Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000713

Physical Location & Seq

Genomic Coordinates Forward (+)

42733422 .. 42737053

Gene Structure 3632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G521100.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGAAGTGGGAACTGATTTTCGGCATTGGGACGAATTAATACCAGATGCATTGGGTCTGATTTTCAGCAACCTTACTCTCCAGGATATACTAACAGTGATCCCAAGGGTTTGCCAATCCTGGAGCAAGGTAGCGATGGGGCCTTACTGTTGGCAAGAGATAGACATTGAGGAATGGAGTAATAGATGCCAGCCTCAGCACCTTGATCGTATGCTTCAAATGCTGATTGCAAGAAGTTGTGGATCGCTCCGAAAGCTCTGTGTTTCTGGCCTCCAAAATGACATGATGTTCTCCTACATCACTGAACATGCTGGTTCTCTTCAGACCTTGAGACTGCCAAGAAGTGAAATAGGTGATTCAATAGTAGAACAGACAGCTGGAAGGCTTTCTACTATCACTTTCTTGGATCTTAGCTACTGTGGCAAAATTGGTTCTCGGGCTTTAGAGGCAATCGGAAAGAACTGTAAATTGCTCGTGGGGTTGTGCCGGAACATGCACCCATTGGATACAGCAGGCAAGCCTTTGATGGATGAGGAGGCTCATGCCATTGCCACCACAATGCCTAGGCTGAAGCACCTTGAGATGGCATACCATCTTATCAGCACAAAAAGCGCTCTTCAAATACTCTCAAACTGCACCGAGCTCGAGTTTTTGGATTTGAGAGGGTGTTGGGATGTTCAACTTGAGGACAAGTTCCTCAAGGAAAAGTACCCAAAATTGAAGGTTTTAGGGCCTCTTATTCTGGACTACTATGAGAGGAATGAGTGGGAAGATTGCTCCGATTTCTCAGATGCTTCTGAGTATTTGGCCTGGGAATTTGTGGCTGGTGAATTGGAGGATTACTATGATGATGATGATGATGTGAGTTATGATGGAATGTGGGATGATGAGGGAAGGCTGGAGGAGCTTGAGCTGAGGTTCTATGAAGGAATTGATCAGAATGGGGATGCAGTGTATGGAGGGCATGGTTGGCCTCCATCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

329

Amino Acids

37.49

Weight (kDa)

