Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000713

Physical Location & Seq

Genomic Coordinates Reverse (-)

66102777 .. 66105267

Gene Structure 2491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG475100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCCATGTGTTGATCAAGTGTTTATACTTTATAGTTATATGAGAGTGGTTTTAATAATCATCTCATGTGAGTCCTTTTTTCTTTATTTTGTAAGTGCTAATACCCTTCAGACCTTGAGACTGCGAAGAAGTGAAATGAGTGATTCAGTGGTAGAACAGACAATTGGAAGGTTTTCTAATATCACCTTCTTGGATCTTAGCTACTGTGGTAAAATTGGTAGTCGTGCTCTAAAGGCCATCGGAATGAACTGTAAATTGCTCATGGGACTGTGCCGGAACATACATCCATCGTACTCTGCAGGCATCCATATGAATGATGAGGCTGATGCCATTGCCACCACAATGCCTAGACTGAAGCACCTTGAGATGGCATACCATATCATCAACACACAAGGGGCTCTTCAAATACTCGAAAGCTGCCCTGATCTTGAATTTTTGGATTTAAGAGGGTGTTGGGATGTTCAGCTTGATGATAAGTTCTTGGGGGAGAAGTTCCCAAAATTGAAGGTTCTAGGGCCTCCTGCGGACTACTACAATGATGAGGACTTGGAATGTTGCATGGATAACTCAGATGCTTCTTCTGACGGTTCCCCCTTCGAATATGAGGATCTATCTGAGGAATATCTGTCCGACGAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

F-box F-box-like LRR_6 Laminin_G_3

Protein Analysis

213

Amino Acids

24.22

Weight (kDa)

4.49

Isoelectric Point (pI)

