Rroxscaffold_2G00131160

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000713
Physical Location & Seq
Forward (+)
67709933 .. 67712850
2918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00131160.1

Sequence Viewer

Length: 963 bp
ATGGAGGAAGACGGTGAGTTTCGGAATTGGGATGAGCTCATACCCGATGCACTTGGGCTTATATTTAAGAATCTAACACTGGAAGAGACCCTGACTGTAATCCCAAGGGTCTGCAAGTCCTGGGGAAGAGTAGTTGCAGAACCTTATTGCTGGCAGGAGATTAACATTGTGCAATGGAGCAAGCTCCGGTCGCCTCAGATTGTACACCGAATGCTTCAGATGCTTATTGCCAGGAGCTCAGGTTCGCCCCGCAAGCTCTGCGTTTCTGGGCCTCTCGATGACCAGAGTCTTTTGTTTATCGCAGACCATGCCAAATCTCTTCAGACGTTGAAGCTGCCAAGAAGTGCAGTAAGTGATTTGATAGTGGAACAGGTTGCCGCGAAGCTCTCTACCATAACTTCCTTGGATTTAAGCTACTGCAAAACTATTGGAGCCCCTGCACTTGAGGCAATTGGAAAGCACTGTAAACATCTCACAAAGTTGCAGAGATGCATGTATGGATGGGAACTTGACAAGGACTCTCAAGACAAGGAGGGTTTTGCAATAGCAGCCACGATGCCAAAACTCAAGCACCTTGAGTTACGCTTTATGCGTATTAGTACAGAACCTGTGCTTCAGATACTATTGAACTGTCCTGAGCTCCATTTGTTAAACGTGCTAGGGTGCTACAGTGTAAAAATTGACGAAAAGTTTGTCAAGAAGTTCCCAGGGCTGAATGTGGTTGGACCAGGTTCAGGCAATGAGGGCTGGGACGATTGCTCCACTTTCTCAGTTTCTTCCAGCTACTTAGATTGGGACTTGATGGGCTGTGTAATCAACGATGATGATTATGAGGTAGAGTATGATTATTTTGATGAAGATGAGGCCTGGGAAGACGATCAAAGTATGGCGGATGTAGAATTTAGCTTCTATGATGGTTTTTATCTTGATAATGCTGGGTTTGATTGGCCCCCAACTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

320

Amino Acids

36.31

Weight (kDa)

4.62

Isoelectric Point (pI)

