Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000713

Physical Location & Seq

Genomic Coordinates Reverse (-)

26996188 .. 26999626

Gene Structure 3439 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g36830.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGAGGTGGCAAGTGTGGCAAGTGATTTTAGGCAATGGGACGAATTAATACCCGATGCATTGGGTCTAATCTTCAAAAACCTGTCTCTTAAGGAGATGCTGACAGTGATTCCAATGGTGTGCAAATCATGGGGTAAGGCAGTATTGGGGCCTTACTGCTGGCAAGAGATAGACATTGAGGAATGGAGTGAGAGATGCCCGGAACCTCAGCACCTCGATCGTATGATACAAATGCTGATTTCAAGAAGCTGTGGATCTCTCAGAAAGCTTTGTGTTTCAGGCCTCAAAAATGACATGATCTTCTCCTTCATTGCTGAACATTCTAATTCCCTTCAGACCTTGAGTCTGCCAAGAAGTGAAATAAGTGATTCGATAGTGGAACAAACGATTGGAAGGCTTTCTCACATCACTTTCTTGGATCTTAGCTACTGTGGGAAGATCAGTTTTCGTGCTTTGGAAGTCATTGGAAAGAACTGTAAATTGCTTGTGAAGTTGTTTCGGAACATGCATCCGGTTGATACAGTTGGCATGCCTATTGCGGATGATGAGGCCAATGCCATTGCGGCGACAATGCCTAGATTGAAGCACCTCGAGCTGGCATACCATGTCATTAGCACGCAGAGTGCACTTCAGATACTCAAGAGCTGCCCCGAGCTTGAGTTGTTGGATTTGAGAGGATGTTGGGGTGTTAAGATTGATGATGAAAAGTACTTAGAGAAGAAGTTTCCGAAAGTGAAGGTTTTAGGGCCTCTTGTTGAGGATTTCTATGAGGGAAATGAGTGGGATGACAACTCATTTTACTCTGATGCTTCTTCCGAGTATTTAGCCTGGGAATTTGTGGATGATGATGAAGATTTTGATGATGACGAAGATTTTGATGATGACATGTGGGATGGTGATGGAAGACTGGAGCAGCTTGAGTTGAGGTTCTATCAAGGAAACGAACATGAGACTGAAGGAGGGTTTGGTTGGCCTCCATCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

F-box F-box-like LRR_6 Laminin_G_3

Protein Analysis

329

Amino Acids

37.51

Weight (kDa)