56.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08980 AT4G08980 AT4G08980 AT4G08980 AT4G08980
fragaria_vesca	FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36840 FvH4_5g36840 FvH4_5g36840
malus_domestica	MD01G1033400.v1.1 MD08G1186500.v1.1 MD15G1372500.v1.1
prunus_persica	Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1
pyrus_communis	pycom01g06090 pycom08g16030 pycom15g33350
rosa_chinensis	RchiOBHm_Chr2g0112771 RchiOBHm_Chr7g0243381 RchiOBHm_Chr7g0243391
rosa_laevigata	RLG00000000850 RLG00000000851 RLG00000018008
rosa_multiflora	Rmu_co8087500.1_g000001 Rmu_sc0001036.1_g000019 Rmu_sc0001036.1_g000027 Rmu_sc0001708.1_g000033 Rmu_sc0004612.1_g000003 Rmu_sc0024527.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131160 Rroxscaffold_3G00222130 Rroxscaffold_3G00222140
rosa_rugosa	Rorug02G0182300 Rorug02G0182400 Rorug02G0182500 Rorug02G0182600 Rorug07G0318700 Rorug07G0318800 Rorug07G0318900 Rorug07G0319000 Rorug07G0319000
rosa_samantha	Rh2AG237000 Rh2BG249900 Rh2CG241000 Rh2DG244500 Rh7AG475000 Rh7AG475100 Rh7BG444900 Rh7BG445000 Rh7CG491200 Rh7CG491300 Rh7DG459500 Rh7DG459600
rosa_wichuraiana	Rw2G018330 Rw7G039500 Rw7G039520 Rw7G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	524
AclWI	GGATC	2 cut(s)	201, 615
AcsI	RAATTY	1 cut(s)	431
AcuI	CTGAAG	2 cut(s)	92, 374
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	367
AgsI	TTSAA	3 cut(s)	404, 431, 505
AjuI	GAANNNNNNNTTGG	2 cut(s)	147, 179
AluBI	AGCT	3 cut(s)	201, 417, 466
AluI	AGCT	3 cut(s)	201, 417, 466
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	2 cut(s)	201, 615
AoxI	GGCC	2 cut(s)	234, 515
ApeKI	GCWGC	1 cut(s)	417
ApoI	RAATTY	1 cut(s)	431
Asp700I	GAANNNNTTC	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	515
AsuHPI	GGTGA	1 cut(s)	175
AsuII	TTCGAA	1 cut(s)	597
BanII	GRGCYC	1 cut(s)	400
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	404
BccI	CCATC	3 cut(s)	245, 295, 361
BclI	TGATCA	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	2 cut(s)	348, 512
BfmI	CTRYAG	1 cut(s)	297
BisI	GCNGC	1 cut(s)	418
BlsI	GCNGC	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	515
BmiI	GGNNCC	1 cut(s)	589
BmsI	GCATC	3 cut(s)	312, 316, 562
Bpu14I	TTCGAA	1 cut(s)	597
BpuEI	CTTGAG	2 cut(s)	136, 383
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse3DI	GCAATG	1 cut(s)	330
BseGI	GGATG	3 cut(s)	283, 303, 463
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	2 cut(s)	582, 606
BseXI	GCAGC	1 cut(s)	404
BshFI	GGCC	2 cut(s)	236, 517
BsiHKAI	GWGCWC	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	274
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmAI	GTCTC	1 cut(s)	112
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	2 cut(s)	236, 517
Bsp119I	TTCGAA	1 cut(s)	597
Bsp1286I	GDGCHC	2 cut(s)	229, 400
Bsp143I	GATC	4 cut(s)	13, 193, 424, 607
BspACI	CCGC	1 cut(s)	524
BspANI	GGCC	2 cut(s)	236, 517
BspCNI	CTCAG	2 cut(s)	581, 607
BspLI	GGNNCC	1 cut(s)	589
BspMAI	CTGCAG	1 cut(s)	301
BspPI	GGATC	2 cut(s)	201, 615
BspQI	GCTCTTC	1 cut(s)	405
BspT104I	TTCGAA	1 cut(s)	597
BsrDI	GCAATG	1 cut(s)	330
BssMI	GATC	4 cut(s)	13, 193, 424, 607
Bst4CI	ACNGT	4 cut(s)	206, 251, 270, 587
Bst6I	CTCTTC	1 cut(s)	405
BstBI	TTCGAA	1 cut(s)	597
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	3 cut(s)	197, 568, 615
BstF5I	GGATG	3 cut(s)	283, 303, 463
BstKTI	GATC	4 cut(s)	16, 196, 427, 610
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	4 cut(s)	13, 193, 424, 607
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstSFI	CTRYAG	1 cut(s)	297
BstV1I	GCAGC	1 cut(s)	404
BstX2I	RGATCY	2 cut(s)	193, 607
BstYI	RGATCY	2 cut(s)	193, 607
BsuRI	GGCC	2 cut(s)	236, 517
BtsCI	GGATG	3 cut(s)	283, 303, 463
