Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000713

Physical Location & Seq

Genomic Coordinates Forward (+)

32749068 .. 32750093

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g33350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGCTCGAAATGCTGATTGCAAGAAGCTGTGGATCGCTCCGAAAGCTCTCAGTCTCCGGCCTCCAAAATGATAGGATCTTCTCCCACATCGCTGATCATGCTGGTTCCCTTCAGACCTTGAGGCTGCCAAGAAGTGAAATTAGTGATTCTATAGTAGAAAAGACTGCTGGAAGGCTCTCTAATATCACTTTCCTGGATCTTAGCTACTGTGGAAAAATTAGTTTTCGTGCTTTAGAGACCATTGGAAAGAACTGTAAAATGCTCGTAGCATTGTGTCGGAACATGCACCCATTGGATACAGCAGGAAAGCCTTTGCTGGATGACGAGGCTTGTGCCATTGCCACCACAATGCCTAGGCTCAAGCACCTTGAGATGGCATACCATCTTATCAGCACAGAAAGTGCTCTCCAAATACTCTCAAGCTGCCGCGAGCTTGAGTTTCTGGATTTGAGAGGGTGCTGGGATGTTAAACTTGAGGACAAGTTCCTGAAAGAAAAGTACCCAAAATTGAAGGTTTTGGGGCCTCTTGTTCTGGACTACTATGAGAGGAATGAGTGGGAAGATTGCTCAGACTTCTCCGATGCTTCAGAGTATTTGGCATGGGAATTCGTAGCCGGTGAATTGGATGATTACTATGATGACGACGATGAGAGTTATGCCGAGATGTGGGATGGTGAGGAGAGGCTGGACCAGTTTGAGCTGAGGTTCTATGAAGGACTTGGTCACCATGAGGATGCAGGAGGAGTTGGTTGGCCTCCATCACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

256

Amino Acids

29.03

Weight (kDa)