4.52

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08980 AT4G08980 AT4G08980 AT4G08980 AT4G08980
fragaria_vesca	FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36840 FvH4_5g36840 FvH4_5g36840
malus_domestica	MD01G1033400.v1.1 MD08G1186500.v1.1 MD15G1372500.v1.1
prunus_persica	Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1
pyrus_communis	pycom01g06090 pycom08g16030 pycom15g33350
rosa_chinensis	RchiOBHm_Chr2g0112771 RchiOBHm_Chr7g0243381 RchiOBHm_Chr7g0243391
rosa_laevigata	RLG00000000850 RLG00000000851 RLG00000018008
rosa_multiflora	Rmu_co8087500.1_g000001 Rmu_sc0001036.1_g000019 Rmu_sc0001036.1_g000027 Rmu_sc0001708.1_g000033 Rmu_sc0004612.1_g000003 Rmu_sc0024527.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131160 Rroxscaffold_3G00222130 Rroxscaffold_3G00222140
rosa_rugosa	Rorug02G0182300 Rorug02G0182400 Rorug02G0182500 Rorug02G0182600 Rorug07G0318700 Rorug07G0318800 Rorug07G0318900 Rorug07G0319000 Rorug07G0319000
rosa_samantha	Rh2AG237000 Rh2BG249900 Rh2CG241000 Rh2DG244500 Rh7AG475000 Rh7AG475100 Rh7BG444900 Rh7BG445000 Rh7CG491200 Rh7CG491300 Rh7DG459500 Rh7DG459600
rosa_wichuraiana	Rw2G018330 Rw7G039500 Rw7G039520 Rw7G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	94, 250, 414
AcsI	RAATTY	1 cut(s)	815
AcuI	CTGAAG	2 cut(s)	305, 590
AfaI	GTAC	1 cut(s)	710
AfeI	AGCGCT	1 cut(s)	613
AfiI	CCNNNNNNNGG	1 cut(s)	583
AgsI	TTSAA	5 cut(s)	218, 360, 620, 680, 721
AjnI	CCWGG	3 cut(s)	81, 119, 809
AluBI	AGCT	6 cut(s)	256, 377, 414, 643, 907, 913
AluI	AGCT	6 cut(s)	256, 377, 414, 643, 907, 913
Alw21I	GWGCWC	1 cut(s)	645
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	3 cut(s)	94, 250, 414
Ama87I	CYCGRG	2 cut(s)	435, 644
Aor51HI	AGCGCT	1 cut(s)	613
AoxI	GGCC	5 cut(s)	140, 268, 731, 807, 971
ApoI	RAATTY	1 cut(s)	815
AseI	ATTAAT	1 cut(s)	38
Asp700I	GAANNNNTTC	1 cut(s)	385
AspA2I	CCTAGG	1 cut(s)	563
AspLEI	GCGC	1 cut(s)	614
AspS9I	GGNCC	2 cut(s)	140, 731
AsuHPI	GGTGA	2 cut(s)	365, 839
AvaI	CYCGRG	2 cut(s)	435, 644
AvrII	CCTAGG	1 cut(s)	563
BanII	GRGCYC	1 cut(s)	645
BarI	GAAGNNNNNNTAC	2 cut(s)	373, 405
BauI	CACGAG	1 cut(s)	473
Bbv12I	GWGCWC	1 cut(s)	645
BbvCI	CCTCAGC	2 cut(s)	195, 914
BccI	CCATC	6 cut(s)	130, 520, 577, 600, 866, 985
BcgI	CGANNNNNNTGC	4 cut(s)	188, 222, 625, 659
BciT130I	CCWGG	3 cut(s)	83, 121, 811
BciVI	GTATCC	1 cut(s)	499
BclI	TGATCA	1 cut(s)	934
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	1 cut(s)	564
BfoI	RGCGCY	1 cut(s)	615
BfuI	GTATCC	1 cut(s)	499
BlnI	CCTAGG	1 cut(s)	563
Bme1390I	CCNGG	3 cut(s)	83, 121, 811
BmeT110I	CYCGRG	2 cut(s)	435, 644
BmgT120I	GGNCC	2 cut(s)	140, 731
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	3 cut(s)	83, 121, 811
BmsI	GCATC	4 cut(s)	37, 176, 781, 937
BpmI	CTGGAG	3 cut(s)	65, 142, 920
Bpu10I	CCTNAGC	2 cut(s)	195, 914
BpuEI	CTTGAG	5 cut(s)	349, 599, 683, 704, 929
BsaJI	CCNNGG	3 cut(s)	104, 563, 810
Bsc4I	CCNNNNNNNGG	1 cut(s)	583
Bse3DI	GCAATG	1 cut(s)	546
BseBI	CCWGG	3 cut(s)	83, 121, 811
BseDI	CCNNGG	3 cut(s)	104, 563, 810
BseGI	GGATG	4 cut(s)	535, 679, 889, 952
BseLI	CCNNNNNNNGG	1 cut(s)	583
