Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000713

Physical Location & Seq

Genomic Coordinates Reverse (-)

32649433 .. 32654788

Gene Structure 5356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0318900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAACGTGGTAGCAAGCAAAGGAGCCGCCAATGGCAGTCGGACCGTTTTGATAACGGGGGTGAGCAAAGGCCTAGGCCGAGCCCTCGCCGTTGAGATGGCCAAGAGAGGCCACACCGTAATCGGCTGCTCCCGTTCTCAGGATAAGCTCACCTCCCTCCAATCCGAACTCTCCGACAAGCACCTCTTCCTCAGCGCCGACGTCAGCTCGAATAGCAGCGTCCAAGAGCTGGCTCGGGTTGTGATGGAGAAGAAGGGAGTCCCGGATATCATAGTAAACAATGCCGGAGTCATCAACAACAACAACAAGCTCTGGGAGGTTCCGGCCGAGGAGTTCGACAGCGTCGTCGACACCAATGTCAAGGGGGTCGCCAACGTCTTGCGCCACTTCATTCCTCTGATGCTCAAGAGGGATCCCGGTCCGGCCACCGGAATCATAGTCAACATGTCTTCCGGCTGGGGCAGATCCGGTGCCGCACACGTGGCGCCTTACTGTGCCTCCAAATGGGCCGTGGAGGGTTTGACCCGGTCGGTGGCCAAGGAGTTGCCGAAGGACATGGCCACTGTGGCTCTCAATCCCGGGGTTATACACACTGATATGCTTGTTTCCTGCTTTGGGCCGCAGAATATGGATAGTTACCCGGAGCCTCGGGTTTGGGCCGTCAAGGCTGCTACGATGATATTGCATCTTACACCAGCTGACAATGGTGCTTCTCTCACTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

F-box F-box-like LRR_6 Laminin_G_3

Protein Analysis

241

Amino Acids

25.55

Weight (kDa)

