Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000713

Physical Location & Seq

Genomic Coordinates Reverse (-)

27001418 .. 27003402

Gene Structure 1985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g36840.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGAAATGGCAAGTGATGTTCGGCGTTGGGATGAGTTAATACCTGAGGCGTTGAGTCTAATATTCAACGGCCTTTCTTTTAAGGAGAAGCTGACTGTGATTCCGATGGTTTGCAAACCATGGAGTAAGGTGGTTATGGGGTCTGACTGCTGGCGAGAGATAGACATTGAGGAATGGAGTAATGGATGCCAGTCGCAACACCTTGATCGAATGATTCAAATGCTGGTTGCAAGAAGTGGTGGATCGATGAGAAAGCTGTGTGTTCCTGAACTCCAAAACGACATGATTTTCTCCTTCATTGCCGAACATGCCAATGCCCTTCAGACCTTGAGACTGCGGAGAAGTGAAATAAGTGATTCAGTAGTAGAACAGACAATTGGAAGGTTTTCTAATATCACCTTCTTGGATCTTAGCTACTGTGGTAAAATTGGCAGTCGATCTCTAAAGGCCATCGGAATGAACTGTAAATTGCTCACAGGACTGTGCCGGAACATACATCCATCCTACTCTGCAGGCATCCTTATGAATGATGAGGCTGATGCCATTGCCACCACAATGCCTAGACTGAAGCACCTTGAGATAGCATACCATATCATCAACACACAAGGGGCTCTTCAAATACTTGAGAGTTGCCCCGAGCTTGAATTCATGGACTTGAGAGGGTGTTGGGATGTTAAGCTTGATGACAAGTTCTTTGGGGAGAAGTTCCCAAAATTGAATGTTTTAGGGCCTTCTGTGGACGACTGCTATGATGAGGACCTGGAAGGTTGCCTGTGTAACTCGGATGCTTCTGATGAATGTTCCCCCTTCGAATATGAAGACCTCTCTGAGGAACATCTCTCAGACGAATATCTGTCTGACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

F-box F-box-like LRR_6 Laminin_G_3

Protein Analysis

289

Amino Acids

32.68

Weight (kDa)