43.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 380
AciI CCGC 3 cut(s) 250, 378, 890
AcsI RAATTY 1 cut(s) 899
AcuI CTGAAG 3 cut(s) 200, 305, 599
AfaI GTAC 2 cut(s) 204, 601
AfiI CCNNNNNNNGG 1 cut(s) 734
AgsI TTSAA 2 cut(s) 331, 628
AjnI CCWGG 5 cut(s) 119, 230, 706, 727, 866
AloI GAACNNNNNNTCC 2 cut(s) 226, 258
Alw21I GWGCWC 3 cut(s) 39, 239, 642
Alw26I GTCTC 1 cut(s) 80
AlwNI CAGNNNCTG 1 cut(s) 608
AoxI GGCC 3 cut(s) 269, 864, 947
ApeKI GCWGC 2 cut(s) 334, 548
ApoI RAATTY 1 cut(s) 899
ArsI GACNNNNNNTTYG 4 cut(s) 674, 678, 706, 710
AspS9I GGNCC 3 cut(s) 269, 725, 948
AsuHPI GGTGA 1 cut(s) 26
AvaII GGWCC 1 cut(s) 725
BanII GRGCYC 4 cut(s) 39, 239, 436, 642
BbsI GAAGAC 2 cut(s) 15, 879
Bbv12I GWGCWC 3 cut(s) 39, 239, 642
BbvI GCAGC 2 cut(s) 321, 560
BccI CCATC 3 cut(s) 495, 796, 908
BciT130I CCWGG 5 cut(s) 121, 232, 708, 729, 868
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 1 cut(s) 659
BfmI CTRYAG 1 cut(s) 667
BisI GCNGC 3 cut(s) 335, 378, 549
BlsI GCNGC 3 cut(s) 336, 379, 550
Bme1390I CCNGG 5 cut(s) 121, 232, 708, 729, 868
Bme18I GGWCC 1 cut(s) 725
BmgT120I GGNCC 3 cut(s) 269, 725, 948
BmiI GGNNCC 2 cut(s) 433, 950
BmrFI CCNGG 5 cut(s) 121, 232, 708, 729, 868
BmsI GCATC 4 cut(s) 37, 210, 479, 546
BoxI GACNNNNGTC 1 cut(s) 285
BpiI GAAGAC 2 cut(s) 15, 879
Bpu10I CCTNAGC 2 cut(s) 238, 636
BpuEI CTTGAG 4 cut(s) 464, 507, 551, 596
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 6 cut(s) 104, 120, 402, 706, 707, 867
BsaWI WCCGGW 1 cut(s) 186
BsaXI ACNNNNNCTCC 4 cut(s) 226, 256, 743, 773
Bsc4I CCNNNNNNNGG 1 cut(s) 734
Bse1I ACTGG 1 cut(s) 84
Bse3DI GCAATG 2 cut(s) 179, 745
BseBI CCWGG 5 cut(s) 121, 232, 708, 729, 868
BseDI CCNNGG 6 cut(s) 104, 120, 402, 706, 707, 867
BseGI GGATG 3 cut(s) 37, 506, 898
BseLI CCNNNNNNNGG 1 cut(s) 734
BseMI GCAATG 2 cut(s) 179, 745
BseMII CTCAG 4 cut(s) 209, 252, 627, 783
BseNI ACTGG 1 cut(s) 84
BseXI GCAGC 2 cut(s) 321, 560
BseYI CCCAGC 2 cut(s) 747, 935
BsgI GTGCAG 2 cut(s) 366, 423
Bsh1236I CGCG 1 cut(s) 380
Bsh1285I CGRYCG 1 cut(s) 191
BshFI GGCC 3 cut(s) 271, 866, 949
BsiEI CGRYCG 1 cut(s) 191
BsiHKAI GWGCWC 3 cut(s) 39, 239, 642
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 2 cut(s) 764, 809
BslI CCNNNNNNNGG 1 cut(s) 734
BsmAI GTCTC 1 cut(s) 80
BsmFI GGGAC 2 cut(s) 764, 809
BsmI GAATGC 1 cut(s) 216
BsnI GGCC 3 cut(s) 271, 866, 949
Bso31I GGTCTC 1 cut(s) 80
Bsp1286I GDGCHC 4 cut(s) 39, 239, 436, 642
Bsp1407I TGTACA 1 cut(s) 202
Bsp143I GATC 1 cut(s) 877
BspACI CCGC 3 cut(s) 250, 378, 890
BspANI GGCC 3 cut(s) 271, 866, 949
BspCNI CTCAG 4 cut(s) 208, 251, 628, 782
BspFNI CGCG 1 cut(s) 380
BspLI GGNNCC 2 cut(s) 433, 950
BspTNI GGTCTC 1 cut(s) 80
BsrDI GCAATG 2 cut(s) 179, 745
BsrGI TGTACA 1 cut(s) 202
BsrI ACTGG 1 cut(s) 84
BssECI CCNNGG 6 cut(s) 104, 120, 402, 706, 707, 867
BssMI GATC 1 cut(s) 877
BssT1I CCWWGG 2 cut(s) 104, 402
