Rh2BG249900

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000713
Physical Location & Seq
Reverse (-)
25584582 .. 25587306
2725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG249900.1

Sequence Viewer

Length: 666 bp
ATGCGTGCTAGTGCCAAATCTCTTCAGACGTTGAAGCTGCCAAGAAGTGCAGTAAGTGATTTGATAGTGGAACAGGTTGCCGCGAAGCTCTCTACCATAACTTCCTTGGATTTAAGCTACTGCAAAACTATTGGAGCCCCTGCACTTGAGGCAATTGGAAAGCACTGTAAACATCTCACAAAGTTGCAGAGATGCATGTATGGATGGGAACTTGACAAGGACTCTCAAGACAAGGAGGGCTTTGCAATAGCAGCCACGATGCCAAAACTCAAGCACCTTGAGTTACGCTTTATGCGTATTAGTACAGAACCTGTGCTTCAGATACTATTGAACTGTCCTGAGCTCCATTTGTTAAACGTGCTAGGGTGCTACAGTGTAAAAATTGACGAAAAGTTTGTCAAGAAGTTCCCAGGGCTGAATGTGGTTGGACCAGGTTCAGGCAATGAGGGCTGGGATGATTGCTCCACTTTCTCAGTTTCTTCCAGCTACTTAGATTGGGACTTGATGGGCTGCGTAATCAACAATGATGACTATGAGGCAGAGTATGATTATTTTGATGAAGATGAGGCCTGGGAAGATGATCAAAGTATGGCGGATGTAGAATTTAGCTTCTATGATGGTTTTTATCTTGATAATGCTGGGTTTGATTGGCCCCCGACTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

221

Amino Acids

24.86

Weight (kDa)

