Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000713

Physical Location & Seq

Genomic Coordinates Reverse (-)

69647930 .. 69650305

Gene Structure 2376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21812

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGAAATGGCAAGTGATTTTCGGCATTGGGATGAATTAATACCTGAGGCATTGAGTCTGATATTCAACAGCCTTTCTTTTAAGGAGAAGCTAACAGTGATTCCAATGGTTTGCAAACCATGGAGCAAGGCAGTTATGGGGTCTGACTGCTGGCAAGAGATAGACATTGAGGAATGGAGTAATGAATGCCAGCCGCAACACCTTGATCGCATGATTCAAATGCTGGTTGCAAGAAGTTGTGGATCAATGAGAAAGCTGTGTGTTTCCGAACTCCAAAACGACATGATTTTCTCCTTCATTGCTGAACATGCTAATACCCTTCAGACCTTGAGACTGCGAAGAAGTGAAATGAGTGATTCAGTGGTAGAACAGACAATTGGAAGGTTTTCTAATATCACCTTCTTGGATCTTAGCTACTGTGGTAAAATTGGTAGTCGTGCTCTAAAGGCCATCGGAATGAACTGTAAATTGCTCATGGGACTGTGCCGGAACATACATCCATCGTACTCTGCAGGCATCCATATGAATGATGAGGCTGATGCCATTGCCACCACAATGCCTAGACTGAAGCACCTTGAGATGGCATACCATATCATCAACACACAAGGGGCTCTTCAAATACTCGAAAGCTGCCCTGATCTTGAATTTTTGGATTTAAGAGGGTGTTGGGATGTTCAGCTTGATGATAAGTTCTTGGGGGAGAAGTTCCCAAAATTGAAGGTTCTAGGGCCTCCTGCGGACTACTACAATGATGAGGACTTGGAATGTTGCATGGATAACTCAGATGCTTCTTCTGACGGTTCCCCTTCGAATATGAGGATCTATCTGAGGAATATCTGTCCGACGAGTATTAGTCTGACAGATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

F-box F-box-like LRR_6 Laminin_G_3

Protein Analysis

289

Amino Acids

32.81

Weight (kDa)

4.91

Isoelectric Point (pI)