8.78

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	15 - 202	4.5e-46	short chain dehydrogenase
KR	PF08659	15 - 180	3.7e-10	KR domain
adh_short_C2	PF13561	20 - 206	2.8e-34	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08980 AT4G08980 AT4G08980 AT4G08980 AT4G08980
fragaria_vesca	FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36840 FvH4_5g36840 FvH4_5g36840
malus_domestica	MD01G1033400.v1.1 MD08G1186500.v1.1 MD15G1372500.v1.1
prunus_persica	Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1
pyrus_communis	pycom01g06090 pycom08g16030 pycom15g33350
rosa_chinensis	RchiOBHm_Chr2g0112771 RchiOBHm_Chr7g0243381 RchiOBHm_Chr7g0243391
rosa_laevigata	RLG00000000850 RLG00000000851 RLG00000018008
rosa_multiflora	Rmu_co8087500.1_g000001 Rmu_sc0001036.1_g000019 Rmu_sc0001036.1_g000027 Rmu_sc0001708.1_g000033 Rmu_sc0004612.1_g000003 Rmu_sc0024527.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131160 Rroxscaffold_3G00222130 Rroxscaffold_3G00222140
rosa_rugosa	Rorug02G0182300 Rorug02G0182400 Rorug02G0182500 Rorug02G0182600 Rorug07G0318700 Rorug07G0318800 Rorug07G0318900 Rorug07G0319000 Rorug07G0319000
rosa_samantha	Rh2AG237000 Rh2BG249900 Rh2CG241000 Rh2DG244500 Rh7AG475000 Rh7AG475100 Rh7BG444900 Rh7BG445000 Rh7CG491200 Rh7CG491300 Rh7DG459500 Rh7DG459600
rosa_wichuraiana	Rw2G018330 Rw7G039500 Rw7G039520 Rw7G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	344, 356
AatII	GACGTC	1 cut(s)	204
AccB1I	GGYRCC	2 cut(s)	470, 484
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	348
AciI	CCGC	3 cut(s)	27, 474, 620
AclWI	GGATC	3 cut(s)	407, 420, 459
AcoI	YGGCCR	5 cut(s)	99, 324, 423, 534, 558
AcvI	CACGTG	1 cut(s)	481
AcyI	GRCGYC	2 cut(s)	201, 485
AfiI	CCNNNNNNNGG	6 cut(s)	139, 229, 428, 504, 532, 615
AflIII	ACRYGT	2 cut(s)	444, 478
AluBI	AGCT	5 cut(s)	148, 207, 229, 310, 698
AluI	AGCT	5 cut(s)	148, 207, 229, 310, 698
AlwI	GGATC	3 cut(s)	407, 420, 459
Ama87I	CYCGRG	3 cut(s)	234, 578, 648
ApeKI	GCWGC	3 cut(s)	126, 216, 668
AspA2I	CCTAGG	1 cut(s)	73
AspLEI	GCGC	3 cut(s)	197, 384, 487
AspS9I	GGNCC	5 cut(s)	42, 419, 507, 617, 657
AsuC2I	CCSGG	6 cut(s)	263, 417, 526, 579, 580, 641
AsuHPI	GGTGA	2 cut(s)	73, 142
AvaI	CYCGRG	3 cut(s)	234, 578, 648
AvaII	GGWCC	2 cut(s)	42, 419
AvrII	CCTAGG	1 cut(s)	73
BalI	TGGCCA	3 cut(s)	101, 536, 560
BamHI	GGATCC	1 cut(s)	412
BanI	GGYRCC	2 cut(s)	470, 484
BanII	GRGCYC	1 cut(s)	85
BbrPI	CACGTG	1 cut(s)	481
BbsI	GAAGAC	1 cut(s)	441
BbvCI	CCTCAGC	1 cut(s)	191
BbvI	GCAGC	3 cut(s)	113, 228, 655
BccI	CCATC	2 cut(s)	91, 238
BceAI	ACGGC	3 cut(s)	74, 494, 644
BcgI	CGANNNNNNTGC	2 cut(s)	664, 698
BcnI	CCSGG	6 cut(s)	263, 417, 526, 579, 580, 641
BfaI	CTAG	1 cut(s)	74
BfoI	RGCGCY	2 cut(s)	198, 488
