Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000713

Physical Location & Seq

Genomic Coordinates Forward (+)

5119988 .. 5135795

Gene Structure 15808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00222130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGAAATGGCAAGTGATTTTCGGCATTGGGATGATTTAATACCTGAGGCATTGAGTCTGATATTCAACAGCCTTTCTTTTAAGGACAAGCTAACAGTGATTCCAATGGTTTGCAAACCATGGAGCAAGGCAGTTATGGGGTCTGATTGCTGGCAAGAGATAGACATTGAGGAATGGAGTAATGAATGCCAGCCGCAACGCCTTGATCGCATGATTCAAATGCTGGTGGCAAGAAGTTGTGGATCAATGAGAAAGCTGTGTGTTTCCGAACTCCAAAACGACATGATTTTCACCTTCATTGCTGAACATGCTAATACCCTTCAGACCTTGAGACTGCGAAGAAGTCAAATGAGTGCTTCAGTGGTAGAACAGACAATTGGAAGGTTTTCTAATATCACCTTCTTGGATCTTAGCTACTGTGGTAAAATTGGTAGTCGTGCTCTAAAGGCCATCGGAGTGAACTGTAAATTGCTCATGGGACTGTGCCGGAACAGATATCCGGGGTACACGGCAGGCACCCTTATGAATAATGAGGCTCATGCCATTGCCACCACAATGCCTAGACTGAAGCACCTTGAGATGTCATACCATCTCATCAACACACAAGAGGCTCTTCAAATACTTGAGAGCTGCCCTGAGCTCGAATTTTTGGATTTGAGAGGATGTTGGGATGTTCAGCTTGATGATAAGTTCTTAGGGGAGAAGTTCCCAAAATTGAAGGTTCTAGGGCCTCCTGCGGACTACTACTATGATGAGGACTTGGAATGTTGCATGGATAACTCAGATGCTTCTTCTGACGGTTTCCCCTTCGGATATGAGGATCTATCTGAGGAATATCTGTCCGATGACTATTTGACATTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04931 map04931

Pfam Domains

Protein Families

F-box F-box-like LRR_6 Laminin_G_3

Protein Analysis

288

Amino Acids

33.0

Weight (kDa)

