Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000713

Physical Location & Seq

Genomic Coordinates Forward (+)

6565136 .. 6566124

Gene Structure 989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000850

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGGGTCTGACTGCTGGCAAGAGATAGACATTGAGGAATGGAGTAATGAATGCCAGCCGCAACACCTTGATCGCATGATTCAAATGCTGGTGGCAAGAAGTTGTGGATCAATGAGAAAGCTGTGTGTTTCCGAACTCCAAAACGACCTGATTTTCACCTTCATTGCTGAACATGCTAATACCCTTCAGACCTTGAGACTGCGAAGAAGTCAAATGAGTGATTCAGTGGTAGAACAGACAATTGGAAGGTTTTCTAATATCACCTTCTTGGATCTTAGCTACTGTGGTAAAATTGGTAGTCGCGCTCTAAAGGCCATCGGAATGAACTGTAAATTGCTCATGGGACTGTGCCGGAATAGATATCCAGGGTACACGGCAGGCATCCTTATGAATAATGAGGCTCATGCCATTGCCACCACAATGCCTAGACTGAAGCACCTTGATCGCTGCCCTGAGCTCGAATTTTTGGATTTGACAGGATGTTGGGATGTTCAGCTTGATGATAAGTTCCTAGGGGAGAAGTTCCCAAAGTTGAAGGTTCTAGGGCCTCCTGCGGACTACTACTATGATGAGGACTTGGAATGTTGCATGAATAACTCCGATGCTTCTTCTGACGGTTCCCCCTTCGAATATGAGGATCTATCTGAGGAATATCTGTCCGATGAATATGTGTCTGACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

F-box F-box-like LRR_6 Laminin_G_3

Protein Analysis

228

Amino Acids

25.98

Weight (kDa)