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	4 cut(s)	209, 789, 801, 905
BseRI	GAGGAG	2 cut(s)	548, 917
BsgI	GTGCAG	1 cut(s)	619
BshFI	GGCC	5 cut(s)	142, 270, 733, 809, 973
BsiHKAI	GWGCWC	1 cut(s)	645
BsiHKCI	CYCGRG	2 cut(s)	435, 644
BsiSI	CCGG	1 cut(s)	487
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	583
BsmAI	GTCTC	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	5 cut(s)	142, 270, 733, 809, 973
BsoBI	CYCGRG	2 cut(s)	435, 644
Bsp1286I	GDGCHC	1 cut(s)	645
Bsp143I	GATC	5 cut(s)	99, 205, 242, 406, 934
BspANI	GGCC	5 cut(s)	142, 270, 733, 809, 973
BspCNI	CTCAG	4 cut(s)	208, 790, 800, 906
BspLI	GGNNCC	1 cut(s)	141
BspPI	GGATC	3 cut(s)	94, 250, 414
BspQI	GCTCTTC	1 cut(s)	621
BsrDI	GCAATG	1 cut(s)	546
BssECI	CCNNGG	3 cut(s)	104, 563, 810
BssMI	GATC	5 cut(s)	99, 205, 242, 406, 934
BssSI	CACGAG	1 cut(s)	473
BssT1I	CCWWGG	2 cut(s)	104, 563
Bst2BI	CACGAG	1 cut(s)	473
Bst2UI	CCWGG	3 cut(s)	83, 121, 811
Bst4CI	ACNGT	4 cut(s)	97, 149, 419, 464
Bst6I	CTCTTC	2 cut(s)	324, 621
BstC8I	GCNNGC	3 cut(s)	191, 514, 518
BstDEI	CTNAG	5 cut(s)	195, 410, 787, 798, 914
BstF5I	GGATG	4 cut(s)	535, 679, 889, 952
BstH2I	RGCGCY	1 cut(s)	615
BstHHI	GCGC	1 cut(s)	614
BstKTI	GATC	5 cut(s)	102, 208, 245, 409, 937
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	5 cut(s)	99, 205, 242, 406, 934
BstMWI	GCNNNNNNNGC	7 cut(s)	220, 253, 420, 446, 609, 904, 970
BstNI	CCWGG	3 cut(s)	83, 121, 811
BstNSI	RCATGY	2 cut(s)	311, 496
BstSCI	CCNGG	3 cut(s)	81, 119, 809
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BsuI	GTATCC	1 cut(s)	499
BsuRI	GGCC	5 cut(s)	142, 270, 733, 809, 973
BtgZI	GCGATG	1 cut(s)	149
BtsCI	GGATG	4 cut(s)	535, 679, 889, 952
BtsI	GCAGTG	1 cut(s)	957
BtsIMutI	CAGTG	3 cut(s)	102, 300, 957
Cac8I	GCNNGC	3 cut(s)	191, 514, 518
CfoI	GCGC	1 cut(s)	614
Cfr13I	GGNCC	2 cut(s)	140, 731
Csp6I	GTAC	1 cut(s)	709
CviAII	CATG	5 cut(s)	283, 308, 493, 542, 965
CviQI	GTAC	1 cut(s)	709
DdeI	CTNAG	5 cut(s)	195, 410, 787, 798, 914
DpnI	GATC	5 cut(s)	101, 207, 244, 408, 936
DpnII	GATC	5 cut(s)	99, 205, 242, 406, 934
Eam1104I	CTCTTC	2 cut(s)	324, 621
EarI	CTCTTC	2 cut(s)	324, 621
Ecl136II	GAGCTC	1 cut(s)	643
Eco130I	CCWWGG	2 cut(s)	104, 563
Eco24I	GRGCYC	1 cut(s)	645
Eco47III	AGCGCT	1 cut(s)	613
Eco53kI	GAGCTC	1 cut(s)	643
Eco57I	CTGAAG	2 cut(s)	305, 590
Eco88I	CYCGRG	2 cut(s)	435, 644
EcoICRI	GAGCTC	1 cut(s)	643
EcoO109I	RGGNCCY	2 cut(s)	140, 731
EcoRII	CCWGG	3 cut(s)	81, 119, 809
EcoT14I	CCWWGG	2 cut(s)	104, 563
EcoT22I	ATGCAT	1 cut(s)	52
EcoT38I	GRGCYC	1 cut(s)	645
ErhI	CCWWGG	2 cut(s)	104, 563
FaeI	CATG	5 cut(s)	286, 311, 496, 545, 968
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	5 cut(s)	282, 307, 492, 541, 964
FbaI	TGATCA	1 cut(s)	934
FokI	GGATG	4 cut(s)	542, 686, 896, 959
FriOI	GRGCYC	1 cut(s)	645
FspBI	CTAG	1 cut(s)	564
GlaI	GCGC	1 cut(s)	613
GsuI	CTGGAG	3 cut(s)	65, 142, 920
HaeII	RGCGCY	1 cut(s)	615
HaeIII	GGCC	5 cut(s)	142, 270, 733, 809, 973
HapII	CCGG	1 cut(s)	487
HhaI	GCGC	1 cut(s)	614
Hin1II	CATG	5 cut(s)	286, 311, 496, 545, 968
Hin6I	GCGC	1 cut(s)	612
HinP1I	GCGC	1 cut(s)	612