4.7

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08980 AT4G08980 AT4G08980 AT4G08980 AT4G08980
fragaria_vesca	FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36840 FvH4_5g36840 FvH4_5g36840
malus_domestica	MD01G1033400.v1.1 MD08G1186500.v1.1 MD15G1372500.v1.1
prunus_persica	Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1
pyrus_communis	pycom01g06090 pycom08g16030 pycom15g33350
rosa_chinensis	RchiOBHm_Chr2g0112771 RchiOBHm_Chr7g0243381 RchiOBHm_Chr7g0243391
rosa_laevigata	RLG00000000850 RLG00000000851 RLG00000018008
rosa_multiflora	Rmu_co8087500.1_g000001 Rmu_sc0001036.1_g000019 Rmu_sc0001036.1_g000027 Rmu_sc0001708.1_g000033 Rmu_sc0004612.1_g000003 Rmu_sc0024527.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131160 Rroxscaffold_3G00222130 Rroxscaffold_3G00222140
rosa_rugosa	Rorug02G0182300 Rorug02G0182400 Rorug02G0182500 Rorug02G0182600 Rorug07G0318700 Rorug07G0318800 Rorug07G0318900 Rorug07G0319000 Rorug07G0319000
rosa_samantha	Rh2AG237000 Rh2BG249900 Rh2CG241000 Rh2DG244500 Rh7AG475000 Rh7AG475100 Rh7BG444900 Rh7BG445000 Rh7CG491200 Rh7CG491300 Rh7DG459500 Rh7DG459600
rosa_wichuraiana	Rw2G018330 Rw7G039500 Rw7G039520 Rw7G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	515
AciI	CCGC	2 cut(s)	194, 737
AclWI	GGATC	3 cut(s)	250, 414, 828
AcsI	RAATTY	1 cut(s)	644
AcuI	CTGAAG	3 cut(s)	305, 342, 587
AfaI	GTAC	1 cut(s)	506
AgsI	TTSAA	4 cut(s)	67, 218, 617, 718
AjuI	GAANNNNNNNTTGG	2 cut(s)	360, 392
AluBI	AGCT	6 cut(s)	91, 256, 414, 630, 640, 679
AluI	AGCT	6 cut(s)	91, 256, 414, 630, 640, 679
Alw21I	GWGCWC	2 cut(s)	442, 642
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	3 cut(s)	250, 414, 828
AoxI	GGCC	2 cut(s)	447, 728
ApeKI	GCWGC	1 cut(s)	630
ApoI	RAATTY	1 cut(s)	644
Asp700I	GAANNNNTTC	1 cut(s)	385
AspS9I	GGNCC	1 cut(s)	728
AsuC2I	CCSGG	1 cut(s)	501
AsuHPI	GGTGA	2 cut(s)	283, 388
AxyI	CCTNAGG	1 cut(s)	45
BanI	GGYRCC	1 cut(s)	515
BanII	GRGCYC	1 cut(s)	642
Bbv12I	GWGCWC	2 cut(s)	442, 642
BbvI	GCAGC	1 cut(s)	617
BccI	CCATC	2 cut(s)	458, 597
BceAI	ACGGC	1 cut(s)	525
BcnI	CCSGG	1 cut(s)	501
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	2 cut(s)	561, 725
BisI	GCNGC	2 cut(s)	194, 631
BlsI	GCNGC	2 cut(s)	195, 632
Bme1390I	CCNGG	1 cut(s)	501
BmgT120I	GGNCC	1 cut(s)	728
BmiI	GGNNCC	1 cut(s)	517
BmrFI	CCNGG	1 cut(s)	501
BmsI	GCATC	1 cut(s)	775
Bpu10I	CCTNAGC	1 cut(s)	636
BpuEI	CTTGAG	3 cut(s)	349, 596, 644
BpuMI	CCSGG	1 cut(s)	501
BsaJI	CCNNGG	2 cut(s)	119, 500
Bse21I	CCTNAGG	1 cut(s)	45
Bse3DI	GCAATG	2 cut(s)	297, 543
BseDI	CCNNGG	2 cut(s)	119, 500
BseGI	GGATG	3 cut(s)	37, 668, 676
BseMI	GCAATG	2 cut(s)	297, 543
BseMII	CTCAG	4 cut(s)	36, 627, 795, 819
BseXI	GCAGC	1 cut(s)	617
BshFI	GGCC	2 cut(s)	449, 730
BshNI	GGYRCC	1 cut(s)	515
BsiHKAI	GWGCWC	2 cut(s)	442, 642