4.63

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08980 AT4G08980 AT4G08980 AT4G08980 AT4G08980
fragaria_vesca	FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36840 FvH4_5g36840 FvH4_5g36840
malus_domestica	MD01G1033400.v1.1 MD08G1186500.v1.1 MD15G1372500.v1.1
prunus_persica	Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1
pyrus_communis	pycom01g06090 pycom08g16030 pycom15g33350
rosa_chinensis	RchiOBHm_Chr2g0112771 RchiOBHm_Chr7g0243381 RchiOBHm_Chr7g0243391
rosa_laevigata	RLG00000000850 RLG00000000851 RLG00000018008
rosa_multiflora	Rmu_co8087500.1_g000001 Rmu_sc0001036.1_g000019 Rmu_sc0001036.1_g000027 Rmu_sc0001708.1_g000033 Rmu_sc0004612.1_g000003 Rmu_sc0024527.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131160 Rroxscaffold_3G00222130 Rroxscaffold_3G00222140
rosa_rugosa	Rorug02G0182300 Rorug02G0182400 Rorug02G0182500 Rorug02G0182600 Rorug07G0318700 Rorug07G0318800 Rorug07G0318900 Rorug07G0319000 Rorug07G0319000
rosa_samantha	Rh2AG237000 Rh2BG249900 Rh2CG241000 Rh2DG244500 Rh7AG475000 Rh7AG475100 Rh7BG444900 Rh7BG445000 Rh7CG491200 Rh7CG491300 Rh7DG459500 Rh7DG459600
rosa_wichuraiana	Rw2G018330 Rw7G039500 Rw7G039520 Rw7G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	303
AciI	CCGC	2 cut(s)	59, 554
AclWI	GGATC	3 cut(s)	115, 279, 645
AcsI	RAATTY	1 cut(s)	461
AcuI	CTGAAG	2 cut(s)	170, 452
AfaI	GTAC	1 cut(s)	371
AgsI	TTSAA	2 cut(s)	83, 535
AjnI	CCWGG	1 cut(s)	364
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AluBI	AGCT	4 cut(s)	121, 279, 457, 496
AluI	AGCT	4 cut(s)	121, 279, 457, 496
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	1 cut(s)	190
AlwI	GGATC	3 cut(s)	115, 279, 645
AoxI	GGCC	2 cut(s)	312, 545
ApeKI	GCWGC	1 cut(s)	447
ApoI	RAATTY	1 cut(s)	461
Asp700I	GAANNNNTTC	1 cut(s)	250
AspA2I	CCTAGG	1 cut(s)	511
AspLEI	GCGC	1 cut(s)	305
AspS9I	GGNCC	1 cut(s)	545
AsuHPI	GGTGA	2 cut(s)	148, 253
AsuII	TTCGAA	1 cut(s)	627
AvrII	CCTAGG	1 cut(s)	511
BanII	GRGCYC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	1 cut(s)	434
BccI	CCATC	1 cut(s)	323
BceAI	ACGGC	1 cut(s)	390
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BciT130I	CCWGG	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	3 cut(s)	426, 512, 542
BisI	GCNGC	2 cut(s)	59, 448
BlnI	CCTAGG	1 cut(s)	511
BlsI	GCNGC	2 cut(s)	60, 449
Bme1390I	CCNGG	1 cut(s)	366
BmgT120I	GGNCC	1 cut(s)	545
BmiI	GGNNCC	1 cut(s)	619
BmrFI	CCNGG	1 cut(s)	366
BmsI	GCATC	2 cut(s)	390, 592
Bpu10I	CCTNAGC	1 cut(s)	453
Bpu14I	TTCGAA	1 cut(s)	627
BpuEI	CTTGAG	1 cut(s)	214
BsaJI	CCNNGG	2 cut(s)	365, 511
Bse3DI	GCAATG	2 cut(s)	162, 408
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	365, 511
BseGI	GGATG	3 cut(s)	381, 485, 493
BseMI	GCAATG	2 cut(s)	162, 408
BseMII	CTCAG	2 cut(s)	444, 636
BseXI	GCAGC	1 cut(s)	434
Bsh1236I	CGCG	1 cut(s)	303
BshFI	GGCC	2 cut(s)	314, 547
BsiHKAI	GWGCWC	1 cut(s)	459
BsiSI	CCGG	1 cut(s)	352
BslFI	GGGAC	1 cut(s)	357
BsmAI	GTCTC	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	357
BsmI	GAATGC	1 cut(s)	56
BsnI	GGCC	2 cut(s)	314, 547
Bsp119I	TTCGAA	1 cut(s)	627
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp143I	GATC	5 cut(s)	70, 107, 271, 442, 637
BspACI	CCGC	2 cut(s)	59, 554
BspANI	GGCC	2 cut(s)	314, 547
BspCNI	CTCAG	2 cut(s)	445, 637
BspFNI	CGCG	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	619
BspPI	GGATC	3 cut(s)	115, 279, 645
BspT104I	TTCGAA	1 cut(s)	627
BsrDI	GCAATG	2 cut(s)	162, 408
BssECI	CCNNGG	2 cut(s)	365, 511
BssMI	GATC	5 cut(s)	70, 107, 271, 442, 637
BssT1I	CCWWGG	1 cut(s)	511
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	4 cut(s)	284, 329, 348, 617
BstBI	TTCGAA	1 cut(s)	627
BstC8I	GCNNGC	3 cut(s)	17, 56, 379
BstDEI	CTNAG	3 cut(s)	275, 453, 645
BstF5I	GGATG	3 cut(s)	381, 485, 493
BstFNI	CGCG	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	5 cut(s)	73, 110, 274, 445, 640
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	5 cut(s)	70, 107, 271, 442, 637
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 311
BstNI	CCWGG	1 cut(s)	366
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	364
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	434
BstX2I	RGATCY	2 cut(s)	271, 637
BstYI	RGATCY	2 cut(s)	271, 637
BsuRI	GGCC	2 cut(s)	314, 547
BtsCI	GGATG	3 cut(s)	381, 485, 493