4.68

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08980 AT4G08980 AT4G08980 AT4G08980 AT4G08980
fragaria_vesca	FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36840 FvH4_5g36840 FvH4_5g36840
malus_domestica	MD01G1033400.v1.1 MD08G1186500.v1.1 MD15G1372500.v1.1
prunus_persica	Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1
pyrus_communis	pycom01g06090 pycom08g16030 pycom15g33350
rosa_chinensis	RchiOBHm_Chr2g0112771 RchiOBHm_Chr7g0243381 RchiOBHm_Chr7g0243391
rosa_laevigata	RLG00000000850 RLG00000000851 RLG00000018008
rosa_multiflora	Rmu_co8087500.1_g000001 Rmu_sc0001036.1_g000019 Rmu_sc0001036.1_g000027 Rmu_sc0001708.1_g000033 Rmu_sc0004612.1_g000003 Rmu_sc0024527.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131160 Rroxscaffold_3G00222130 Rroxscaffold_3G00222140
rosa_rugosa	Rorug02G0182300 Rorug02G0182400 Rorug02G0182500 Rorug02G0182600 Rorug07G0318700 Rorug07G0318800 Rorug07G0318900 Rorug07G0319000 Rorug07G0319000
rosa_samantha	Rh2AG237000 Rh2BG249900 Rh2CG241000 Rh2DG244500 Rh7AG475000 Rh7AG475100 Rh7BG444900 Rh7BG445000 Rh7CG491200 Rh7CG491300 Rh7DG459500 Rh7DG459600
rosa_wichuraiana	Rw2G018330 Rw7G039500 Rw7G039520 Rw7G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	429
AciI	CCGC	1 cut(s)	427
AclWI	GGATC	3 cut(s)	40, 83, 204
AcsI	RAATTY	1 cut(s)	605
AcuI	CTGAAG	2 cut(s)	95, 570
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	2 cut(s)	373, 666
AgsI	TTSAA	1 cut(s)	511
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	6 cut(s)	27, 46, 204, 423, 433, 700
AluI	AGCT	6 cut(s)	27, 46, 204, 423, 433, 700
Alw21I	GWGCWC	1 cut(s)	406
Alw26I	GTCTC	2 cut(s)	58, 230
AlwI	GGATC	3 cut(s)	40, 83, 204
AoxI	GGCC	3 cut(s)	58, 521, 752
ApeKI	GCWGC	2 cut(s)	124, 423
ApoI	RAATTY	1 cut(s)	605
AspA2I	CCTAGG	1 cut(s)	353
AspS9I	GGNCC	2 cut(s)	521, 688
AsuHPI	GGTGA	4 cut(s)	629, 686, 716, 753
AvaII	GGWCC	1 cut(s)	688
AvrII	CCTAGG	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	406
BbvCI	CCTCAGC	1 cut(s)	701
BbvI	GCAGC	2 cut(s)	111, 410
BccI	CCATC	4 cut(s)	367, 390, 665, 766
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BciT130I	CCWGG	1 cut(s)	194
BciVI	GTATCC	1 cut(s)	289
BclI	TGATCA	1 cut(s)	94
BcoDI	GTCTC	2 cut(s)	58, 230
BfaI	CTAG	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	150
BfuI	GTATCC	1 cut(s)	289
BisI	GCNGC	3 cut(s)	125, 424, 427
BlnI	CCTAGG	1 cut(s)	353
BlsI	GCNGC	3 cut(s)	126, 425, 428
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	1 cut(s)	688
BmgT120I	GGNCC	2 cut(s)	521, 688
BmiI	GGNNCC	2 cut(s)	106, 522
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	2 cut(s)	571, 724
Bpu10I	CCTNAGC	1 cut(s)	701
BpuEI	CTTGAG	6 cut(s)	139, 344, 389, 403, 455, 494
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	2 cut(s)	373, 666
Bse118I	RCCGGY	1 cut(s)	614
Bse1I	ACTGG	1 cut(s)	691
Bse3DI	GCAATG	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	353
BseGI	GGATG	5 cut(s)	325, 469, 631, 676, 739
BseLI	CCNNNNNNNGG	2 cut(s)	373, 666
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	3 cut(s)	63, 582, 692
BseNI	ACTGG	1 cut(s)	691
BseRI	GAGGAG	2 cut(s)	692, 756
BseXI	GCAGC	2 cut(s)	111, 410
BseYI	CCCAGC	1 cut(s)	459
Bsh1236I	CGCG	1 cut(s)	429
BshFI	GGCC	3 cut(s)	60, 523, 754
BsiHKAI	GWGCWC	1 cut(s)	406
BsiSI	CCGG	2 cut(s)	57, 615
BslI	CCNNNNNNNGG	2 cut(s)	373, 666
BsmAI	GTCTC	2 cut(s)	58, 230
BsnI	GGCC	3 cut(s)	60, 523, 754
Bso31I	GGTCTC	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	4 cut(s)	32, 75, 94, 196
BspACI	CCGC	1 cut(s)	427
BspANI	GGCC	3 cut(s)	60, 523, 754
BspCNI	CTCAG	3 cut(s)	62, 581, 693
BspFNI	CGCG	1 cut(s)	429
BspLI	GGNNCC	2 cut(s)	106, 522
BspPI	GGATC	3 cut(s)	40, 83, 204
BspTNI	GGTCTC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	614
BsrI	ACTGG	1 cut(s)	691
BssAI	RCCGGY	1 cut(s)	614
BssECI	CCNNGG	1 cut(s)	353
BssMI	GATC	4 cut(s)	32, 75, 94, 196
BssT1I	CCWWGG	1 cut(s)	353
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	2 cut(s)	209, 254
BstC8I	GCNNGC	1 cut(s)	431
BstDEI	CTNAG	5 cut(s)	49, 200, 568, 701, 765
BstEII	GGTNACC	1 cut(s)	722
BstF5I	GGATG	5 cut(s)	325, 469, 631, 676, 739
BstFNI	CGCG	1 cut(s)	429
BstKTI	GATC	4 cut(s)	35, 78, 97, 199
BstMAI	GTCTC	2 cut(s)	58, 230
BstMBI	GATC	4 cut(s)	32, 75, 94, 196
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 43, 98