4.47

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08980 AT4G08980 AT4G08980 AT4G08980 AT4G08980
fragaria_vesca	FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36840 FvH4_5g36840 FvH4_5g36840
malus_domestica	MD01G1033400.v1.1 MD08G1186500.v1.1 MD15G1372500.v1.1
prunus_persica	Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1
pyrus_communis	pycom01g06090 pycom08g16030 pycom15g33350
rosa_chinensis	RchiOBHm_Chr2g0112771 RchiOBHm_Chr7g0243381 RchiOBHm_Chr7g0243391
rosa_laevigata	RLG00000000850 RLG00000000851 RLG00000018008
rosa_multiflora	Rmu_co8087500.1_g000001 Rmu_sc0001036.1_g000019 Rmu_sc0001036.1_g000027 Rmu_sc0001708.1_g000033 Rmu_sc0004612.1_g000003 Rmu_sc0024527.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131160 Rroxscaffold_3G00222130 Rroxscaffold_3G00222140
rosa_rugosa	Rorug02G0182300 Rorug02G0182400 Rorug02G0182500 Rorug02G0182600 Rorug07G0318700 Rorug07G0318800 Rorug07G0318900 Rorug07G0319000 Rorug07G0319000
rosa_samantha	Rh2AG237000 Rh2BG249900 Rh2CG241000 Rh2DG244500 Rh7AG475000 Rh7AG475100 Rh7BG444900 Rh7BG445000 Rh7CG491200 Rh7CG491300 Rh7DG459500 Rh7DG459600
rosa_wichuraiana	Rw2G018330 Rw7G039500 Rw7G039520 Rw7G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	539, 563
AclWI	GGATC	2 cut(s)	262, 426
AcsI	RAATTY	1 cut(s)	833
AcuI	CTGAAG	3 cut(s)	317, 614, 975
AfaI	GTAC	1 cut(s)	710
AfiI	CCNNNNNNNGG	1 cut(s)	595
AflII	CTTAAG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	885
AgsI	TTSAA	3 cut(s)	76, 243, 583
AhdI	GACNNNNNGTC	1 cut(s)	342
AjnI	CCWGG	1 cut(s)	827
AjuI	GAANNNNNNNTTGG	4 cut(s)	372, 404, 948, 980
AluBI	AGCT	7 cut(s)	249, 268, 426, 595, 645, 655, 916
AluI	AGCT	7 cut(s)	249, 268, 426, 595, 645, 655, 916
Alw21I	GWGCWC	1 cut(s)	628
Alw26I	GTCTC	2 cut(s)	90, 944
Alw44I	GTGCAC	1 cut(s)	624
AlwI	GGATC	2 cut(s)	262, 426
Ama87I	CYCGRG	2 cut(s)	590, 650
AoxI	GGCC	5 cut(s)	149, 280, 549, 746, 971
ApaLI	GTGCAC	1 cut(s)	624
ApeKI	GCWGC	2 cut(s)	645, 913
ApoI	RAATTY	1 cut(s)	833
ArsI	GACNNNNNNTTYG	2 cut(s)	857, 889
AseI	ATTAAT	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	397
AspS9I	GGNCC	2 cut(s)	149, 746
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	908
AvaI	CYCGRG	2 cut(s)	590, 650
BaeGI	GKGCMC	1 cut(s)	628
BbsI	GAAGAC	1 cut(s)	910
Bbv12I	GWGCWC	1 cut(s)	628
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	632, 925
BccI	CCATC	3 cut(s)	887, 893, 985
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BciT130I	CCWGG	1 cut(s)	829
BcnI	CCSGG	1 cut(s)	200
BcoDI	GTCTC	2 cut(s)	90, 944
BfaI	CTAG	1 cut(s)	576
BfrI	CTTAAG	1 cut(s)	89
BglI	GCCNNNNNGGC	1 cut(s)	563
BisI	GCNGC	3 cut(s)	564, 646, 914
BlsI	GCNGC	3 cut(s)	565, 647, 915
BmcAI	AGTACT	1 cut(s)	710
Bme1390I	CCNGG	2 cut(s)	200, 829
BmeRI	GACNNNNNGTC	1 cut(s)	342
BmeT110I	CYCGRG	2 cut(s)	590, 650
BmgT120I	GGNCC	2 cut(s)	149, 746
BmiI	GGNNCC	2 cut(s)	150, 204
BmrFI	CCNGG	2 cut(s)	200, 829
BmsI	GCATC	5 cut(s)	46, 87, 185, 517, 796
BpiI	GAAGAC	1 cut(s)	910
BpmI	CTGGAG	1 cut(s)	929
Bpu10I	CCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	4 cut(s)	361, 623, 677, 938
BpuMI	CCSGG	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	828
BsaWI	WCCGGW	1 cut(s)	511
Bsc4I	CCNNNNNNNGG	1 cut(s)	595
Bse1I	ACTGG	1 cut(s)	912
Bse3DI	GCAATG	3 cut(s)	41, 309, 558