50.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08980 AT4G08980 AT4G08980 AT4G08980 AT4G08980
fragaria_vesca	FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36840 FvH4_5g36840 FvH4_5g36840
malus_domestica	MD01G1033400.v1.1 MD08G1186500.v1.1 MD15G1372500.v1.1
prunus_persica	Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1
pyrus_communis	pycom01g06090 pycom08g16030 pycom15g33350
rosa_chinensis	RchiOBHm_Chr2g0112771 RchiOBHm_Chr7g0243381 RchiOBHm_Chr7g0243391
rosa_laevigata	RLG00000000850 RLG00000000851 RLG00000018008
rosa_multiflora	Rmu_co8087500.1_g000001 Rmu_sc0001036.1_g000019 Rmu_sc0001036.1_g000027 Rmu_sc0001708.1_g000033 Rmu_sc0004612.1_g000003 Rmu_sc0024527.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131160 Rroxscaffold_3G00222130 Rroxscaffold_3G00222140
rosa_rugosa	Rorug02G0182300 Rorug02G0182400 Rorug02G0182500 Rorug02G0182600 Rorug07G0318700 Rorug07G0318800 Rorug07G0318900 Rorug07G0319000 Rorug07G0319000
rosa_samantha	Rh2AG237000 Rh2BG249900 Rh2CG241000 Rh2DG244500 Rh7AG475000 Rh7AG475100 Rh7BG444900 Rh7BG445000 Rh7CG491200 Rh7CG491300 Rh7DG459500 Rh7DG459600
rosa_wichuraiana	Rw2G018330 Rw7G039500 Rw7G039520 Rw7G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	194, 737
AclWI	GGATC	3 cut(s)	250, 414, 827
AcsI	RAATTY	1 cut(s)	644
AcuI	CTGAAG	2 cut(s)	305, 587
AfaI	GTAC	1 cut(s)	506
AfiI	CCNNNNNNNGG	1 cut(s)	580
AgsI	TTSAA	5 cut(s)	67, 218, 617, 644, 718
AjuI	GAANNNNNNNTTGG	2 cut(s)	360, 392
AluBI	AGCT	5 cut(s)	91, 256, 414, 630, 679
AluI	AGCT	5 cut(s)	91, 256, 414, 630, 679
Alw21I	GWGCWC	1 cut(s)	442
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	3 cut(s)	250, 414, 827
AoxI	GGCC	2 cut(s)	447, 728
ApeKI	GCWGC	1 cut(s)	630
ApoI	RAATTY	1 cut(s)	644
AseI	ATTAAT	1 cut(s)	38
Asp700I	GAANNNNTTC	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	728
AsuHPI	GGTGA	1 cut(s)	388
AsuII	TTCGAA	1 cut(s)	809
AxyI	CCTNAGG	1 cut(s)	45
BanII	GRGCYC	1 cut(s)	613
Bbv12I	GWGCWC	1 cut(s)	442
BbvI	GCAGC	1 cut(s)	617
BccI	CCATC	3 cut(s)	458, 508, 574
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	2 cut(s)	561, 725
BfmI	CTRYAG	1 cut(s)	510
BisI	GCNGC	2 cut(s)	194, 631
BlsI	GCNGC	2 cut(s)	195, 632
BmgT120I	GGNCC	1 cut(s)	728
BmiI	GGNNCC	1 cut(s)	802
BmsI	GCATC	3 cut(s)	525, 529, 775
Bpu14I	TTCGAA	1 cut(s)	809
BpuEI	CTTGAG	2 cut(s)	349, 596
BsaJI	CCNNGG	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	1 cut(s)	580
Bse21I	CCTNAGG	1 cut(s)	45
Bse3DI	GCAATG	2 cut(s)	297, 543
BseDI	CCNNGG	1 cut(s)	119
BseGI	GGATG	4 cut(s)	37, 496, 516, 676
BseLI	CCNNNNNNNGG	1 cut(s)	580
BseMI	GCAATG	2 cut(s)	297, 543
BseMII	CTCAG	3 cut(s)	36, 795, 818
BseXI	GCAGC	1 cut(s)	617
BshFI	GGCC	2 cut(s)	449, 730
BsiHKAI	GWGCWC	1 cut(s)	442
BsiSI	CCGG	1 cut(s)	487
BslFI	GGGAC	1 cut(s)	492
BslI	CCNNNNNNNGG	1 cut(s)	580