4.65

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08980 AT4G08980 AT4G08980 AT4G08980 AT4G08980
fragaria_vesca	FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36840 FvH4_5g36840 FvH4_5g36840
malus_domestica	MD01G1033400.v1.1 MD08G1186500.v1.1 MD15G1372500.v1.1
prunus_persica	Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1
pyrus_communis	pycom01g06090 pycom08g16030 pycom15g33350
rosa_chinensis	RchiOBHm_Chr2g0112771 RchiOBHm_Chr7g0243381 RchiOBHm_Chr7g0243391
rosa_laevigata	RLG00000000850 RLG00000000851 RLG00000018008
rosa_multiflora	Rmu_co8087500.1_g000001 Rmu_sc0001036.1_g000019 Rmu_sc0001036.1_g000027 Rmu_sc0001708.1_g000033 Rmu_sc0004612.1_g000003 Rmu_sc0024527.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131160 Rroxscaffold_3G00222130 Rroxscaffold_3G00222140
rosa_rugosa	Rorug02G0182300 Rorug02G0182400 Rorug02G0182500 Rorug02G0182600 Rorug07G0318700 Rorug07G0318800 Rorug07G0318900 Rorug07G0319000 Rorug07G0319000
rosa_samantha	Rh2AG237000 Rh2BG249900 Rh2CG241000 Rh2DG244500 Rh7AG475000 Rh7AG475100 Rh7BG444900 Rh7BG445000 Rh7CG491200 Rh7CG491300 Rh7DG459500 Rh7DG459600
rosa_wichuraiana	Rw2G018330 Rw7G039500 Rw7G039520 Rw7G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	337
AclWI	GGATC	2 cut(s)	250, 414
AcsI	RAATTY	1 cut(s)	644
AcuI	CTGAAG	2 cut(s)	305, 587
AfiI	CCNNNNNNNGG	1 cut(s)	829
AgsI	TTSAA	5 cut(s)	67, 218, 617, 644, 718
AjnI	CCWGG	1 cut(s)	759
AjuI	GAANNNNNNNTTGG	2 cut(s)	360, 392
AluBI	AGCT	5 cut(s)	91, 256, 414, 640, 679
AluI	AGCT	5 cut(s)	91, 256, 414, 640, 679
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	2 cut(s)	250, 414
Ama87I	CYCGRG	1 cut(s)	635
AoxI	GGCC	3 cut(s)	70, 447, 728
ApoI	RAATTY	1 cut(s)	644
ArsI	GACNNNNNNTTYG	2 cut(s)	677, 709
Asp700I	GAANNNNTTC	1 cut(s)	385
AspS9I	GGNCC	2 cut(s)	728, 757
AsuHPI	GGTGA	1 cut(s)	388
AsuII	TTCGAA	1 cut(s)	810
AvaI	CYCGRG	1 cut(s)	635
AvaII	GGWCC	1 cut(s)	757
AxyI	CCTNAGG	1 cut(s)	45
BanII	GRGCYC	1 cut(s)	613
BbsI	GAAGAC	1 cut(s)	825
BccI	CCATC	3 cut(s)	100, 458, 508
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	761
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	1 cut(s)	561
BfmI	CTRYAG	1 cut(s)	510
Bme1390I	CCNGG	1 cut(s)	761
Bme18I	GGWCC	1 cut(s)	757
BmeT110I	CYCGRG	1 cut(s)	635
BmgT120I	GGNCC	2 cut(s)	728, 757
BmrFI	CCNGG	1 cut(s)	761
BmsI	GCATC	4 cut(s)	176, 525, 529, 775
BpiI	GAAGAC	1 cut(s)	825
Bpu14I	TTCGAA	1 cut(s)	810
BpuEI	CTTGAG	4 cut(s)	349, 596, 644, 676
Bsa29I	ATCGAT	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	1 cut(s)	829
Bse1I	ACTGG	1 cut(s)	190
Bse21I	CCTNAGG	1 cut(s)	45
Bse3DI	GCAATG	2 cut(s)	297, 543
BseBI	CCWGG	1 cut(s)	761
BseCI	ATCGAT	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	119
BseGI	GGATG	7 cut(s)	37, 191, 496, 500, 516, 676, 790
BseLI	CCNNNNNNNGG	1 cut(s)	829
BseMI	GCAATG	2 cut(s)	297, 543