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	1 cut(s)	487
HphI	GGTGA	2 cut(s)	365, 839
Hpy188I	TCNGA	8 cut(s)	60, 251, 324, 455, 781, 790, 799, 939
Hpy188III	TCNNGA	1 cut(s)	743
HpyAV	CCTTC	4 cut(s)	375, 715, 888, 920
HpyCH4III	ACNGT	4 cut(s)	97, 149, 419, 464
HpyCH4V	TGCA	5 cut(s)	50, 230, 496, 636, 950
HpyF10VI	GCNNNNNNNGC	7 cut(s)	220, 253, 420, 446, 609, 904, 970
HpyF3I	CTNAG	5 cut(s)	195, 410, 787, 798, 914
Hsp92II	CATG	5 cut(s)	286, 311, 496, 545, 968
HspAI	GCGC	1 cut(s)	612
Ksp22I	TGATCA	1 cut(s)	934
Kzo9I	GATC	5 cut(s)	99, 205, 242, 406, 934
LguI	GCTCTTC	1 cut(s)	621
LmnI	GCTCC	4 cut(s)	123, 252, 782, 904
LweI	GCATC	4 cut(s)	37, 176, 781, 937
MaeI	CTAG	1 cut(s)	564
MalI	GATC	5 cut(s)	101, 207, 244, 408, 936
MboI	GATC	5 cut(s)	99, 205, 242, 406, 934
MboII	GAAGA	3 cut(s)	311, 608, 782
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	1 cut(s)	645
MluCI	AATT	7 cut(s)	35, 426, 467, 716, 815, 830, 930
Mph1103I	ATGCAT	1 cut(s)	52
MroXI	GAANNNNTTC	1 cut(s)	385
MseI	TTAA	2 cut(s)	38, 985
MslI	CAYNNNNRTG	1 cut(s)	557
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	1 cut(s)	487
MspR9I	CCNGG	3 cut(s)	83, 121, 811
MvaI	CCWGG	3 cut(s)	83, 121, 811
MwoI	GCNNNNNNNGC	7 cut(s)	220, 253, 420, 446, 609, 904, 970
NdeII	GATC	5 cut(s)	99, 205, 242, 406, 934
NlaIII	CATG	5 cut(s)	286, 311, 496, 545, 968
NlaIV	GGNNCC	1 cut(s)	141
NsiI	ATGCAT	1 cut(s)	52
NspI	RCATGY	2 cut(s)	311, 496
PaeR7I	CTCGAG	1 cut(s)	644
PciSI	GCTCTTC	1 cut(s)	621
PdmI	GAANNNNTTC	1 cut(s)	385
PfeI	GAWTC	1 cut(s)	356
PfoI	TCCNGGA	2 cut(s)	81, 119
PshBI	ATTAAT	1 cut(s)	38
Psp124BI	GAGCTC	1 cut(s)	645
Psp6I	CCWGG	3 cut(s)	81, 119, 809
PspGI	CCWGG	3 cut(s)	81, 119, 809
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	2 cut(s)	140, 731
PspXI	VCTCGAGB	1 cut(s)	644
PsuI	RGATCY	1 cut(s)	406
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	1 cut(s)	710
RsaNI	GTAC	1 cut(s)	709
RseI	CAYNNNNRTG	1 cut(s)	557
SacI	GAGCTC	1 cut(s)	645
SapI	GCTCTTC	1 cut(s)	621
SaqAI	TTAA	2 cut(s)	38, 985
Sau3AI	GATC	5 cut(s)	99, 205, 242, 406, 934
Sau96I	GGNCC	2 cut(s)	140, 731
ScrFI	CCNGG	3 cut(s)	83, 121, 811
SduI	GDGCHC	1 cut(s)	645
SfaNI	GCATC	4 cut(s)	37, 176, 781, 937
Sfr274I	CTCGAG	1 cut(s)	644
SlaI	CTCGAG	1 cut(s)	644
SmiMI	CAYNNNNRTG	1 cut(s)	557
SmlI	CTYRAG	6 cut(s)	328, 578, 644, 683, 698, 908
SmoI	CTYRAG	6 cut(s)	328, 578, 644, 683, 698, 908
Sse9I	AATT	7 cut(s)	35, 426, 467, 716, 815, 830, 930
SspMI	CTAG	1 cut(s)	564
SstI	GAGCTC	1 cut(s)	645
StyD4I	CCNGG	3 cut(s)	81, 119, 809
StyI	CCWWGG	2 cut(s)	104, 563
TaaI	ACNGT	4 cut(s)	97, 149, 419, 464
TaqI	TCGA	1 cut(s)	645
TasI	AATT	7 cut(s)	35, 426, 467, 716, 815, 830, 930
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	2 cut(s)	38, 985
Tru9I	TTAA	2 cut(s)	38, 985
TscAI	CASTG	3 cut(s)	102, 307, 957
TspDTI	ATGAA	1 cut(s)	939
TspRI	CASTG	3 cut(s)	102, 307, 957
VspI	ATTAAT	1 cut(s)	38
XapI	RAATTY	1 cut(s)	815
XceI	RCATGY	2 cut(s)	311, 496
XhoI	CTCGAG	1 cut(s)	644
XmaJI	CCTAGG	1 cut(s)	563
XmnI	GAANNNNTTC	1 cut(s)	385
XspI	CTAG	1 cut(s)	564
Zsp2I	ATGCAT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.