BstNI	CCWGG	1 cut(s)	194
BstNSI	RCATGY	1 cut(s)	286
BstPI	GGTNACC	1 cut(s)	722
BstSCI	CCNGG	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	150
BstUI	CGCG	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	111, 410
BstX2I	RGATCY	2 cut(s)	75, 196
BstYI	RGATCY	2 cut(s)	75, 196
BsuI	GTATCC	1 cut(s)	289
BsuRI	GGCC	3 cut(s)	60, 523, 754
BtgZI	GCGATG	1 cut(s)	73
BtsCI	GGATG	5 cut(s)	325, 469, 631, 676, 739
Cac8I	GCNNGC	1 cut(s)	431
Cfr10I	RCCGGY	1 cut(s)	614
Cfr13I	GGNCC	2 cut(s)	521, 688
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	4 cut(s)	98, 283, 600, 728
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	5 cut(s)	49, 200, 568, 701, 765
DpnI	GATC	4 cut(s)	34, 77, 96, 198
DpnII	GATC	4 cut(s)	32, 75, 94, 196
Eco130I	CCWWGG	1 cut(s)	353
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	688
Eco57I	CTGAAG	2 cut(s)	95, 570
Eco91I	GGTNACC	1 cut(s)	722
EcoO109I	RGGNCCY	1 cut(s)	521
EcoO65I	GGTNACC	1 cut(s)	722
EcoRI	GAATTC	1 cut(s)	605
EcoRII	CCWGG	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	353
ErhI	CCWWGG	1 cut(s)	353
FaeI	CATG	4 cut(s)	101, 286, 603, 731
FatI	CATG	4 cut(s)	97, 282, 599, 727
FbaI	TGATCA	1 cut(s)	94
Fnu4HI	GCNGC	3 cut(s)	125, 424, 427
FokI	GGATG	5 cut(s)	332, 476, 638, 683, 746
Fsp4HI	GCNGC	3 cut(s)	125, 424, 427
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	3 cut(s)	125, 424, 427
GsaI	CCCAGC	1 cut(s)	463
HaeIII	GGCC	3 cut(s)	60, 523, 754
HapII	CCGG	2 cut(s)	57, 615
Hin1II	CATG	4 cut(s)	101, 286, 603, 731
HinfI	GANTC	1 cut(s)	146
HpaII	CCGG	2 cut(s)	57, 615
HphI	GGTGA	4 cut(s)	629, 686, 716, 753
Hpy188I	TCNGA	6 cut(s)	41, 114, 279, 571, 580, 589
Hpy188III	TCNNGA	3 cut(s)	443, 487, 533
Hpy99I	CGWCG	1 cut(s)	647
HpyAV	CCTTC	4 cut(s)	119, 165, 505, 707
HpyCH4III	ACNGT	2 cut(s)	209, 254
HpyCH4V	TGCA	3 cut(s)	20, 286, 737
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 43, 98
HpyF3I	CTNAG	5 cut(s)	49, 200, 568, 701, 765
Hsp92II	CATG	4 cut(s)	101, 286, 603, 731
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	4 cut(s)	32, 75, 94, 196
LmnI	GCTCC	1 cut(s)	42
Lsp1109I	GCAGC	2 cut(s)	111, 410
LweI	GCATC	2 cut(s)	571, 724
MaeI	CTAG	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	722
MalI	GATC	4 cut(s)	34, 77, 96, 198
MboI	GATC	4 cut(s)	32, 75, 94, 196
MboII	GAAGA	2 cut(s)	70, 572
MflI	RGATCY	2 cut(s)	75, 196
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	5 cut(s)	138, 216, 506, 605, 620
MmeI	TCCRAC	1 cut(s)	257
MseI	TTAA	1 cut(s)	468
MslI	CAYNNNNRTG	2 cut(s)	347, 732
MspI	CCGG	2 cut(s)	57, 615
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	3 cut(s)	10, 43, 98
NdeII	GATC	4 cut(s)	32, 75, 94, 196
NlaIII	CATG	4 cut(s)	101, 286, 603, 731
NlaIV	GGNNCC	2 cut(s)	106, 522
NmeAIII	GCCGAG	1 cut(s)	685
NmuCI	GTSAC	1 cut(s)	722
NspI	RCATGY	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	146
PflFI	GACNNNGTC	1 cut(s)	720
PfoI	TCCNGGA	1 cut(s)	192
PkrI	GCNGC	3 cut(s)	126, 425, 428
Psp6I	CCWGG	1 cut(s)	192
PspEI	GGTNACC	1 cut(s)	722
PspFI	CCCAGC	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	2 cut(s)	106, 522
PspPI	GGNCC	2 cut(s)	521, 688
PsuI	RGATCY	2 cut(s)	75, 196
PsyI	GACNNNGTC	1 cut(s)	720
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
RseI	CAYNNNNRTG	2 cut(s)	347, 732
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	3 cut(s)	125, 424, 427
Sau3AI	GATC	4 cut(s)	32, 75, 94, 196
Sau96I	GGNCC	2 cut(s)	521, 688
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	406
SfaNI	GCATC	2 cut(s)	571, 724
SfcI	CTRYAG	1 cut(s)	150
SinI	GGWCC	1 cut(s)	688
SmiMI	CAYNNNNRTG	2 cut(s)	347, 732
SmlI	CTYRAG	6 cut(s)	118, 359, 368, 418, 434, 473
SmoI	CTYRAG	6 cut(s)	118, 359, 368, 418, 434, 473
Sse9I	AATT	5 cut(s)	138, 216, 506, 605, 620
SsiI	CCGC	1 cut(s)	427
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	192
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	2 cut(s)	209, 254
TaqI	TCGA	1 cut(s)	6
TasI	AATT	5 cut(s)	138, 216, 506, 605, 620
TauI	GCSGC	1 cut(s)	429
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TseFI	GTSAC	1 cut(s)	722
TseI	GCWGC	2 cut(s)	124, 423
Tsp45I	GTSAC	1 cut(s)	722
TspDTI	ATGAA	1 cut(s)	726
Tth111I	GACNNNGTC	1 cut(s)	720
VpaK11BI	GGWCC	1 cut(s)	688
XapI	RAATTY	1 cut(s)	605
XceI	RCATGY	1 cut(s)	286
XmaJI	CCTAGG	1 cut(s)	353
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.