinfI	GANTC	2 cut(s)	199, 224
HphI	GGTGA	1 cut(s)	761
Hpy166II	GTNNAC	2 cut(s)	28, 482
Hpy188I	TCNGA	7 cut(s)	119, 192, 489, 585, 652, 661, 673
Hpy188III	TCNNGA	4 cut(s)	99, 355, 496, 614
Hpy8I	GTNNAC	2 cut(s)	28, 482
HpyAV	CCTTC	5 cut(s)	172, 197, 243, 586, 803
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4V	TGCA	3 cut(s)	364, 482, 504
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	4 cut(s)	63, 116, 278, 568
Hsp92II	CATG	6 cut(s)	154, 364, 388, 464, 742, 803
Kzo9I	GATC	5 cut(s)	73, 110, 153, 274, 616
LpnPI	CCDG	6 cut(s)	69, 120, 340, 599, 670, 697
Lsp1109I	GCAGC	4 cut(s)	269, 406, 488, 778
LweI	GCATC	2 cut(s)	373, 652
MaeI	CTAG	2 cut(s)	432, 680
MalI	GATC	5 cut(s)	75, 112, 155, 276, 618
MboI	GATC	5 cut(s)	73, 110, 153, 274, 616
MboII	GAAGA	5 cut(s)	148, 304, 586, 660, 768
MfeI	CAATTG	1 cut(s)	243
MflI	RGATCY	2 cut(s)	110, 274
MhlI	GDGCHC	1 cut(s)	484
MluCI	AATT	4 cut(s)	181, 243, 335, 689
MlyI	GAGTC	1 cut(s)	208
MmeI	TCCRAC	1 cut(s)	501
Mph1103I	ATGCAT	1 cut(s)	366
MroXI	GAANNNNTTC	2 cut(s)	253, 350
MseI	TTAA	2 cut(s)	141, 546
MspR9I	CCNGG	1 cut(s)	685
MunI	CAATTG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	685
MwoI	GCNNNNNNNGC	1 cut(s)	419
NdeII	GATC	5 cut(s)	73, 110, 153, 274, 616
NlaIII	CATG	6 cut(s)	154, 364, 388, 464, 742, 803
NlaIV	GGNNCC	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	366
NspI	RCATGY	3 cut(s)	364, 388, 742
PaeI	GCATGC	1 cut(s)	388
PceI	AGGCCT	1 cut(s)	138
PciI	ACATGT	1 cut(s)	738
PdmI	GAANNNNTTC	2 cut(s)	253, 350
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	4 cut(s)	284, 421, 503, 768
PleI	GAGTC	1 cut(s)	207
PpsI	GAGTC	1 cut(s)	207
PscI	ACATGT	1 cut(s)	738
Psp6I	CCWGG	1 cut(s)	683
PspGI	CCWGG	1 cut(s)	683
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	5, 602
PsuI	RGATCY	2 cut(s)	110, 274
RsaI	GTAC	1 cut(s)	566
RsaNI	GTAC	1 cut(s)	565
SaqAI	TTAA	2 cut(s)	141, 546
SatI	GCNGC	4 cut(s)	283, 420, 502, 767
Sau3AI	GATC	5 cut(s)	73, 110, 153, 274, 616
Sau96I	GGNCC	2 cut(s)	5, 602
ScaI	AGTACT	1 cut(s)	566
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	1 cut(s)	685
SduI	GDGCHC	1 cut(s)	484
SfaNI	GCATC	2 cut(s)	373, 652
SmlI	CTYRAG	6 cut(s)	196, 446, 494, 512, 761, 770
SmoI	CTYRAG	6 cut(s)	196, 446, 494, 512, 761, 770
SphI	GCATGC	1 cut(s)	388
Sse9I	AATT	4 cut(s)	181, 243, 335, 689
SseBI	AGGCCT	1 cut(s)	138
SspMI	CTAG	2 cut(s)	432, 680
StuI	AGGCCT	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	683
TaaI	ACNGT	1 cut(s)	332
TaqI	TCGA	1 cut(s)	227
TasI	AATT	4 cut(s)	181, 243, 335, 689
TatI	WGTACW	1 cut(s)	564
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	2 cut(s)	141, 546
Tru9I	TTAA	2 cut(s)	141, 546
TseI	GCWGC	4 cut(s)	282, 419, 501, 766
TspDTI	ATGAA	3 cut(s)	154, 573, 810
TspGWI	ACGGA	1 cut(s)	488
VneI	GTGCAC	1 cut(s)	480
XapI	RAATTY	1 cut(s)	689
XceI	RCATGY	3 cut(s)	364, 388, 742
XmiI	GTMKAC	1 cut(s)	27
XmnI	GAANNNNTTC	2 cut(s)	253, 350
XspI	CTAG	2 cut(s)	432, 680
ZrmI	AGTACT	1 cut(s)	566
Zsp2I	ATGCAT	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.