BsiSI	CCGG	2 cut(s)	487, 500
BslFI	GGGAC	1 cut(s)	492
BsmAI	GTCTC	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	492
BsmI	GAATGC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	449, 730
Bsp1286I	GDGCHC	2 cut(s)	442, 642
Bsp143I	GATC	4 cut(s)	205, 242, 406, 820
Bsp19I	CCATGG	1 cut(s)	119
BspACI	CCGC	2 cut(s)	194, 737
BspANI	GGCC	2 cut(s)	449, 730
BspCNI	CTCAG	4 cut(s)	37, 628, 794, 820
BspLI	GGNNCC	1 cut(s)	517
BspPI	GGATC	3 cut(s)	250, 414, 828
BspQI	GCTCTTC	1 cut(s)	618
BspT107I	GGYRCC	1 cut(s)	515
BsrDI	GCAATG	2 cut(s)	297, 543
BssECI	CCNNGG	2 cut(s)	119, 500
BssMI	GATC	4 cut(s)	205, 242, 406, 820
BssT1I	CCWWGG	1 cut(s)	119
Bst4CI	ACNGT	5 cut(s)	97, 419, 464, 483, 800
Bst6I	CTCTTC	1 cut(s)	618
BstC8I	GCNNGC	3 cut(s)	152, 191, 514
BstDEI	CTNAG	6 cut(s)	45, 410, 636, 694, 781, 828
BstDSI	CCRYGG	1 cut(s)	119
BstF5I	GGATG	3 cut(s)	37, 668, 676
BstKTI	GATC	4 cut(s)	208, 245, 409, 823
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	4 cut(s)	205, 242, 406, 820
BstMWI	GCNNNNNNNGC	3 cut(s)	207, 308, 446
BstNSI	RCATGY	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	499
BstV1I	GCAGC	1 cut(s)	617
BstX2I	RGATCY	2 cut(s)	406, 820
BstYI	RGATCY	2 cut(s)	406, 820
Bsu36I	CCTNAGG	1 cut(s)	45
BsuRI	GGCC	2 cut(s)	449, 730
BtgI	CCRYGG	1 cut(s)	119
BtsCI	GGATG	3 cut(s)	37, 668, 676
BtsIMutI	CAGTG	2 cut(s)	102, 366
Cac8I	GCNNGC	3 cut(s)	152, 191, 514
Cfr13I	GGNCC	1 cut(s)	728
Csp6I	GTAC	1 cut(s)	505
CviAII	CATG	7 cut(s)	120, 211, 283, 308, 475, 539, 772
CviQI	GTAC	1 cut(s)	505
DdeI	CTNAG	6 cut(s)	45, 410, 636, 694, 781, 828
DpnI	GATC	4 cut(s)	207, 244, 408, 822
DpnII	GATC	4 cut(s)	205, 242, 406, 820
Eam1104I	CTCTTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	618
Ecl136II	GAGCTC	1 cut(s)	640
Eco130I	CCWWGG	1 cut(s)	119
Eco24I	GRGCYC	1 cut(s)	642
Eco32I	GATATC	1 cut(s)	497
Eco53kI	GAGCTC	1 cut(s)	640
Eco57I	CTGAAG	3 cut(s)	305, 342, 587
Eco81I	CCTNAGG	1 cut(s)	45
EcoICRI	GAGCTC	1 cut(s)	640
EcoO109I	RGGNCCY	1 cut(s)	728
EcoRV	GATATC	1 cut(s)	497
EcoT14I	CCWWGG	1 cut(s)	119
EcoT38I	GRGCYC	1 cut(s)	642
ErhI	CCWWGG	1 cut(s)	119
FaeI	CATG	7 cut(s)	123, 214, 286, 311, 478, 542, 775
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FaqI	GGGAC	1 cut(s)	492
FatI	CATG	7 cut(s)	119, 210, 282, 307, 474, 538, 771
Fnu4HI	GCNGC	2 cut(s)	194, 631
FokI	GGATG	3 cut(s)	44, 675, 683
FriOI	GRGCYC	1 cut(s)	642
Fsp4HI	GCNGC	2 cut(s)	194, 631
FspBI	CTAG	2 cut(s)	561, 725
GluI	GCNGC	2 cut(s)	194, 631
HaeIII	GGCC	2 cut(s)	449, 730
HapII	CCGG	2 cut(s)	487, 500
Hin1II	CATG	7 cut(s)	123, 214, 286, 311, 478, 542, 775
HinfI	GANTC	3 cut(s)	55, 100, 214
HpaII	CCGG	2 cut(s)	487, 500
HphI	GGTGA	2 cut(s)	283, 388
Hpy166II	GTNNAC	2 cut(s)	460, 507
Hpy8I	GTNNAC	2 cut(s)	460, 507
HpyAV	CCTTC	6 cut(s)	304, 329, 375, 409, 712, 817