Bst2UI CCWGG 5 cut(s) 121, 232, 708, 729, 868
Bst4CI ACNGT 5 cut(s) 14, 97, 464, 632, 671
Bst6I CTCTTC 3 cut(s) 78, 121, 324
BstAPI GCANNNNNTGC 2 cut(s) 258, 308
BstAUI TGTACA 1 cut(s) 202
BstC8I GCNNGC 3 cut(s) 152, 182, 254
BstDEI CTNAG 5 cut(s) 195, 238, 636, 769, 787
BstF5I GGATG 3 cut(s) 37, 506, 898
BstFNI CGCG 1 cut(s) 380
BstKTI GATC 1 cut(s) 880
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 1 cut(s) 877
BstMCI CGRYCG 1 cut(s) 191
BstMWI GCNNNNNNNGC 8 cut(s) 190, 220, 253, 258, 308, 446, 548, 744
BstNI CCWGG 5 cut(s) 121, 232, 708, 729, 868
BstNSI RCATGY 1 cut(s) 496
BstPAI GACNNNNGTC 1 cut(s) 285
BstSCI CCNGG 5 cut(s) 119, 230, 706, 727, 866
BstSFI CTRYAG 1 cut(s) 667
BstUI CGCG 1 cut(s) 380
BstV1I GCAGC 2 cut(s) 321, 560
BstV2I GAAGAC 2 cut(s) 15, 879
BsuRI GGCC 3 cut(s) 271, 866, 949
BtsCI GGATG 3 cut(s) 37, 506, 898
BtsIMutI CAGTG 3 cut(s) 77, 460, 676
Cac8I GCNNGC 3 cut(s) 152, 182, 254
CaiI CAGNNNCTG 1 cut(s) 608
Cfr13I GGNCC 3 cut(s) 269, 725, 948
CsiI ACCWGGT 1 cut(s) 727
Csp6I GTAC 2 cut(s) 203, 600
CviAII CATG 2 cut(s) 308, 493
CviQI GTAC 2 cut(s) 203, 600
DdeI CTNAG 5 cut(s) 195, 238, 636, 769, 787
DpnI GATC 1 cut(s) 879
DpnII GATC 1 cut(s) 877
Eam1104I CTCTTC 3 cut(s) 78, 121, 324
EarI CTCTTC 3 cut(s) 78, 121, 324
EciI GGCGGA 1 cut(s) 905
Ecl136II GAGCTC 3 cut(s) 37, 237, 640
Eco130I CCWWGG 2 cut(s) 104, 402
Eco147I AGGCCT 1 cut(s) 866
Eco24I GRGCYC 4 cut(s) 39, 239, 436, 642
Eco31I GGTCTC 1 cut(s) 80
Eco47I GGWCC 1 cut(s) 725
Eco53kI GAGCTC 3 cut(s) 37, 237, 640
Eco57I CTGAAG 3 cut(s) 200, 305, 599
EcoICRI GAGCTC 3 cut(s) 37, 237, 640
EcoRII CCWGG 5 cut(s) 119, 230, 706, 727, 866
EcoT14I CCWWGG 2 cut(s) 104, 402
EcoT22I ATGCAT 1 cut(s) 494
EcoT38I GRGCYC 4 cut(s) 39, 239, 436, 642
ErhI CCWWGG 2 cut(s) 104, 402
FaeI CATG 2 cut(s) 311, 496
FaqI GGGAC 2 cut(s) 764, 809
FatI CATG 2 cut(s) 307, 492
FauI CCCGC 1 cut(s) 257
Fnu4HI GCNGC 3 cut(s) 335, 378, 549
FokI GGATG 3 cut(s) 44, 513, 905
FriOI GRGCYC 4 cut(s) 39, 239, 436, 642
Fsp4HI GCNGC 3 cut(s) 335, 378, 549
FspBI CTAG 1 cut(s) 659
GluI GCNGC 3 cut(s) 335, 378, 549
GsaI CCCAGC 2 cut(s) 751, 939
HaeIII GGCC 3 cut(s) 271, 866, 949
HapII CCGG 1 cut(s) 187
Hin1II CATG 2 cut(s) 311, 496
HinfI GANTC 3 cut(s) 70, 286, 518
HpaII CCGG 1 cut(s) 187
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 2 cut(s) 205, 467
Hpy188I TCNGA 5 cut(s) 24, 198, 219, 324, 618
Hpy188III TCNNGA 5 cut(s) 275, 524, 635, 697, 926
Hpy8I GTNNAC 2 cut(s) 205, 467
HpyCH4III ACNGT 5 cut(s) 14, 97, 464, 632, 671
HpyCH4IV ACGT 2 cut(s) 326, 654
HpyF10VI GCNNNNNNNGC 8 cut(s) 190, 220, 253, 258, 308, 446, 548, 744
HpyF3I CTNAG 5 cut(s) 195, 238, 636, 769, 787
HpySE526I ACGT 2 cut(s) 326, 654
Hsp92II CATG 2 cut(s) 311, 496
Kzo9I GATC 1 cut(s) 877
LmnI GCTCC 6 cut(s) 177, 189, 234, 431, 645, 764
Lsp1109I GCAGC 2 cut(s) 321, 560