BseMII	CTCAG	3 cut(s)	36, 819, 855
BseNI	ACTGG	1 cut(s)	190
BshFI	GGCC	3 cut(s)	72, 449, 730
BshVI	ATCGAT	1 cut(s)	245
BsiHKCI	CYCGRG	1 cut(s)	635
BsiSI	CCGG	1 cut(s)	487
BslI	CCNNNNNNNGG	1 cut(s)	829
BsmAI	GTCTC	1 cut(s)	325
BsnI	GGCC	3 cut(s)	72, 449, 730
BsoBI	CYCGRG	1 cut(s)	635
Bsp119I	TTCGAA	1 cut(s)	810
Bsp1286I	GDGCHC	1 cut(s)	613
Bsp143I	GATC	4 cut(s)	205, 242, 406, 437
Bsp19I	CCATGG	1 cut(s)	119
BspACI	CCGC	1 cut(s)	337
BspANI	GGCC	3 cut(s)	72, 449, 730
BspCNI	CTCAG	3 cut(s)	37, 820, 854
BspDI	ATCGAT	1 cut(s)	245
BspMAI	CTGCAG	1 cut(s)	514
BspPI	GGATC	2 cut(s)	250, 414
BspQI	GCTCTTC	1 cut(s)	618
BspT104I	TTCGAA	1 cut(s)	810
BsrDI	GCAATG	2 cut(s)	297, 543
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	119
BssMI	GATC	4 cut(s)	205, 242, 406, 437
BssT1I	CCWWGG	1 cut(s)	119
Bst2UI	CCWGG	1 cut(s)	761
Bst4CI	ACNGT	4 cut(s)	97, 419, 464, 483
Bst6I	CTCTTC	1 cut(s)	618
BstBI	TTCGAA	1 cut(s)	810
BstC8I	GCNNGC	2 cut(s)	152, 514
BstDEI	CTNAG	4 cut(s)	45, 410, 828, 841
BstDSI	CCRYGG	1 cut(s)	119
BstENI	CCTNNNNNAGG	1 cut(s)	827
BstF5I	GGATG	7 cut(s)	37, 191, 496, 500, 516, 676, 790
BstKTI	GATC	4 cut(s)	208, 245, 409, 440
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	4 cut(s)	205, 242, 406, 437
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	1 cut(s)	761
BstNSI	RCATGY	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	759
BstSFI	CTRYAG	1 cut(s)	510
BstV2I	GAAGAC	1 cut(s)	825
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
Bsu15I	ATCGAT	1 cut(s)	245
Bsu36I	CCTNAGG	1 cut(s)	45
BsuRI	GGCC	3 cut(s)	72, 449, 730
BsuTUI	ATCGAT	1 cut(s)	245
BtgI	CCRYGG	1 cut(s)	119
BtsCI	GGATG	7 cut(s)	37, 191, 496, 500, 516, 676, 790
Cac8I	GCNNGC	2 cut(s)	152, 514
Cfr13I	GGNCC	2 cut(s)	728, 757
ClaI	ATCGAT	1 cut(s)	245
CviAII	CATG	4 cut(s)	120, 283, 308, 649
DdeI	CTNAG	4 cut(s)	45, 410, 828, 841
DpnI	GATC	4 cut(s)	207, 244, 408, 439
DpnII	GATC	4 cut(s)	205, 242, 406, 437
Eam1104I	CTCTTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	618
Eco130I	CCWWGG	1 cut(s)	119
Eco24I	GRGCYC	1 cut(s)	613
Eco47I	GGWCC	1 cut(s)	757
Eco57I	CTGAAG	2 cut(s)	305, 587
Eco81I	CCTNAGG	1 cut(s)	45
Eco88I	CYCGRG	1 cut(s)	635
EcoNI	CCTNNNNNAGG	1 cut(s)	827
EcoO109I	RGGNCCY	2 cut(s)	728, 757
EcoRI	GAATTC	1 cut(s)	644
EcoRII	CCWGG	1 cut(s)	759
EcoT14I	CCWWGG	1 cut(s)	119
EcoT38I	GRGCYC	1 cut(s)	613
ErhI	CCWWGG	1 cut(s)	119
FaeI	CATG	4 cut(s)	123, 286, 311, 652
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FatI	CATG	4 cut(s)	119, 282, 307, 648
FokI	GGATG	7 cut(s)	44, 198, 483, 487, 503, 683, 797
FriOI	GRGCYC	1 cut(s)	613
FspBI	CTAG	1 cut(s)	561
HaeIII	GGCC	3 cut(s)	72, 449, 730
HapII	CCGG	1 cut(s)	487
Hin1II	CATG	4 cut(s)	123, 286, 311, 652
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	4 cut(s)	55, 100, 214, 356
HpaII	CCGG	1 cut(s)	487
HphI	GGTGA	1 cut(s)	388