BglI	GCCNNNNNGGC	2 cut(s)	566, 665
BisI	GCNGC	6 cut(s)	27, 127, 217, 474, 620, 669
BlnI	CCTAGG	1 cut(s)	73
BlsI	GCNGC	6 cut(s)	28, 128, 218, 475, 621, 670
Bme1390I	CCNGG	6 cut(s)	263, 417, 526, 579, 580, 641
Bme18I	GGWCC	2 cut(s)	42, 419
BmeT110I	CYCGRG	3 cut(s)	234, 578, 648
BmgT120I	GGNCC	5 cut(s)	42, 419, 507, 617, 657
BmiI	GGNNCC	6 cut(s)	25, 321, 414, 472, 486, 645
BmrFI	CCNGG	6 cut(s)	263, 417, 526, 579, 580, 641
BmsI	GCATC	2 cut(s)	390, 694
BpiI	GAAGAC	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	389
BpuMI	CCSGG	6 cut(s)	263, 417, 526, 579, 580, 641
BsaAI	YACGTR	1 cut(s)	481
BsaHI	GRCGYC	2 cut(s)	201, 485
BsaJI	CCNNGG	7 cut(s)	73, 327, 510, 537, 578, 579, 647
BsaWI	WCCGGW	2 cut(s)	428, 467
BsaXI	ACNNNNNCTCC	2 cut(s)	482, 512
Bsc4I	CCNNNNNNNGG	6 cut(s)	139, 229, 428, 504, 532, 615
BseDI	CCNNGG	7 cut(s)	73, 327, 510, 537, 578, 579, 647
BseLI	CCNNNNNNNGG	6 cut(s)	139, 229, 428, 504, 532, 615
BseMII	CTCAG	2 cut(s)	152, 205
BseRI	GAGGAG	1 cut(s)	344
BseX3I	CGGCCG	1 cut(s)	324
BseXI	GCAGC	3 cut(s)	113, 228, 655
BseYI	CCCAGC	1 cut(s)	456
Bsh1285I	CGRYCG	2 cut(s)	327, 530
BshNI	GGYRCC	2 cut(s)	470, 484
BsiEI	CGRYCG	2 cut(s)	327, 530
BsiHKCI	CYCGRG	3 cut(s)	234, 578, 648
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	6 cut(s)	139, 229, 428, 504, 532, 615
BsmFI	GGGAC	1 cut(s)	245
BsoBI	CYCGRG	3 cut(s)	234, 578, 648
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	2 cut(s)	412, 464
BspACI	CCGC	3 cut(s)	27, 474, 620
BspCNI	CTCAG	2 cut(s)	151, 204
BspLI	GGNNCC	6 cut(s)	25, 321, 414, 472, 486, 645
BspPI	GGATC	3 cut(s)	407, 420, 459
BspT107I	GGYRCC	2 cut(s)	470, 484
BssECI	CCNNGG	7 cut(s)	73, 327, 510, 537, 578, 579, 647
BssMI	GATC	2 cut(s)	412, 464
BssNI	GRCGYC	2 cut(s)	201, 485
BssT1I	CCWWGG	2 cut(s)	73, 537
Bst4CI	ACNGT	5 cut(s)	46, 118, 494, 565, 721
Bst6I	CTCTTC	1 cut(s)	191
BstACI	GRCGYC	2 cut(s)	201, 485
BstBAI	YACGTR	1 cut(s)	481
BstC8I	GCNNGC	2 cut(s)	16, 231
BstDEI	CTNAG	2 cut(s)	138, 191
BstDSI	CCRYGG	1 cut(s)	510
BstH2I	RGCGCY	2 cut(s)	198, 488
BstHHI	GCGC	3 cut(s)	197, 384, 487
BstKTI	GATC	2 cut(s)	415, 467
BstMBI	GATC	2 cut(s)	412, 464
BstMCI	CGRYCG	2 cut(s)	327, 530
BstMWI	GCNNNNNNNGC	4 cut(s)	213, 482, 566, 665
BstNSI	RCATGY	1 cut(s)	448
BstSCI	CCNGG	6 cut(s)	261, 415, 524, 577, 578, 639
BstV1I	GCAGC	3 cut(s)	113, 228, 655
BstV2I	GAAGAC	1 cut(s)	441
BstX2I	RGATCY	2 cut(s)	412, 464
BstYI	RGATCY	2 cut(s)	412, 464
BstZI	CGGCCG	1 cut(s)	324
BtgI	CCRYGG	1 cut(s)	510
BtsIMutI	CAGTG	3 cut(s)	561, 591, 717
Cac8I	GCNNGC	2 cut(s)	16, 231
CfoI	GCGC	3 cut(s)	197, 384, 487
Cfr13I	GGNCC	5 cut(s)	42, 419, 507, 617, 657
Cfr9I	CCCGGG	1 cut(s)	578
CpoI	CGGWCCG	2 cut(s)	42, 419
CseI	GACGC	2 cut(s)	208, 331