BsmAI	GTCTC	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	492
BsmI	GAATGC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	449, 730
Bsp119I	TTCGAA	1 cut(s)	809
Bsp1286I	GDGCHC	2 cut(s)	442, 613
Bsp143I	GATC	5 cut(s)	205, 242, 406, 637, 819
Bsp19I	CCATGG	1 cut(s)	119
BspACI	CCGC	2 cut(s)	194, 737
BspANI	GGCC	2 cut(s)	449, 730
BspCNI	CTCAG	3 cut(s)	37, 794, 819
BspLI	GGNNCC	1 cut(s)	802
BspMAI	CTGCAG	1 cut(s)	514
BspPI	GGATC	3 cut(s)	250, 414, 827
BspQI	GCTCTTC	1 cut(s)	618
BspT104I	TTCGAA	1 cut(s)	809
BsrDI	GCAATG	2 cut(s)	297, 543
BssECI	CCNNGG	1 cut(s)	119
BssMI	GATC	5 cut(s)	205, 242, 406, 637, 819
BssT1I	CCWWGG	1 cut(s)	119
Bst4CI	ACNGT	5 cut(s)	97, 419, 464, 483, 800
Bst6I	CTCTTC	1 cut(s)	618
BstBI	TTCGAA	1 cut(s)	809
BstC8I	GCNNGC	3 cut(s)	152, 191, 514
BstDEI	CTNAG	4 cut(s)	45, 410, 781, 827
BstDSI	CCRYGG	1 cut(s)	119
BstF5I	GGATG	4 cut(s)	37, 496, 516, 676
BstKTI	GATC	5 cut(s)	208, 245, 409, 640, 822
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	5 cut(s)	205, 242, 406, 637, 819
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 446
BstNSI	RCATGY	1 cut(s)	311
BstSFI	CTRYAG	1 cut(s)	510
BstV1I	GCAGC	1 cut(s)	617
BstX2I	RGATCY	2 cut(s)	406, 819
BstYI	RGATCY	2 cut(s)	406, 819
Bsu36I	CCTNAGG	1 cut(s)	45
BsuRI	GGCC	2 cut(s)	449, 730
BtgI	CCRYGG	1 cut(s)	119
BtsCI	GGATG	4 cut(s)	37, 496, 516, 676
BtsIMutI	CAGTG	2 cut(s)	102, 366
Cac8I	GCNNGC	3 cut(s)	152, 191, 514
Cfr13I	GGNCC	1 cut(s)	728
Csp6I	GTAC	1 cut(s)	505
CviAII	CATG	6 cut(s)	120, 211, 283, 308, 475, 772
CviQI	GTAC	1 cut(s)	505
DdeI	CTNAG	4 cut(s)	45, 410, 781, 827
DpnI	GATC	5 cut(s)	207, 244, 408, 639, 821
DpnII	GATC	5 cut(s)	205, 242, 406, 637, 819
Eam1104I	CTCTTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	618
Eco130I	CCWWGG	1 cut(s)	119
Eco24I	GRGCYC	1 cut(s)	613
Eco57I	CTGAAG	2 cut(s)	305, 587
Eco81I	CCTNAGG	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	728
EcoT14I	CCWWGG	1 cut(s)	119
EcoT38I	GRGCYC	1 cut(s)	613
ErhI	CCWWGG	1 cut(s)	119
FaeI	CATG	6 cut(s)	123, 214, 286, 311, 478, 775
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FaqI	GGGAC	1 cut(s)	492
FatI	CATG	6 cut(s)	119, 210, 282, 307, 474, 771
FauNDI	CATATG	1 cut(s)	522
Fnu4HI	GCNGC	2 cut(s)	194, 631
FokI	GGATG	4 cut(s)	44, 483, 503, 683
FriOI	GRGCYC	1 cut(s)	613
Fsp4HI	GCNGC	2 cut(s)	194, 631
FspBI	CTAG	2 cut(s)	561, 725
GluI	GCNGC	2 cut(s)	194, 631
HaeIII	GGCC	2 cut(s)	449, 730
HapII	CCGG	1 cut(s)	487
Hin1II	CATG	6 cut(s)	123, 214, 286, 311, 478, 775
HinfI	GANTC	4 cut(s)	55, 100, 214, 356
HpaII	CCGG	1 cut(s)	487
HphI	GGTGA	1 cut(s)	388
Hpy188III	TCNNGA	1 cut(s)	641
Hpy99I	CGWCG	1 cut(s)	847
HpyAV	CCTTC	6 cut(s)	304, 329, 375, 409, 712, 816
HpyCH4III	ACNGT	5 cut(s)	97, 419, 464, 483, 800
HpyCH4V	TGCA	4 cut(s)	114, 230, 512, 771
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 446