Hpy166II	GTNNAC	1 cut(s)	739
Hpy188I	TCNGA	9 cut(s)	105, 145, 324, 455, 784, 793, 829, 844, 859
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	1 cut(s)	739
HpyAV	CCTTC	7 cut(s)	304, 329, 375, 409, 741, 758, 817
HpyCH4III	ACNGT	4 cut(s)	97, 419, 464, 483
HpyCH4V	TGCA	3 cut(s)	114, 230, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	4 cut(s)	45, 410, 828, 841
Hsp92II	CATG	4 cut(s)	123, 286, 311, 652
Kzo9I	GATC	4 cut(s)	205, 242, 406, 437
LguI	GCTCTTC	1 cut(s)	618
LweI	GCATC	4 cut(s)	176, 525, 529, 775
MaeI	CTAG	1 cut(s)	561
MaeIII	GTNAC	1 cut(s)	776
MalI	GATC	4 cut(s)	207, 244, 408, 439
MboI	GATC	4 cut(s)	205, 242, 406, 437
MboII	GAAGA	2 cut(s)	605, 830
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	1 cut(s)	613
MluCI	AATT	5 cut(s)	375, 426, 467, 644, 713
MlyI	GAGTC	1 cut(s)	64
MnlI	CCTC	7 cut(s)	40, 163, 526, 653, 748, 823, 833
MroXI	GAANNNNTTC	1 cut(s)	385
MseI	TTAA	3 cut(s)	38, 81, 675
MslI	CAYNNNNRTG	4 cut(s)	312, 455, 521, 554
MspI	CCGG	1 cut(s)	487
MspR9I	CCNGG	1 cut(s)	761
MunI	CAATTG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	761
MwoI	GCNNNNNNNGC	1 cut(s)	308
NcoI	CCATGG	1 cut(s)	119
NdeII	GATC	4 cut(s)	205, 242, 406, 437
NlaIII	CATG	4 cut(s)	123, 286, 311, 652
NspI	RCATGY	1 cut(s)	311
NspV	TTCGAA	1 cut(s)	810
PciSI	GCTCTTC	1 cut(s)	618
PdmI	GAANNNNTTC	1 cut(s)	385
PfeI	GAWTC	3 cut(s)	100, 214, 356
PleI	GAGTC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	63
PpuMI	RGGWCCY	1 cut(s)	757
Psp5II	RGGWCCY	1 cut(s)	757
Psp6I	CCWGG	1 cut(s)	759
PspGI	CCWGG	1 cut(s)	759
PspPI	GGNCC	2 cut(s)	728, 757
PspPPI	RGGWCCY	1 cut(s)	757
PstI	CTGCAG	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	406
RseI	CAYNNNNRTG	4 cut(s)	312, 455, 521, 554
SapI	GCTCTTC	1 cut(s)	618
SaqAI	TTAA	3 cut(s)	38, 81, 675
Sau3AI	GATC	4 cut(s)	205, 242, 406, 437
Sau96I	GGNCC	2 cut(s)	728, 757
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	761
SduI	GDGCHC	1 cut(s)	613
SfaNI	GCATC	4 cut(s)	176, 525, 529, 775
SfcI	CTRYAG	1 cut(s)	510
SfuI	TTCGAA	1 cut(s)	810
SinI	GGWCC	1 cut(s)	757
SmiMI	CAYNNNNRTG	4 cut(s)	312, 455, 521, 554
SmlI	CTYRAG	4 cut(s)	328, 575, 623, 655
SmoI	CTYRAG	4 cut(s)	328, 575, 623, 655
Sse9I	AATT	5 cut(s)	375, 426, 467, 644, 713
SsiI	CCGC	1 cut(s)	337
SspI	AATATT	1 cut(s)	63
SspMI	CTAG	1 cut(s)	561
StyD4I	CCNGG	1 cut(s)	759
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	4 cut(s)	97, 419, 464, 483
TaqI	TCGA	4 cut(s)	208, 245, 436, 810
TasI	AATT	5 cut(s)	375, 426, 467, 644, 713
TfiI	GAWTC	3 cut(s)	100, 214, 356
Tru1I	TTAA	3 cut(s)	38, 81, 675
Tru9I	TTAA	3 cut(s)	38, 81, 675
TspDTI	ATGAA	6 cut(s)	286, 473, 539, 637, 810, 831
VpaK11BI	GGWCC	1 cut(s)	757
XagI	CCTNNNNNAGG	1 cut(s)	827
XapI	RAATTY	1 cut(s)	644
XceI	RCATGY	1 cut(s)	311
XmnI	GAANNNNTTC	1 cut(s)	385
XspI	CTAG	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.