BseBI	CCWGG	1 cut(s)	829
BseDI	CCNNGG	1 cut(s)	828
BseGI	GGATG	6 cut(s)	508, 547, 683, 790, 847, 898
BseLI	CCNNNNNNNGG	1 cut(s)	595
BseMI	GCAATG	3 cut(s)	41, 309, 558
BseMII	CTCAG	2 cut(s)	221, 274
BseNI	ACTGG	1 cut(s)	912
BseSI	GKGCMC	1 cut(s)	628
BseXI	GCAGC	2 cut(s)	632, 925
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	5 cut(s)	151, 282, 551, 748, 973
BsiEI	CGRYCG	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	628
BsiHKCI	CYCGRG	2 cut(s)	590, 650
BsiSI	CCGG	2 cut(s)	200, 512
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	595
BsmAI	GTCTC	2 cut(s)	90, 944
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	5 cut(s)	151, 282, 551, 748, 973
BsoBI	CYCGRG	2 cut(s)	590, 650
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp143I	GATC	5 cut(s)	217, 254, 297, 418, 438
BspACI	CCGC	2 cut(s)	539, 563
BspANI	GGCC	5 cut(s)	151, 282, 551, 748, 973
BspCNI	CTCAG	2 cut(s)	220, 273
BspLI	GGNNCC	2 cut(s)	150, 204
BspPI	GGATC	2 cut(s)	262, 426
BspTI	CTTAAG	1 cut(s)	89
BsrDI	GCAATG	3 cut(s)	41, 309, 558
BsrI	ACTGG	1 cut(s)	912
BssECI	CCNNGG	1 cut(s)	828
BssMI	GATC	5 cut(s)	217, 254, 297, 418, 438
Bst2UI	CCWGG	1 cut(s)	829
Bst4CI	ACNGT	4 cut(s)	106, 431, 476, 523
BstAFI	CTTAAG	1 cut(s)	89
BstC8I	GCNNGC	4 cut(s)	161, 530, 597, 617
BstDEI	CTNAG	4 cut(s)	207, 260, 422, 712
BstF5I	GGATG	6 cut(s)	508, 547, 683, 790, 847, 898
BstKTI	GATC	5 cut(s)	220, 257, 300, 421, 441
BstMAI	GTCTC	2 cut(s)	90, 944
BstMBI	GATC	5 cut(s)	217, 254, 297, 418, 438
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 563, 592
BstNI	CCWGG	1 cut(s)	829
BstNSI	RCATGY	3 cut(s)	508, 532, 889
BstSCI	CCNGG	2 cut(s)	198, 827
BstSLI	GKGCMC	1 cut(s)	628
BstV1I	GCAGC	2 cut(s)	632, 925
BstV2I	GAAGAC	1 cut(s)	910
BstX2I	RGATCY	2 cut(s)	254, 418
BstYI	RGATCY	2 cut(s)	254, 418
BsuRI	GGCC	5 cut(s)	151, 282, 551, 748, 973
BtsCI	GGATG	6 cut(s)	508, 547, 683, 790, 847, 898
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	4 cut(s)	161, 530, 597, 617
Cfr13I	GGNCC	2 cut(s)	149, 746
Csp6I	GTAC	1 cut(s)	709
CviAII	CATG	7 cut(s)	129, 295, 505, 529, 605, 886, 947
CviQI	GTAC	1 cut(s)	709
DdeI	CTNAG	4 cut(s)	207, 260, 422, 712
DpnI	GATC	5 cut(s)	219, 256, 299, 420, 440
DpnII	GATC	5 cut(s)	217, 254, 297, 418, 438
DriI	GACNNNNNGTC	1 cut(s)	342
Eam1105I	GACNNNNNGTC	1 cut(s)	342
Eco147I	AGGCCT	1 cut(s)	282
Eco57I	CTGAAG	3 cut(s)	317, 614, 975
Eco88I	CYCGRG	2 cut(s)	590, 650
EcoO109I	RGGNCCY	2 cut(s)	149, 746
EcoRII	CCWGG	1 cut(s)	827
EcoT22I	ATGCAT	2 cut(s)	61, 510
FaeI	CATG	7 cut(s)	132, 298, 508, 532, 608, 889, 950
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	7 cut(s)	128, 294, 504, 528, 604, 885, 946
Fnu4HI	GCNGC	3 cut(s)	564, 646, 914
FokI	GGATG	6 cut(s)	495, 554, 690, 797, 854, 905
Fsp4HI	GCNGC	3 cut(s)	564, 646, 914
FspBI	CTAG	1 cut(s)	576
GluI	GCNGC	3 cut(s)	564, 646, 914
GsuI	CTGGAG	1 cut(s)	929
HaeIII	GGCC	5 cut(s)	151, 282, 551, 748, 973
HapII	CCGG	2 cut(s)	200, 512
Hin1II	CATG	7 cut(s)	132, 298, 508, 532, 608, 889, 950
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	3 cut(s)	109, 343, 368
HpaII	CCGG	2 cut(s)	200, 512
HphI	GGTGA	1 cut(s)	908
Hpy166II	GTNNAC	1 cut(s)	626
Hpy188I	TCNGA	7 cut(s)	263, 336, 501, 633, 729, 805, 817
Hpy188III	TCNNGA	2 cut(s)	243, 640