CspI	CGGWCCG	2 cut(s)	42, 419
CviAII	CATG	2 cut(s)	445, 556
DdeI	CTNAG	2 cut(s)	138, 191
DinI	GGCGCC	1 cut(s)	486
DpnI	GATC	2 cut(s)	414, 466
DpnII	GATC	2 cut(s)	412, 464
DrdI	GACNNNNNNGTC	2 cut(s)	344, 356
DseDI	GACNNNNNNGTC	2 cut(s)	344, 356
EaeI	YGGCCR	5 cut(s)	99, 324, 423, 534, 558
EagI	CGGCCG	1 cut(s)	324
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
EclXI	CGGCCG	1 cut(s)	324
Eco130I	CCWWGG	2 cut(s)	73, 537
Eco147I	AGGCCT	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	85
Eco32I	GATATC	1 cut(s)	268
Eco47I	GGWCC	2 cut(s)	42, 419
Eco52I	CGGCCG	1 cut(s)	324
Eco72I	CACGTG	1 cut(s)	481
Eco88I	CYCGRG	3 cut(s)	234, 578, 648
EcoRV	GATATC	1 cut(s)	268
EcoT14I	CCWWGG	2 cut(s)	73, 537
EcoT38I	GRGCYC	1 cut(s)	85
EgeI	GGCGCC	1 cut(s)	486
EheI	GGCGCC	1 cut(s)	486
ErhI	CCWWGG	2 cut(s)	73, 537
FaeI	CATG	2 cut(s)	448, 559
FaiI	YATR	7 cut(s)	272, 437, 446, 557, 587, 599, 629
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	2 cut(s)	444, 555
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	6 cut(s)	27, 127, 217, 474, 620, 669
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	6 cut(s)	27, 127, 217, 474, 620, 669
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	3 cut(s)	196, 383, 486
GluI	GCNGC	6 cut(s)	27, 127, 217, 474, 620, 669
GsaI	CCCAGC	1 cut(s)	460
HaeII	RGCGCY	2 cut(s)	198, 488
HgaI	GACGC	2 cut(s)	208, 331
HhaI	GCGC	3 cut(s)	197, 384, 487
Hin1I	GRCGYC	2 cut(s)	201, 485
Hin1II	CATG	2 cut(s)	448, 559
Hin6I	GCGC	3 cut(s)	195, 382, 485
HinP1I	GCGC	3 cut(s)	195, 382, 485
HincII	GTYRAC	2 cut(s)	349, 442
HindII	GTYRAC	2 cut(s)	349, 442
HinfI	GANTC	3 cut(s)	258, 288, 432
HphI	GGTGA	2 cut(s)	73, 142
Hpy166II	GTNNAC	3 cut(s)	277, 349, 442
Hpy188I	TCNGA	5 cut(s)	42, 166, 175, 399, 725
Hpy188III	TCNNGA	2 cut(s)	140, 406
Hpy8I	GTNNAC	3 cut(s)	277, 349, 442
Hpy99I	CGWCG	3 cut(s)	203, 347, 350
HpyAV	CCTTC	2 cut(s)	247, 544
HpyCH4III	ACNGT	5 cut(s)	46, 118, 494, 565, 721
HpyCH4IV	ACGT	4 cut(s)	6, 201, 375, 480
HpyCH4V	TGCA	1 cut(s)	685
HpyF10VI	GCNNNNNNNGC	4 cut(s)	213, 482, 566, 665
HpyF3I	CTNAG	2 cut(s)	138, 191
HpySE526I	ACGT	4 cut(s)	6, 201, 375, 480
Hsp92I	GRCGYC	2 cut(s)	201, 485
Hsp92II	CATG	2 cut(s)	448, 559
HspAI	GCGC	3 cut(s)	195, 382, 485
KasI	GGCGCC	1 cut(s)	484
Kzo9I	GATC	2 cut(s)	412, 464
LmnI	GCTCC	3 cut(s)	23, 134, 643
Lsp1109I	GCAGC	3 cut(s)	113, 228, 655
LweI	GCATC	2 cut(s)	390, 694
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	4 cut(s)	6, 201, 375, 480
MaeIII	GTNAC	1 cut(s)	635
MalI	GATC	2 cut(s)	414, 466
MboI	GATC	2 cut(s)	412, 464
MboII	GAAGA	3 cut(s)	178, 262, 441
MflI	RGATCY	2 cut(s)	412, 464
MhlI	GDGCHC	1 cut(s)	85
MlsI	TGGCCA	3 cut(s)	101, 536, 560
MluNI	TGGCCA	3 cut(s)	101, 536, 560
