FvH4_1g20520

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000713
Physical Location & Seq
Reverse (-)
12704593 .. 12707603
3011 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g20520.t6

Sequence Viewer

Length: 957 bp
ATGGAGGTGGACTATGAGTTTAGGAATTGGGAGGAGCTTATACCTGATGCACTTGGCCTTATATTTAAGAATCTAACACTGGATGAGACCCTCACTGTGATCCCAAGAGTCTGCAAGTTTTGGGGAAGAGTAGTTGCAGGGCCTTATTGCTGGCAGGAGATCAACATTGTAGAATGGAGCAAGTGTCAGTCGCCTCAGACTATAGACCGAATGCTTAGGATGTTGGTCACCAGGAGCTCAGGTTTGCCCCGCAAGCTTTGTGTTTCTGGGGCTCTCAATGATCAGAGTTTTTCATTTATCGCGGACCATGCCAAATCTCTTCGGACGCTGAAGCTGCCAAGAATTGCAGTAAGTGATTTGATAGTGGAACAGGTTGCTGCAAAGCTCTCTACCATAACTTCCTTGGATTTGAGCTACTGCAAAACTGTTGGGGCCCCTGCACTTGAGGCGATTGGAAAGCACTGTAAACATCTCACAAAGTTACGGAGATGTATGTATGGATGGGAACTTGACAAGGACCCTCAAGACAAGGAGGGTTTTGCAATAGCAGCCACAATGCCAAAACTCAAGCATCTTGAGCTACGCTTTATGCGTATTAGTACAGAACCTGTGCTTCAGATACTATTGAGCTGCCCTGAGCTCCATTTGCTAAATGTGGTAGGGTGCTACAGTGTAAAAATTGACGAAAAGTTTGTCAAGAACTTCTCAGGGCTGAATGTGGTTGGACCTGAAGGTTCAGGCTGGGATGATTGCTCTACTTTCTCGGTCTCTTCCAGCTACTTGGATTGGGACTTGATGGGCGTAATCCACAATGAGGTAGAGTATGATGATTTTGAGGAAGATATGTTAGATGAGGCCTGGGAAGACGGTTTAGGTATGGAGGATGGAGAAGCTTTTGGCTTCTATGATAGTTTTTGTCGTGATAATGCTGGGTTTGATTGGCCCCCATCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

319

Amino Acids

36.01

Weight (kDa)