Hpy8I	GTNNAC	1 cut(s)	626
HpyAV	CCTTC	5 cut(s)	316, 341, 387, 730, 950
HpyCH4III	ACNGT	4 cut(s)	106, 431, 476, 523
HpyCH4V	TGCA	4 cut(s)	59, 123, 508, 626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 563, 592
HpyF3I	CTNAG	4 cut(s)	207, 260, 422, 712
Hsp92II	CATG	7 cut(s)	132, 298, 508, 532, 608, 889, 950
Kzo9I	GATC	5 cut(s)	217, 254, 297, 418, 438
LmnI	GCTCC	1 cut(s)	910
LpnPI	CCDG	9 cut(s)	95, 145, 213, 264, 525, 581, 814, 841, 893
Lsp1109I	GCAGC	2 cut(s)	632, 925
LweI	GCATC	5 cut(s)	46, 87, 185, 517, 796
MaeI	CTAG	1 cut(s)	576
MalI	GATC	5 cut(s)	219, 256, 299, 420, 440
MboI	GATC	5 cut(s)	217, 254, 297, 418, 438
MboII	GAAGA	8 cut(s)	64, 292, 448, 730, 804, 863, 881, 915
MflI	RGATCY	2 cut(s)	254, 418
MhlI	GDGCHC	1 cut(s)	628
MluCI	AATT	4 cut(s)	44, 325, 479, 833
MlyI	GAGTC	1 cut(s)	352
MmeI	TCCRAC	1 cut(s)	645
Mph1103I	ATGCAT	2 cut(s)	61, 510
MroXI	GAANNNNTTC	1 cut(s)	397
MseI	TTAA	4 cut(s)	47, 90, 690, 985
MspCI	CTTAAG	1 cut(s)	89
MspI	CCGG	2 cut(s)	200, 512
MspR9I	CCNGG	2 cut(s)	200, 829
MvaI	CCWGG	1 cut(s)	829
MwoI	GCNNNNNNNGC	3 cut(s)	17, 563, 592
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	5 cut(s)	217, 254, 297, 418, 438
NlaIII	CATG	7 cut(s)	132, 298, 508, 532, 608, 889, 950
NlaIV	GGNNCC	2 cut(s)	150, 204
NsiI	ATGCAT	2 cut(s)	61, 510
NspI	RCATGY	3 cut(s)	508, 532, 889
PaeI	GCATGC	1 cut(s)	532
PaeR7I	CTCGAG	1 cut(s)	590
PceI	AGGCCT	1 cut(s)	282
PciI	ACATGT	1 cut(s)	885
PdmI	GAANNNNTTC	1 cut(s)	397
PfeI	GAWTC	2 cut(s)	109, 368
PkrI	GCNGC	3 cut(s)	565, 647, 915
Ple19I	CGATCG	1 cut(s)	220
PleI	GAGTC	1 cut(s)	351
PpsI	GAGTC	1 cut(s)	351
PscI	ACATGT	1 cut(s)	885
PshBI	ATTAAT	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	827
PspGI	CCWGG	1 cut(s)	827
PspN4I	GGNNCC	2 cut(s)	150, 204
PspPI	GGNCC	2 cut(s)	149, 746
PspXI	VCTCGAGB	1 cut(s)	590
PsuI	RGATCY	2 cut(s)	254, 418
PvuI	CGATCG	1 cut(s)	220
RsaI	GTAC	1 cut(s)	710
RsaNI	GTAC	1 cut(s)	709
SaqAI	TTAA	4 cut(s)	47, 90, 690, 985
SatI	GCNGC	3 cut(s)	564, 646, 914
Sau3AI	GATC	5 cut(s)	217, 254, 297, 418, 438
Sau96I	GGNCC	2 cut(s)	149, 746
ScaI	AGTACT	1 cut(s)	710
SchI	GAGTC	1 cut(s)	352
ScrFI	CCNGG	2 cut(s)	200, 829
SduI	GDGCHC	1 cut(s)	628
SfaNI	GCATC	5 cut(s)	46, 87, 185, 517, 796
Sfr274I	CTCGAG	1 cut(s)	590
SlaI	CTCGAG	1 cut(s)	590
SmlI	CTYRAG	6 cut(s)	89, 340, 590, 638, 656, 917
SmoI	CTYRAG	6 cut(s)	89, 340, 590, 638, 656, 917
SphI	GCATGC	1 cut(s)	532
Sse9I	AATT	4 cut(s)	44, 325, 479, 833
SseBI	AGGCCT	1 cut(s)	282
SsiI	CCGC	2 cut(s)	539, 563
SspMI	CTAG	1 cut(s)	576
StuI	AGGCCT	1 cut(s)	282
StyD4I	CCNGG	2 cut(s)	198, 827
TaaI	ACNGT	4 cut(s)	106, 431, 476, 523
TaqI	TCGA	3 cut(s)	216, 371, 591
TasI	AATT	4 cut(s)	44, 325, 479, 833
TatI	WGTACW	1 cut(s)	708
TauI	GCSGC	1 cut(s)	566
TfiI	GAWTC	2 cut(s)	109, 368
Tru1I	TTAA	4 cut(s)	47, 90, 690, 985
Tru9I	TTAA	4 cut(s)	47, 90, 690, 985
TscAI	CASTG	1 cut(s)	111
TseI	GCWGC	2 cut(s)	645, 913
TspDTI	ATGAA	3 cut(s)	298, 717, 864
TspRI	CASTG	1 cut(s)	111
Vha464I	CTTAAG	1 cut(s)	89
VneI	GTGCAC	1 cut(s)	624
VspI	ATTAAT	1 cut(s)	47
XapI	RAATTY	1 cut(s)	833
XceI	RCATGY	3 cut(s)	508, 532, 889
XhoI	CTCGAG	1 cut(s)	590
XmnI	GAANNNNTTC	1 cut(s)	397
XspI	CTAG	1 cut(s)	576
ZrmI	AGTACT	1 cut(s)	710
Zsp2I	ATGCAT	2 cut(s)	61, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.