HpyF3I	CTNAG	4 cut(s)	45, 410, 781, 827
Hsp92II	CATG	6 cut(s)	123, 214, 286, 311, 478, 775
Kzo9I	GATC	5 cut(s)	205, 242, 406, 637, 819
LguI	GCTCTTC	1 cut(s)	618
LmnI	GCTCC	1 cut(s)	123
LpnPI	CCDG	8 cut(s)	57, 136, 203, 209, 498, 500, 648, 747
Lsp1109I	GCAGC	1 cut(s)	617
LweI	GCATC	3 cut(s)	525, 529, 775
MaeI	CTAG	2 cut(s)	561, 725
MalI	GATC	5 cut(s)	207, 244, 408, 639, 821
MboI	GATC	5 cut(s)	205, 242, 406, 637, 819
MboII	GAAGA	3 cut(s)	351, 605, 783
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	2 cut(s)	406, 819
MhlI	GDGCHC	2 cut(s)	442, 613
MluCI	AATT	6 cut(s)	35, 375, 426, 467, 644, 713
MlyI	GAGTC	1 cut(s)	64
MmeI	TCCRAC	1 cut(s)	866
MnlI	CCTC	8 cut(s)	40, 163, 526, 653, 741, 748, 810, 822
MroXI	GAANNNNTTC	1 cut(s)	385
MseI	TTAA	3 cut(s)	38, 81, 656
MslI	CAYNNNNRTG	5 cut(s)	30, 455, 521, 525, 554
MspI	CCGG	1 cut(s)	487
MunI	CAATTG	1 cut(s)	375
Mva1269I	GAATGC	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	308, 446
NcoI	CCATGG	1 cut(s)	119
NdeI	CATATG	1 cut(s)	522
NdeII	GATC	5 cut(s)	205, 242, 406, 637, 819
NlaIII	CATG	6 cut(s)	123, 214, 286, 311, 478, 775
NlaIV	GGNNCC	1 cut(s)	802
NspI	RCATGY	1 cut(s)	311
NspV	TTCGAA	1 cut(s)	809
PciSI	GCTCTTC	1 cut(s)	618
PctI	GAATGC	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	385
PfeI	GAWTC	3 cut(s)	100, 214, 356
PkrI	GCNGC	2 cut(s)	195, 632
PleI	GAGTC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	63
PshBI	ATTAAT	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	802
PspPI	GGNCC	1 cut(s)	728
PstI	CTGCAG	1 cut(s)	514
PsuI	RGATCY	2 cut(s)	406, 819
RsaI	GTAC	1 cut(s)	506
RsaNI	GTAC	1 cut(s)	505
RseI	CAYNNNNRTG	5 cut(s)	30, 455, 521, 525, 554
SapI	GCTCTTC	1 cut(s)	618
SaqAI	TTAA	3 cut(s)	38, 81, 656
SatI	GCNGC	2 cut(s)	194, 631
Sau3AI	GATC	5 cut(s)	205, 242, 406, 637, 819
Sau96I	GGNCC	1 cut(s)	728
SchI	GAGTC	1 cut(s)	64
SduI	GDGCHC	2 cut(s)	442, 613
SfaNI	GCATC	3 cut(s)	525, 529, 775
SfcI	CTRYAG	1 cut(s)	510
SfuI	TTCGAA	1 cut(s)	809
SmiMI	CAYNNNNRTG	5 cut(s)	30, 455, 521, 525, 554
SmlI	CTYRAG	2 cut(s)	328, 575
SmoI	CTYRAG	2 cut(s)	328, 575
Sse9I	AATT	6 cut(s)	35, 375, 426, 467, 644, 713
SsiI	CCGC	2 cut(s)	194, 737
SspMI	CTAG	2 cut(s)	561, 725
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	5 cut(s)	97, 419, 464, 483, 800
TaqI	TCGA	2 cut(s)	624, 809
TasI	AATT	6 cut(s)	35, 375, 426, 467, 644, 713
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	3 cut(s)	100, 214, 356
Tru1I	TTAA	3 cut(s)	38, 81, 656
Tru9I	TTAA	3 cut(s)	38, 81, 656
TscAI	CASTG	2 cut(s)	102, 366
TseI	GCWGC	1 cut(s)	630
TspDTI	ATGAA	5 cut(s)	48, 198, 286, 473, 539
TspRI	CASTG	2 cut(s)	102, 366
VspI	ATTAAT	1 cut(s)	38
XapI	RAATTY	1 cut(s)	644
XceI	RCATGY	1 cut(s)	311
XmnI	GAANNNNTTC	1 cut(s)	385
XspI	CTAG	2 cut(s)	561, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.