4.79

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 302
AciI CCGC 2 cut(s) 250, 302
AclWI GGATC 1 cut(s) 94
AcuI CTGAAG 3 cut(s) 350, 599, 750
AfaI GTAC 1 cut(s) 601
AfiI CCNNNNNNNGG 1 cut(s) 814
AjnI CCWGG 2 cut(s) 230, 857
Alw21I GWGCWC 2 cut(s) 239, 642
Alw26I GTCTC 2 cut(s) 80, 772
AlwI GGATC 1 cut(s) 94
AlwNI CAGNNNCTG 1 cut(s) 608
AoxI GGCC 5 cut(s) 55, 140, 432, 855, 941
ApaI GGGCCC 1 cut(s) 436
ApeKI GCWGC 4 cut(s) 334, 377, 548, 630
ArsI GACNNNNNNTTYG 4 cut(s) 674, 678, 706, 710
AspS9I GGNCC 7 cut(s) 140, 304, 432, 433, 517, 725, 942
AsuHPI GGTGA 1 cut(s) 220
AvaII GGWCC 3 cut(s) 304, 517, 725
BaeGI GKGCMC 1 cut(s) 436
BanII GRGCYC 4 cut(s) 239, 274, 436, 642
BbsI GAAGAC 1 cut(s) 870
Bbv12I GWGCWC 2 cut(s) 239, 642
BbvI GCAGC 4 cut(s) 321, 364, 560, 617
BccI CCATC 4 cut(s) 495, 790, 878, 955
BciT130I CCWGG 2 cut(s) 232, 859
BclI TGATCA 1 cut(s) 280
BcoDI GTCTC 2 cut(s) 80, 772
BfmI CTRYAG 2 cut(s) 201, 667
BisI GCNGC 4 cut(s) 335, 378, 549, 631
BlsI GCNGC 4 cut(s) 336, 379, 550, 632
Bme1390I CCNGG 2 cut(s) 232, 859
Bme18I GGWCC 3 cut(s) 304, 517, 725
BmgT120I GGNCC 7 cut(s) 140, 304, 432, 433, 517, 725, 942
BmiI GGNNCC 5 cut(s) 433, 434, 435, 519, 944
BmrFI CCNGG 2 cut(s) 232, 859
BmsI GCATC 2 cut(s) 37, 580
BpiI GAAGAC 1 cut(s) 870
Bpu10I CCTNAGC 3 cut(s) 215, 238, 636
BpuEI CTTGAG 4 cut(s) 464, 507, 551, 596
BsaI GGTCTC 2 cut(s) 80, 772
BsaJI CCNNGG 2 cut(s) 402, 858
BsaXI ACNNNNNCTCC 4 cut(s) 169, 199, 226, 256
Bsc4I CCNNNNNNNGG 1 cut(s) 814
Bse1I ACTGG 1 cut(s) 84
BseBI CCWGG 2 cut(s) 232, 859
BseDI CCNNGG 2 cut(s) 402, 858
BseGI GGATG 5 cut(s) 88, 225, 506, 751, 889
BseLI CCNNNNNNNGG 1 cut(s) 814
BseMII CTCAG 4 cut(s) 209, 252, 627, 720
BseNI ACTGG 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 47
BseSI GKGCMC 1 cut(s) 436
BseXI GCAGC 4 cut(s) 321, 364, 560, 617
BseYI CCCAGC 2 cut(s) 741, 929
BsgI GTGCAG 1 cut(s) 423
Bsh1236I CGCG 1 cut(s) 302
BshFI GGCC 5 cut(s) 57, 142, 434, 857, 943
BsiHKAI GWGCWC 2 cut(s) 239, 642
BslFI GGGAC 1 cut(s) 803
BslI CCNNNNNNNGG 1 cut(s) 814
BsmAI GTCTC 2 cut(s) 80, 772
BsmFI GGGAC 1 cut(s) 803
BsmI GAATGC 1 cut(s) 216
BsnI GGCC 5 cut(s) 57, 142, 434, 857, 943
Bso31I GGTCTC 2 cut(s) 80, 772
Bsp120I GGGCCC 1 cut(s) 432
Bsp1286I GDGCHC 4 cut(s) 239, 274, 436, 642
Bsp143I GATC 3 cut(s) 99, 159, 280
BspACI CCGC 2 cut(s) 250, 302
BspANI GGCC 5 cut(s) 57, 142, 434, 857, 943
BspCNI CTCAG 4 cut(s) 208, 251, 628, 719
BspFNI CGCG 1 cut(s) 302
BspLI GGNNCC 5 cut(s) 433, 434, 435, 519, 944
BspPI GGATC 1 cut(s) 94
BspTNI GGTCTC 2 cut(s) 80, 772
BsrI ACTGG 1 cut(s) 84
BssECI CCNNGG 2 cut(s) 402, 858
BssMI GATC 3 cut(s) 99, 159, 280
BssT1I CCWWGG 1 cut(s) 402
Bst2UI CCWGG 2 cut(s) 232, 859