Mly113I	GGCGCC	1 cut(s)	485
MlyI	GAGTC	2 cut(s)	267, 297
MmeI	TCCRAC	2 cut(s)	20, 198
Mox20I	TGGCCA	3 cut(s)	101, 536, 560
MscI	TGGCCA	3 cut(s)	101, 536, 560
MslI	CAYNNNNRTG	1 cut(s)	596
Msp20I	TGGCCA	3 cut(s)	101, 536, 560
MspA1I	CMGCKG	1 cut(s)	698
MspR9I	CCNGG	6 cut(s)	263, 417, 526, 579, 580, 641
MwoI	GCNNNNNNNGC	4 cut(s)	213, 482, 566, 665
NarI	GGCGCC	1 cut(s)	485
NciI	CCSGG	6 cut(s)	263, 417, 526, 579, 580, 641
NdeII	GATC	2 cut(s)	412, 464
NlaIII	CATG	2 cut(s)	448, 559
NlaIV	GGNNCC	6 cut(s)	25, 321, 414, 472, 486, 645
NmeAIII	GCCGAG	2 cut(s)	104, 352
NspI	RCATGY	1 cut(s)	448
PceI	AGGCCT	1 cut(s)	72
PciI	ACATGT	1 cut(s)	444
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	432
PflFI	GACNNNGTC	2 cut(s)	341, 526
PflMI	CCANNNNNTGG	1 cut(s)	229
PfoI	TCCNGGA	1 cut(s)	261
PkrI	GCNGC	6 cut(s)	28, 128, 218, 475, 621, 670
PleI	GAGTC	2 cut(s)	266, 296
PluTI	GGCGCC	1 cut(s)	488
PmaCI	CACGTG	1 cut(s)	481
PmlI	CACGTG	1 cut(s)	481
PpsI	GAGTC	2 cut(s)	266, 296
Ppu21I	YACGTR	1 cut(s)	481
PscI	ACATGT	1 cut(s)	444
PspCI	CACGTG	1 cut(s)	481
PspFI	CCCAGC	1 cut(s)	456
PspN4I	GGNNCC	6 cut(s)	25, 321, 414, 472, 486, 645
PspPI	GGNCC	5 cut(s)	42, 419, 507, 617, 657
PsuI	RGATCY	2 cut(s)	412, 464
PsyI	GACNNNGTC	2 cut(s)	341, 526
PvuII	CAGCTG	1 cut(s)	698
RseI	CAYNNNNRTG	1 cut(s)	596
Rsr2I	CGGWCCG	2 cut(s)	42, 419
RsrII	CGGWCCG	2 cut(s)	42, 419
SalI	GTCGAC	1 cut(s)	347
SatI	GCNGC	6 cut(s)	27, 127, 217, 474, 620, 669
Sau3AI	GATC	2 cut(s)	412, 464
Sau96I	GGNCC	5 cut(s)	42, 419, 507, 617, 657
SchI	GAGTC	2 cut(s)	267, 297
ScrFI	CCNGG	6 cut(s)	263, 417, 526, 579, 580, 641
SduI	GDGCHC	1 cut(s)	85
SfaNI	GCATC	2 cut(s)	390, 694
SfoI	GGCGCC	1 cut(s)	486
SinI	GGWCC	2 cut(s)	42, 419
SmaI	CCCGGG	1 cut(s)	580
SmiMI	CAYNNNNRTG	1 cut(s)	596
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
SseBI	AGGCCT	1 cut(s)	72
SsiI	CCGC	3 cut(s)	27, 474, 620
SspDI	GGCGCC	1 cut(s)	484
SspMI	CTAG	1 cut(s)	74
StuI	AGGCCT	1 cut(s)	72
StyD4I	CCNGG	6 cut(s)	261, 415, 524, 577, 578, 639
StyI	CCWWGG	2 cut(s)	73, 537
TaaI	ACNGT	5 cut(s)	46, 118, 494, 565, 721
TaiI	ACGT	4 cut(s)	9, 204, 378, 483
TaqI	TCGA	3 cut(s)	209, 336, 348
TauI	GCSGC	3 cut(s)	29, 476, 622
TfiI	GAWTC	1 cut(s)	432
TscAI	CASTG	3 cut(s)	568, 598, 724
TseI	GCWGC	3 cut(s)	126, 216, 668
TspDTI	ATGAA	2 cut(s)	17, 379
TspMI	CCCGGG	1 cut(s)	578
TspRI	CASTG	3 cut(s)	568, 598, 724
Tth111I	GACNNNGTC	2 cut(s)	341, 526
Van91I	CCANNNNNTGG	1 cut(s)	229
VpaK11BI	GGWCC	2 cut(s)	42, 419
XceI	RCATGY	1 cut(s)	448
XcmI	CCANNNNNNNNNTGG	1 cut(s)	508
XmaI	CCCGGG	1 cut(s)	578
XmaJI	CCTAGG	1 cut(s)	73
XmiI	GTMKAC	1 cut(s)	348
XspI	CTAG	1 cut(s)	74
ZraI	GACGTC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.