4.53

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 83
AciI CCGC 2 cut(s) 81, 593
AcsI RAATTY 1 cut(s) 602
AcuI CTGAAG 2 cut(s) 8, 302
AfaI GTAC 1 cut(s) 304
AfiI CCNNNNNNNGG 1 cut(s) 437
AgsI TTSAA 2 cut(s) 34, 331
AjnI CCWGG 3 cut(s) 409, 430, 569
AluBI AGCT 6 cut(s) 37, 88, 117, 343, 486, 609
AluI AGCT 6 cut(s) 37, 88, 117, 343, 486, 609
Alw21I GWGCWC 1 cut(s) 345
AlwNI CAGNNNCTG 1 cut(s) 311
AoxI GGCC 2 cut(s) 567, 650
ApeKI GCWGC 3 cut(s) 37, 251, 510
ApoI RAATTY 1 cut(s) 602
ArsI GACNNNNNNTTYG 4 cut(s) 377, 381, 409, 413
AspS9I GGNCC 2 cut(s) 428, 651
AvaII GGWCC 1 cut(s) 428
BanII GRGCYC 2 cut(s) 139, 345
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 3 cut(s) 24, 263, 497
BccI CCATC 3 cut(s) 198, 499, 611
BciT130I CCWGG 3 cut(s) 411, 432, 571
BclI TGATCA 1 cut(s) 580
BfaI CTAG 2 cut(s) 9, 362
BfmI CTRYAG 1 cut(s) 370
BisI GCNGC 4 cut(s) 38, 81, 252, 511
BlsI GCNGC 4 cut(s) 39, 82, 253, 512
Bme1390I CCNGG 3 cut(s) 411, 432, 571
Bme18I GGWCC 1 cut(s) 428
BmgT120I GGNCC 2 cut(s) 428, 651
BmiI GGNNCC 2 cut(s) 136, 653
BmrFI CCNGG 3 cut(s) 411, 432, 571
BmsI GCATC 2 cut(s) 182, 249
Bpu10I CCTNAGC 1 cut(s) 339
BpuEI CTTGAG 4 cut(s) 167, 210, 254, 299
BsaJI CCNNGG 4 cut(s) 105, 409, 410, 570
Bsc4I CCNNNNNNNGG 1 cut(s) 437
Bse3DI GCAATG 1 cut(s) 448
BseBI CCWGG 3 cut(s) 411, 432, 571
BseDI CCNNGG 4 cut(s) 105, 409, 410, 570
BseGI GGATG 3 cut(s) 209, 460, 601
BseLI CCNNNNNNNGG 1 cut(s) 437
BseMI GCAATG 1 cut(s) 448
BseMII CTCAG 2 cut(s) 330, 486
BseXI GCAGC 3 cut(s) 24, 263, 497
BseYI CCCAGC 2 cut(s) 450, 638
BsgI GTGCAG 2 cut(s) 69, 126
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 2 cut(s) 569, 652
BsiHKAI GWGCWC 1 cut(s) 345
BslFI GGGAC 1 cut(s) 512
BslI CCNNNNNNNGG 1 cut(s) 437
BsmFI GGGAC 1 cut(s) 512
BsnI GGCC 2 cut(s) 569, 652
Bsp1286I GDGCHC 2 cut(s) 139, 345
Bsp143I GATC 1 cut(s) 580
BspACI CCGC 2 cut(s) 81, 593
BspANI GGCC 2 cut(s) 569, 652
BspCNI CTCAG 2 cut(s) 331, 485
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 2 cut(s) 136, 653
BsrDI GCAATG 1 cut(s) 448
BssECI CCNNGG 4 cut(s) 105, 409, 410, 570
BssMI GATC 1 cut(s) 580
BssT1I CCWWGG 1 cut(s) 105
Bst2UI CCWGG 3 cut(s) 411, 432, 571
Bst4CI ACNGT 3 cut(s) 167, 335, 374
Bst6I CTCTTC 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 3 cut(s) 339, 472, 490
BstF5I GGATG 3 cut(s) 209, 460, 601
BstFNI CGCG 1 cut(s) 83
BstKTI GATC 1 cut(s) 583
BstMBI GATC 1 cut(s) 580
BstMWI GCNNNNNNNGC 3 cut(s) 149, 251, 447
BstNI CCWGG 3 cut(s) 411, 432, 571
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 3 cut(s) 409, 430, 569
BstSFI CTRYAG 1 cut(s) 370
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 3 cut(s) 24, 263, 497
BsuRI GGCC 2 cut(s) 569, 652
BtsCI GGATG 3 cut(s) 209, 460, 601
BtsIMutI CAGTG 2 cut(s) 163, 379
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 311
Cfr13I GGNCC 2 cut(s) 428, 651
CsiI ACCWGGT 1 cut(s) 430
Csp6I GTAC 1 cut(s) 303
CviAII CATG 1 cut(s) 196
CviQI GTAC 1 cut(s) 303
DdeI CTNAG 3 cut(s) 339, 472, 490
DpnI GATC 1 cut(s) 582
DpnII GATC 1 cut(s) 580
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
EciI GGCGGA 1 cut(s) 608
Ecl136II GAGCTC 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 105
Eco147I AGGCCT 1 cut(s) 569
Eco24I GRGCYC 2 cut(s) 139, 345
Eco47I GGWCC 1 cut(s) 428
Eco53kI GAGCTC 1 cut(s) 343
Eco57I CTGAAG 2 cut(s) 8, 302
EcoICRI GAGCTC 1 cut(s) 343
EcoRII CCWGG 3 cut(s) 409, 430, 569
EcoT14I CCWWGG 1 cut(s) 105
EcoT22I ATGCAT 1 cut(s) 197
EcoT38I GRGCYC 2 cut(s) 139, 345