Bst4CI ACNGT 5 cut(s) 97, 427, 464, 671, 869
Bst6I CTCTTC 3 cut(s) 121, 324, 775
BstC8I GCNNGC 2 cut(s) 152, 254
BstDEI CTNAG 5 cut(s) 195, 215, 238, 636, 706
BstEII GGTNACC 1 cut(s) 226
BstF5I GGATG 5 cut(s) 88, 225, 506, 751, 889
BstFNI CGCG 1 cut(s) 302
BstKTI GATC 3 cut(s) 102, 162, 283
BstMAI GTCTC 2 cut(s) 80, 772
BstMBI GATC 3 cut(s) 99, 159, 280
BstMWI GCNNNNNNNGC 7 cut(s) 253, 308, 334, 446, 548, 577, 646
BstNI CCWGG 2 cut(s) 232, 859
BstPI GGTNACC 1 cut(s) 226
BstSCI CCNGG 2 cut(s) 230, 857
BstSFI CTRYAG 2 cut(s) 201, 667
BstSLI GKGCMC 1 cut(s) 436
BstUI CGCG 1 cut(s) 302
BstV1I GCAGC 4 cut(s) 321, 364, 560, 617
BstV2I GAAGAC 1 cut(s) 870
BstXI CCANNNNNNTGG 1 cut(s) 781
BsuRI GGCC 5 cut(s) 57, 142, 434, 857, 943
BtsCI GGATG 5 cut(s) 88, 225, 506, 751, 889
BtsIMutI CAGTG 4 cut(s) 77, 93, 460, 676
Cac8I GCNNGC 2 cut(s) 152, 254
CaiI CAGNNNCTG 1 cut(s) 608
Cfr13I GGNCC 7 cut(s) 140, 304, 432, 433, 517, 725, 942
CseI GACGC 1 cut(s) 334
Csp6I GTAC 1 cut(s) 600
CviAII CATG 1 cut(s) 308
CviQI GTAC 1 cut(s) 600
DdeI CTNAG 5 cut(s) 195, 215, 238, 636, 706
DpnI GATC 3 cut(s) 101, 161, 282
DpnII GATC 3 cut(s) 99, 159, 280
Eam1104I CTCTTC 3 cut(s) 121, 324, 775
EarI CTCTTC 3 cut(s) 121, 324, 775
Ecl136II GAGCTC 2 cut(s) 237, 640
Eco130I CCWWGG 1 cut(s) 402
Eco147I AGGCCT 1 cut(s) 857
Eco24I GRGCYC 4 cut(s) 239, 274, 436, 642
Eco31I GGTCTC 2 cut(s) 80, 772
Eco47I GGWCC 3 cut(s) 304, 517, 725
Eco53kI GAGCTC 2 cut(s) 237, 640
Eco57I CTGAAG 3 cut(s) 350, 599, 750
Eco91I GGTNACC 1 cut(s) 226
EcoICRI GAGCTC 2 cut(s) 237, 640
EcoO109I RGGNCCY 4 cut(s) 140, 432, 433, 517
EcoO65I GGTNACC 1 cut(s) 226
EcoRII CCWGG 2 cut(s) 230, 857
EcoT14I CCWWGG 1 cut(s) 402
EcoT38I GRGCYC 4 cut(s) 239, 274, 436, 642
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 1 cut(s) 311
FaqI GGGAC 1 cut(s) 803
FatI CATG 1 cut(s) 307
FauI CCCGC 1 cut(s) 257
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 4 cut(s) 335, 378, 549, 631
FokI GGATG 5 cut(s) 95, 232, 513, 758, 896
FriOI GRGCYC 4 cut(s) 239, 274, 436, 642
Fsp4HI GCNGC 4 cut(s) 335, 378, 549, 631
GluI GCNGC 4 cut(s) 335, 378, 549, 631
GsaI CCCAGC 2 cut(s) 745, 933
HaeIII GGCC 5 cut(s) 57, 142, 434, 857, 943
HgaI GACGC 1 cut(s) 334
Hin1II CATG 1 cut(s) 311
HindIII AAGCTT 2 cut(s) 254, 891
HinfI GANTC 2 cut(s) 70, 108
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 2 cut(s) 10, 467
Hpy188I TCNGA 4 cut(s) 198, 285, 324, 618
Hpy188III TCNNGA 4 cut(s) 524, 575, 697, 920
Hpy8I GTNNAC 2 cut(s) 10, 467
HpyAV CCTTC 1 cut(s) 725
HpyCH4III ACNGT 5 cut(s) 97, 427, 464, 671, 869
HpyCH4V TGCA 8 cut(s) 50, 114, 137, 347, 380, 420, 440, 542
HpyF10VI GCNNNNNNNGC 7 cut(s) 253, 308, 334, 446, 548, 577, 646
HpyF3I CTNAG 5 cut(s) 195, 215, 238, 636, 706