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	3 cut(s)	17, 56, 379
CfoI	GCGC	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	545
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	5 cut(s)	76, 173, 340, 404, 589
CviJI	RGCY	8 cut(s)	58, 121, 279, 314, 401, 457, 496, 547
CviKI_1	RGCY	8 cut(s)	58, 121, 279, 314, 401, 457, 496, 547
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	3 cut(s)	275, 453, 645
DpnI	GATC	5 cut(s)	72, 109, 273, 444, 639
DpnII	GATC	5 cut(s)	70, 107, 271, 442, 637
Ecl136II	GAGCTC	1 cut(s)	457
Eco130I	CCWWGG	1 cut(s)	511
Eco24I	GRGCYC	1 cut(s)	459
Eco32I	GATATC	1 cut(s)	362
Eco53kI	GAGCTC	1 cut(s)	457
Eco57I	CTGAAG	2 cut(s)	170, 452
EcoICRI	GAGCTC	1 cut(s)	457
EcoO109I	RGGNCCY	1 cut(s)	545
EcoRII	CCWGG	1 cut(s)	364
EcoRV	GATATC	1 cut(s)	362
EcoT14I	CCWWGG	1 cut(s)	511
EcoT38I	GRGCYC	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	511
FaeI	CATG	5 cut(s)	79, 176, 343, 407, 592
FaiI	YATR	9 cut(s)	77, 174, 341, 389, 405, 567, 590, 633, 669
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	5 cut(s)	75, 172, 339, 403, 588
Fnu4HI	GCNGC	2 cut(s)	59, 448
FokI	GGATG	3 cut(s)	368, 492, 500
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	2 cut(s)	59, 448
FspBI	CTAG	3 cut(s)	426, 512, 542
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	2 cut(s)	59, 448
HaeIII	GGCC	2 cut(s)	314, 547
HapII	CCGG	1 cut(s)	352
HhaI	GCGC	1 cut(s)	305
Hin1II	CATG	5 cut(s)	79, 176, 343, 407, 592
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HinfI	GANTC	2 cut(s)	79, 221
HpaII	CCGG	1 cut(s)	352
HphI	GGTGA	2 cut(s)	148, 253
Hpy166II	GTNNAC	1 cut(s)	372
Hpy188I	TCNGA	9 cut(s)	10, 133, 189, 320, 601, 613, 646, 661, 676
Hpy8I	GTNNAC	1 cut(s)	372
HpyAV	CCTTC	6 cut(s)	169, 194, 240, 274, 529, 634
HpyCH4III	ACNGT	4 cut(s)	284, 329, 348, 617
HpyCH4V	TGCA	1 cut(s)	588
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 311
HpyF3I	CTNAG	3 cut(s)	275, 453, 645
Hsp92II	CATG	5 cut(s)	79, 176, 343, 407, 592
HspAI	GCGC	1 cut(s)	303
Kzo9I	GATC	5 cut(s)	70, 107, 271, 442, 637
Lsp1109I	GCAGC	1 cut(s)	434
LweI	GCATC	2 cut(s)	390, 592
MaeI	CTAG	3 cut(s)	426, 512, 542
MalI	GATC	5 cut(s)	72, 109, 273, 444, 639
MboI	GATC	5 cut(s)	70, 107, 271, 442, 637
MboII	GAAGA	2 cut(s)	216, 600
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	2 cut(s)	271, 637
MhlI	GDGCHC	1 cut(s)	459
MluCI	AATT	4 cut(s)	240, 291, 332, 461
MnlI	CCTC	6 cut(s)	28, 391, 558, 565, 628, 640
MroXI	GAANNNNTTC	1 cut(s)	250
MslI	CAYNNNNRTG	3 cut(s)	320, 386, 419
MspI	CCGG	1 cut(s)	352
MspR9I	CCNGG	1 cut(s)	366
MunI	CAATTG	1 cut(s)	240
Mva1269I	GAATGC	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	366
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	2 cut(s)	173, 311
NdeII	GATC	5 cut(s)	70, 107, 271, 442, 637
NlaIII	CATG	5 cut(s)	79, 176, 343, 407, 592
NlaIV	GGNNCC	1 cut(s)	619
NspI	RCATGY	1 cut(s)	176
NspV	TTCGAA	1 cut(s)	627
PctI	GAATGC	1 cut(s)	56
PdmI	GAANNNNTTC	1 cut(s)	250
PfeI	GAWTC	2 cut(s)	79, 221
PkrI	GCNGC	2 cut(s)	60, 449
Psp124BI	GAGCTC	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	619
PspPI	GGNCC	1 cut(s)	545
PsuI	RGATCY	2 cut(s)	271, 637
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	3 cut(s)	320, 386, 419
SacI	GAGCTC	1 cut(s)	459
SatI	GCNGC	2 cut(s)	59, 448
Sau3AI	GATC	5 cut(s)	70, 107, 271, 442, 637
Sau96I	GGNCC	1 cut(s)	545
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	1 cut(s)	459
SfaNI	GCATC	2 cut(s)	390, 592
SfuI	TTCGAA	1 cut(s)	627
SmiMI	CAYNNNNRTG	3 cut(s)	320, 386, 419
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
Sse9I	AATT	4 cut(s)	240, 291, 332, 461
SsiI	CCGC	2 cut(s)	59, 554
SspMI	CTAG	3 cut(s)	426, 512, 542
SstI	GAGCTC	1 cut(s)	459
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	1 cut(s)	511
TaaI	ACNGT	4 cut(s)	284, 329, 348, 617
TaqI	TCGA	2 cut(s)	459, 627
TasI	AATT	4 cut(s)	240, 291, 332, 461
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	2 cut(s)	79, 221
TscAI	CASTG	1 cut(s)	231
TseI	GCWGC	1 cut(s)	447
TspDTI	ATGAA	6 cut(s)	63, 151, 338, 404, 605, 678
TspRI	CASTG	1 cut(s)	231
XapI	RAATTY	1 cut(s)	461
XceI	RCATGY	1 cut(s)	176
XmaJI	CCTAGG	1 cut(s)	511
XmnI	GAANNNNTTC	1 cut(s)	250
XspI	CTAG	3 cut(s)	426, 512, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.