LweI GCATC 4 cut(s) 37, 210, 479, 546
MabI ACCWGGT 1 cut(s) 727
MaeI CTAG 1 cut(s) 659
MaeII ACGT 2 cut(s) 326, 654
MaeIII GTNAC 1 cut(s) 579
MalI GATC 1 cut(s) 879
MboI GATC 1 cut(s) 877
MboII GAAGA 7 cut(s) 20, 95, 138, 311, 768, 869, 884
MfeI CAATTG 1 cut(s) 450
MhlI GDGCHC 4 cut(s) 39, 239, 436, 642
MluCI AATT 4 cut(s) 25, 450, 678, 899
MlyI GAGTC 2 cut(s) 295, 512
MmeI TCCRAC 1 cut(s) 703
MnlI CCTC 7 cut(s) 204, 282, 439, 526, 736, 826, 856
Mph1103I ATGCAT 1 cut(s) 494
MseI TTAA 4 cut(s) 66, 162, 410, 650
MspI CCGG 1 cut(s) 187
MspR9I CCNGG 5 cut(s) 121, 232, 708, 729, 868
MunI CAATTG 1 cut(s) 450
Mva1269I GAATGC 1 cut(s) 216
MvaI CCWGG 5 cut(s) 121, 232, 708, 729, 868
MvnI CGCG 1 cut(s) 380
MwoI GCNNNNNNNGC 8 cut(s) 190, 220, 253, 258, 308, 446, 548, 744
NdeII GATC 1 cut(s) 877
NlaIII CATG 2 cut(s) 311, 496
NlaIV GGNNCC 2 cut(s) 433, 950
NsiI ATGCAT 1 cut(s) 494
NspI RCATGY 1 cut(s) 496
PasI CCCWGGG 1 cut(s) 707
PceI AGGCCT 1 cut(s) 866
PcsI WCGNNNNNNNCGW 1 cut(s) 589
PctI GAATGC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 70
PkrI GCNGC 3 cut(s) 336, 379, 550
PleI GAGTC 2 cut(s) 294, 512
PpsI GAGTC 2 cut(s) 294, 512
PshAI GACNNNNGTC 1 cut(s) 285
Psp124BI GAGCTC 3 cut(s) 39, 239, 642
Psp6I CCWGG 5 cut(s) 119, 230, 706, 727, 866
PspFI CCCAGC 2 cut(s) 747, 935
PspGI CCWGG 5 cut(s) 119, 230, 706, 727, 866
PspN4I GGNNCC 2 cut(s) 433, 950
PspPI GGNCC 3 cut(s) 269, 725, 948
PstNI CAGNNNCTG 1 cut(s) 608
RsaI GTAC 2 cut(s) 204, 601
RsaNI GTAC 2 cut(s) 203, 600
SacI GAGCTC 3 cut(s) 39, 239, 642
SaqAI TTAA 4 cut(s) 66, 162, 410, 650
SatI GCNGC 3 cut(s) 335, 378, 549
Sau3AI GATC 1 cut(s) 877
Sau96I GGNCC 3 cut(s) 269, 725, 948
SchI GAGTC 2 cut(s) 295, 512
ScrFI CCNGG 5 cut(s) 121, 232, 708, 729, 868
SduI GDGCHC 4 cut(s) 39, 239, 436, 642
SexAI ACCWGGT 1 cut(s) 727
SfaNI GCATC 4 cut(s) 37, 210, 479, 546
SfcI CTRYAG 1 cut(s) 667
SinI GGWCC 1 cut(s) 725
SmlI CTYRAG 4 cut(s) 443, 522, 566, 575
SmoI CTYRAG 4 cut(s) 443, 522, 566, 575
Sse9I AATT 4 cut(s) 25, 450, 678, 899
SseBI AGGCCT 1 cut(s) 866
SsiI CCGC 3 cut(s) 250, 378, 890
SspMI CTAG 1 cut(s) 659
SstI GAGCTC 3 cut(s) 39, 239, 642
StuI AGGCCT 1 cut(s) 866
StyD4I CCNGG 5 cut(s) 119, 230, 706, 727, 866
StyI CCWWGG 2 cut(s) 104, 402
TaaI ACNGT 5 cut(s) 14, 97, 464, 632, 671
TaiI ACGT 2 cut(s) 329, 657
TaqI TCGA 1 cut(s) 276
TasI AATT 4 cut(s) 25, 450, 678, 899
TatI WGTACW 2 cut(s) 202, 599
TauI GCSGC 1 cut(s) 380
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 4 cut(s) 66, 162, 410, 650
Tru9I TTAA 4 cut(s) 66, 162, 410, 650
TscAI CASTG 3 cut(s) 84, 467, 676
TseI GCWGC 2 cut(s) 334, 548
TspDTI ATGAA 1 cut(s) 870
TspRI CASTG 3 cut(s) 84, 467, 676
VpaK11BI GGWCC 1 cut(s) 725
XapI RAATTY 1 cut(s) 899
XceI RCATGY 1 cut(s) 496
XcmI CCANNNNNNNNNTGG 1 cut(s) 400
XspI CTAG 1 cut(s) 659
Zsp2I ATGCAT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.