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	515
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	4 cut(s)	6, 66, 262, 559
CviJI	RGCY	7 cut(s)	201, 236, 323, 398, 417, 466, 517
CviKI_1	RGCY	7 cut(s)	201, 236, 323, 398, 417, 466, 517
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	3 cut(s)	197, 568, 615
DpnI	GATC	4 cut(s)	15, 195, 426, 609
DpnII	GATC	4 cut(s)	13, 193, 424, 607
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco24I	GRGCYC	1 cut(s)	400
Eco57I	CTGAAG	2 cut(s)	92, 374
EcoO109I	RGGNCCY	1 cut(s)	515
EcoT38I	GRGCYC	1 cut(s)	400
FaeI	CATG	4 cut(s)	9, 69, 265, 562
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	4 cut(s)	5, 65, 261, 558
FauNDI	CATATG	1 cut(s)	309
FbaI	TGATCA	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	418
FokI	GGATG	3 cut(s)	270, 290, 470
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	1 cut(s)	418
FspBI	CTAG	2 cut(s)	348, 512
GluI	GCNGC	1 cut(s)	418
HaeIII	GGCC	2 cut(s)	236, 517
HapII	CCGG	1 cut(s)	274
Hin1II	CATG	4 cut(s)	9, 69, 265, 562
HinfI	GANTC	2 cut(s)	71, 143
HpaII	CCGG	1 cut(s)	274
HphI	GGTGA	1 cut(s)	175
Hpy188I	TCNGA	6 cut(s)	111, 242, 571, 583, 616, 631
Hpy188III	TCNNGA	1 cut(s)	428
Hpy99I	CGWCG	1 cut(s)	635
HpyAV	CCTTC	5 cut(s)	116, 162, 196, 499, 604
HpyCH4III	ACNGT	4 cut(s)	206, 251, 270, 587
HpyCH4V	TGCA	2 cut(s)	299, 558
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	3 cut(s)	197, 568, 615
Hsp92II	CATG	4 cut(s)	9, 69, 265, 562
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	4 cut(s)	13, 193, 424, 607
LguI	GCTCTTC	1 cut(s)	405
LpnPI	CCDG	4 cut(s)	285, 287, 435, 534
Lsp1109I	GCAGC	1 cut(s)	404
LweI	GCATC	3 cut(s)	312, 316, 562
MaeI	CTAG	2 cut(s)	348, 512
MalI	GATC	4 cut(s)	15, 195, 426, 609
MboI	GATC	4 cut(s)	13, 193, 424, 607
MboII	GAAGA	3 cut(s)	138, 392, 570
MfeI	CAATTG	1 cut(s)	162
MflI	RGATCY	2 cut(s)	193, 607
MhlI	GDGCHC	2 cut(s)	229, 400
MluCI	AATT	5 cut(s)	162, 213, 254, 431, 500
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	6 cut(s)	313, 440, 528, 535, 598, 610
MroXI	GAANNNNTTC	1 cut(s)	172
MseI	TTAA	2 cut(s)	53, 443
MslI	CAYNNNNRTG	4 cut(s)	242, 308, 312, 341
MspI	CCGG	1 cut(s)	274
MunI	CAATTG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeI	CATATG	1 cut(s)	309
NdeII	GATC	4 cut(s)	13, 193, 424, 607
NlaIII	CATG	4 cut(s)	9, 69, 265, 562
NlaIV	GGNNCC	1 cut(s)	589
NspV	TTCGAA	1 cut(s)	597
PciSI	GCTCTTC	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	419
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	589
PspPI	GGNCC	1 cut(s)	515
PstI	CTGCAG	1 cut(s)	301
PsuI	RGATCY	2 cut(s)	193, 607
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
RseI	CAYNNNNRTG	4 cut(s)	242, 308, 312, 341
SapI	GCTCTTC	1 cut(s)	405
SaqAI	TTAA	2 cut(s)	53, 443
SatI	GCNGC	1 cut(s)	418
Sau3AI	GATC	4 cut(s)	13, 193, 424, 607
Sau96I	GGNCC	1 cut(s)	515
SchI	GAGTC	1 cut(s)	80
SduI	GDGCHC	2 cut(s)	229, 400
SetI	ASST	8 cut(s)	116, 173, 188, 203, 363, 419, 468, 510
SfaNI	GCATC	3 cut(s)	312, 316, 562
SfcI	CTRYAG	1 cut(s)	297
SfuI	TTCGAA	1 cut(s)	597
SmiMI	CAYNNNNRTG	4 cut(s)	242, 308, 312, 341
SmlI	CTYRAG	2 cut(s)	115, 362
SmoI	CTYRAG	2 cut(s)	115, 362
Sse9I	AATT	5 cut(s)	162, 213, 254, 431, 500
SsiI	CCGC	1 cut(s)	524
SspMI	CTAG	2 cut(s)	348, 512
TaaI	ACNGT	4 cut(s)	206, 251, 270, 587
TaqI	TCGA	2 cut(s)	411, 597
TasI	AATT	5 cut(s)	162, 213, 254, 431, 500
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	2 cut(s)	53, 443
Tru9I	TTAA	2 cut(s)	53, 443
TscAI	CASTG	1 cut(s)	153
TseI	GCWGC	1 cut(s)	417
TspDTI	ATGAA	2 cut(s)	260, 326
TspRI	CASTG	1 cut(s)	153
XapI	RAATTY	1 cut(s)	431
XmnI	GAANNNNTTC	1 cut(s)	172
XspI	CTAG	2 cut(s)	348, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.