HpyCH4III	ACNGT	5 cut(s)	97, 419, 464, 483, 800
HpyCH4V	TGCA	2 cut(s)	114, 771
HpyF10VI	GCNNNNNNNGC	3 cut(s)	207, 308, 446
HpyF3I	CTNAG	6 cut(s)	45, 410, 636, 694, 781, 828
Hsp92II	CATG	7 cut(s)	123, 214, 286, 311, 478, 542, 775
Kzo9I	GATC	4 cut(s)	205, 242, 406, 820
LguI	GCTCTTC	1 cut(s)	618
LmnI	GCTCC	1 cut(s)	123
LpnPI	CCDG	9 cut(s)	57, 136, 203, 209, 498, 500, 513, 648, 747
Lsp1109I	GCAGC	1 cut(s)	617
LweI	GCATC	1 cut(s)	775
MaeI	CTAG	2 cut(s)	561, 725
MalI	GATC	4 cut(s)	207, 244, 408, 822
MboI	GATC	4 cut(s)	205, 242, 406, 820
MboII	GAAGA	3 cut(s)	351, 605, 783
MfeI	CAATTG	1 cut(s)	375
MflI	RGATCY	2 cut(s)	406, 820
MhlI	GDGCHC	2 cut(s)	442, 642
MluCI	AATT	5 cut(s)	375, 426, 467, 644, 713
MlyI	GAGTC	1 cut(s)	64
MnlI	CCTC	9 cut(s)	40, 163, 526, 601, 653, 741, 748, 811, 823
MroXI	GAANNNNTTC	1 cut(s)	385
MseI	TTAA	2 cut(s)	38, 81
MslI	CAYNNNNRTG	4 cut(s)	30, 455, 521, 554
MspI	CCGG	2 cut(s)	487, 500
MspR9I	CCNGG	1 cut(s)	501
MunI	CAATTG	1 cut(s)	375
Mva1269I	GAATGC	1 cut(s)	191
MwoI	GCNNNNNNNGC	3 cut(s)	207, 308, 446
NciI	CCSGG	1 cut(s)	501
NcoI	CCATGG	1 cut(s)	119
NdeII	GATC	4 cut(s)	205, 242, 406, 820
NlaIII	CATG	7 cut(s)	123, 214, 286, 311, 478, 542, 775
NlaIV	GGNNCC	1 cut(s)	517
NspI	RCATGY	1 cut(s)	311
PciSI	GCTCTTC	1 cut(s)	618
PctI	GAATGC	1 cut(s)	191
PdmI	GAANNNNTTC	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	100, 214
PkrI	GCNGC	2 cut(s)	195, 632
PleI	GAGTC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	63
Psp124BI	GAGCTC	1 cut(s)	642
PspN4I	GGNNCC	1 cut(s)	517
PspPI	GGNCC	1 cut(s)	728
PsuI	RGATCY	2 cut(s)	406, 820
RsaI	GTAC	1 cut(s)	506
RsaNI	GTAC	1 cut(s)	505
RseI	CAYNNNNRTG	4 cut(s)	30, 455, 521, 554
SacI	GAGCTC	1 cut(s)	642
SapI	GCTCTTC	1 cut(s)	618
SaqAI	TTAA	2 cut(s)	38, 81
SatI	GCNGC	2 cut(s)	194, 631
Sau3AI	GATC	4 cut(s)	205, 242, 406, 820
Sau96I	GGNCC	1 cut(s)	728
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	2 cut(s)	442, 642
SfaNI	GCATC	1 cut(s)	775
SmiMI	CAYNNNNRTG	4 cut(s)	30, 455, 521, 554
SmlI	CTYRAG	3 cut(s)	328, 575, 623
SmoI	CTYRAG	3 cut(s)	328, 575, 623
Sse9I	AATT	5 cut(s)	375, 426, 467, 644, 713
SsiI	CCGC	2 cut(s)	194, 737
SspMI	CTAG	2 cut(s)	561, 725
SstI	GAGCTC	1 cut(s)	642
StyD4I	CCNGG	1 cut(s)	499
StyI	CCWWGG	1 cut(s)	119
TaaI	ACNGT	5 cut(s)	97, 419, 464, 483, 800
TaqI	TCGA	1 cut(s)	642
TasI	AATT	5 cut(s)	375, 426, 467, 644, 713
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	2 cut(s)	100, 214
Tru1I	TTAA	2 cut(s)	38, 81
Tru9I	TTAA	2 cut(s)	38, 81
TscAI	CASTG	2 cut(s)	102, 366
TseI	GCWGC	1 cut(s)	630
TspDTI	ATGAA	3 cut(s)	198, 286, 539
TspRI	CASTG	2 cut(s)	102, 366
XapI	RAATTY	1 cut(s)	644
XceI	RCATGY	1 cut(s)	311
XmnI	GAANNNNTTC	1 cut(s)	385
XspI	CTAG	2 cut(s)	561, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.