Hsp92II CATG 1 cut(s) 311
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 3 cut(s) 99, 159, 280
LmnI GCTCC 4 cut(s) 34, 177, 234, 645
Lsp1109I GCAGC 4 cut(s) 321, 364, 560, 617
LweI GCATC 2 cut(s) 37, 580
MaeIII GTNAC 2 cut(s) 226, 480
MalI GATC 3 cut(s) 101, 161, 282
MboI GATC 3 cut(s) 99, 159, 280
MboII GAAGA 5 cut(s) 138, 311, 762, 851, 875
MhlI GDGCHC 4 cut(s) 239, 274, 436, 642
MluCI AATT 3 cut(s) 25, 342, 678
MlyI GAGTC 1 cut(s) 117
MmeI TCCRAC 1 cut(s) 703
MseI TTAA 1 cut(s) 66
MspR9I CCNGG 2 cut(s) 232, 859
Mva1269I GAATGC 1 cut(s) 216
MvaI CCWGG 2 cut(s) 232, 859
MvnI CGCG 1 cut(s) 302
MwoI GCNNNNNNNGC 7 cut(s) 253, 308, 334, 446, 548, 577, 646
NdeII GATC 3 cut(s) 99, 159, 280
NlaIII CATG 1 cut(s) 311
NlaIV GGNNCC 5 cut(s) 433, 434, 435, 519, 944
NmuCI GTSAC 1 cut(s) 226
PceI AGGCCT 1 cut(s) 857
PcsI WCGNNNNNNNCGW 1 cut(s) 589
PctI GAATGC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 70
PkrI GCNGC 4 cut(s) 336, 379, 550, 632
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PpuMI RGGWCCY 1 cut(s) 517
Psp124BI GAGCTC 2 cut(s) 239, 642
Psp5II RGGWCCY 1 cut(s) 517
Psp6I CCWGG 2 cut(s) 230, 857
PspEI GGTNACC 1 cut(s) 226
PspFI CCCAGC 2 cut(s) 741, 929
PspGI CCWGG 2 cut(s) 230, 857
PspN4I GGNNCC 5 cut(s) 433, 434, 435, 519, 944
PspOMI GGGCCC 1 cut(s) 432
PspPI GGNCC 7 cut(s) 140, 304, 432, 433, 517, 725, 942
PspPPI RGGWCCY 1 cut(s) 517
PstNI CAGNNNCTG 1 cut(s) 608
RsaI GTAC 1 cut(s) 601
RsaNI GTAC 1 cut(s) 600
SacI GAGCTC 2 cut(s) 239, 642
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 4 cut(s) 335, 378, 549, 631
Sau3AI GATC 3 cut(s) 99, 159, 280
Sau96I GGNCC 7 cut(s) 140, 304, 432, 433, 517, 725, 942
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 2 cut(s) 232, 859
SduI GDGCHC 4 cut(s) 239, 274, 436, 642
SfaNI GCATC 2 cut(s) 37, 580
SfcI CTRYAG 2 cut(s) 201, 667
SinI GGWCC 3 cut(s) 304, 517, 725
SmlI CTYRAG 4 cut(s) 443, 522, 566, 575
SmoI CTYRAG 4 cut(s) 443, 522, 566, 575
Sse9I AATT 3 cut(s) 25, 342, 678
SseBI AGGCCT 1 cut(s) 857
SsiI CCGC 2 cut(s) 250, 302
SstI GAGCTC 2 cut(s) 239, 642
StuI AGGCCT 1 cut(s) 857
StyD4I CCNGG 2 cut(s) 230, 857
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 5 cut(s) 97, 427, 464, 671, 869
TaqII GACCGA 2 cut(s) 222, 754
TasI AATT 3 cut(s) 25, 342, 678
TatI WGTACW 1 cut(s) 599
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 4 cut(s) 84, 100, 467, 676
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 4 cut(s) 334, 377, 548, 630
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 282
TspGWI ACGGA 1 cut(s) 499
TspRI CASTG 4 cut(s) 84, 100, 467, 676
VpaK11BI GGWCC 3 cut(s) 304, 517, 725
XcmI CCANNNNNNNNNTGG 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.