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 1 cut(s) 199
FaiI YATR 8 cut(s) 98, 197, 201, 293, 534, 546, 590, 615
FalI AAGNNNNNCTT 2 cut(s) 224, 256
FaqI GGGAC 1 cut(s) 512
FatI CATG 1 cut(s) 195
FbaI TGATCA 1 cut(s) 580
Fnu4HI GCNGC 4 cut(s) 38, 81, 252, 511
FokI GGATG 3 cut(s) 216, 467, 608
FriOI GRGCYC 2 cut(s) 139, 345
Fsp4HI GCNGC 4 cut(s) 38, 81, 252, 511
FspBI CTAG 2 cut(s) 9, 362
GluI GCNGC 4 cut(s) 38, 81, 252, 511
GsaI CCCAGC 2 cut(s) 454, 642
HaeIII GGCC 2 cut(s) 569, 652
Hin1II CATG 1 cut(s) 199
HinfI GANTC 2 cut(s) 221, 658
Hpy166II GTNNAC 1 cut(s) 170
Hpy188I TCNGA 2 cut(s) 27, 321
Hpy188III TCNNGA 4 cut(s) 227, 338, 400, 629
Hpy8I GTNNAC 1 cut(s) 170
HpyCH4III ACNGT 3 cut(s) 167, 335, 374
HpyCH4IV ACGT 2 cut(s) 29, 357
HpyCH4V TGCA 6 cut(s) 50, 123, 143, 187, 195, 245
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 251, 447
HpyF3I CTNAG 3 cut(s) 339, 472, 490
HpySE526I ACGT 2 cut(s) 29, 357
Hsp92II CATG 1 cut(s) 199
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 1 cut(s) 580
LmnI GCTCC 3 cut(s) 134, 348, 467
Lsp1109I GCAGC 3 cut(s) 24, 263, 497
LweI GCATC 2 cut(s) 182, 249
MabI ACCWGGT 1 cut(s) 430
MaeI CTAG 2 cut(s) 9, 362
MaeII ACGT 2 cut(s) 29, 357
MaeIII GTNAC 1 cut(s) 282
MalI GATC 1 cut(s) 582
MboI GATC 1 cut(s) 580
MboII GAAGA 4 cut(s) 14, 471, 572, 587
MfeI CAATTG 1 cut(s) 153
MhlI GDGCHC 2 cut(s) 139, 345
MluCI AATT 3 cut(s) 153, 381, 602
MlyI GAGTC 2 cut(s) 215, 652
MmeI TCCRAC 1 cut(s) 406
MnlI CCTC 5 cut(s) 142, 229, 439, 529, 559
Mph1103I ATGCAT 1 cut(s) 197
MseI TTAA 2 cut(s) 113, 353
MspR9I CCNGG 3 cut(s) 411, 432, 571
MunI CAATTG 1 cut(s) 153
MvaI CCWGG 3 cut(s) 411, 432, 571
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 3 cut(s) 149, 251, 447
NdeII GATC 1 cut(s) 580
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 2 cut(s) 136, 653
NsiI ATGCAT 1 cut(s) 197
NspI RCATGY 1 cut(s) 199
PasI CCCWGGG 1 cut(s) 410
PceI AGGCCT 1 cut(s) 569
PcsI WCGNNNNNNNCGW 1 cut(s) 292
PkrI GCNGC 4 cut(s) 39, 82, 253, 512
PleI GAGTC 2 cut(s) 215, 652
PpsI GAGTC 2 cut(s) 215, 652
Psp124BI GAGCTC 1 cut(s) 345
Psp6I CCWGG 3 cut(s) 409, 430, 569
PspFI CCCAGC 2 cut(s) 450, 638
PspGI CCWGG 3 cut(s) 409, 430, 569
PspN4I GGNNCC 2 cut(s) 136, 653
PspPI GGNCC 2 cut(s) 428, 651
PstNI CAGNNNCTG 1 cut(s) 311
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
SacI GAGCTC 1 cut(s) 345
SaqAI TTAA 2 cut(s) 113, 353
SatI GCNGC 4 cut(s) 38, 81, 252, 511
Sau3AI GATC 1 cut(s) 580
Sau96I GGNCC 2 cut(s) 428, 651
SchI GAGTC 2 cut(s) 215, 652
ScrFI CCNGG 3 cut(s) 411, 432, 571
SduI GDGCHC 2 cut(s) 139, 345
SexAI ACCWGGT 1 cut(s) 430
SfaNI GCATC 2 cut(s) 182, 249
SfcI CTRYAG 1 cut(s) 370
SinI GGWCC 1 cut(s) 428
SmlI CTYRAG 4 cut(s) 146, 225, 269, 278
SmoI CTYRAG 4 cut(s) 146, 225, 269, 278
Sse9I AATT 3 cut(s) 153, 381, 602
SseBI AGGCCT 1 cut(s) 569
SsiI CCGC 2 cut(s) 81, 593
SspMI CTAG 2 cut(s) 9, 362
SstI GAGCTC 1 cut(s) 345
StuI AGGCCT 1 cut(s) 569
StyD4I CCNGG 3 cut(s) 409, 430, 569
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 3 cut(s) 167, 335, 374
TaiI ACGT 2 cut(s) 32, 360
TasI AATT 3 cut(s) 153, 381, 602
TatI WGTACW 1 cut(s) 302
TauI GCSGC 1 cut(s) 83
Tru1I TTAA 2 cut(s) 113, 353
Tru9I TTAA 2 cut(s) 113, 353
TscAI CASTG 2 cut(s) 170, 379
TseI GCWGC 3 cut(s) 37, 251, 510
TspDTI ATGAA 1 cut(s) 573
TspRI CASTG 2 cut(s) 170, 379
VpaK11BI GGWCC 1 cut(s) 428
XapI RAATTY 1 cut(s) 602
XceI RCATGY 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XspI CTAG 2 cut(s) 9, 362
Zsp2I ATGCAT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.