Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0000713

Physical Location & Seq

Genomic Coordinates Forward (+)

15886513 .. 15887645

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g16030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGCTTGAAATGCTGATTGCTAGAAGCTGTGGATCGCTCCGAAAGCTCACAGTTTCCAGCCTCCAAAATGACAGGATCTTCTCCCATATTGCTGAGCATACTGGTTCCCTTCAGACCTTGAGACTGCCAAGAAGTGAAATTAGTGATTCTATAGTAGAAAAGACTGCTGGAAGGCTCTCTAATATCACTTTCCTGGATCTTAGCTACTGTGGCAAAATTGGTTTTCGTGCTTTAGAGGCCATCGGAAAGAACTGTAAAATGCTCGTAGCATTGTGTCGGAACATGCACCCATTGGATACAGCAGGCAAGCCTTTGCTGGATGACGAGGCTCGTGCCATTGCCACCACAATGCCAAGGCTTAAGCACCTTGAGATGGCATACCATCTTATCAGCACAGGCAGTGCTCTCCAAATACTCTCGAGCTGCCGCGAGCTCGAGTTCCTGGATTTGAGAGGGTGCTGGGATGTTAAACTTGAGGACAAGTTCCTGAAAGAGAAGTACCCAAAATTGAAGGTTTTGGGGCCTCTTGTTCTGGACTACTTTGAGAGGAATGAGTGGGAAGATTGCTCGGATTTCTCCGATGCTTCTGAGTATTTGGCGTGGGAATTCGTCGCTGGTGAATTGGAGGATTACTATGATGATGACGACGACGACGAGAGTTATGCCGAGATGTGGGATGATGAAGGCAGGCTGGAGCAGCTTGAGCTGAGGTTCTATGAAGGAATTGATCACCATGAAGATGCAGGAGGAGTTGGTTGGCCTCCATCTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048519 GO:0050789 GO:0050896 GO:0051603 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

258

Amino Acids

29.3

Weight (kDa)

4.66

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08980 AT4G08980 AT4G08980 AT4G08980 AT4G08980
fragaria_vesca	FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_1g20520 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36830 FvH4_5g36840 FvH4_5g36840 FvH4_5g36840
malus_domestica	MD01G1033400.v1.1 MD08G1186500.v1.1 MD15G1372500.v1.1
prunus_persica	Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.1G521100_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1 Prupe.6G190900_v2.0.a1
pyrus_communis	pycom01g06090 pycom08g16030 pycom15g33350
rosa_chinensis	RchiOBHm_Chr2g0112771 RchiOBHm_Chr7g0243381 RchiOBHm_Chr7g0243391
rosa_laevigata	RLG00000000850 RLG00000000851 RLG00000018008
rosa_multiflora	Rmu_co8087500.1_g000001 Rmu_sc0001036.1_g000019 Rmu_sc0001036.1_g000027 Rmu_sc0001708.1_g000033 Rmu_sc0004612.1_g000003 Rmu_sc0024527.1_g000001
rosa_roxburghii	Rroxscaffold_2G00131160 Rroxscaffold_3G00222130 Rroxscaffold_3G00222140
rosa_rugosa	Rorug02G0182300 Rorug02G0182400 Rorug02G0182500 Rorug02G0182600 Rorug07G0318700 Rorug07G0318800 Rorug07G0318900 Rorug07G0319000 Rorug07G0319000
rosa_samantha	Rh2AG237000 Rh2BG249900 Rh2CG241000 Rh2DG244500 Rh7AG475000 Rh7AG475100 Rh7BG444900 Rh7BG445000 Rh7CG491200 Rh7CG491300 Rh7DG459500 Rh7DG459600
rosa_wichuraiana	Rw2G018330 Rw7G039500 Rw7G039520 Rw7G039530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	429
AciI	CCGC	1 cut(s)	427
AclWI	GGATC	3 cut(s)	40, 83, 204
AcsI	RAATTY	1 cut(s)	605
AcuI	CTGAAG	1 cut(s)	95
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	2 cut(s)	373, 672
AflII	CTTAAG	1 cut(s)	359
AgsI	TTSAA	2 cut(s)	8, 511
AjnI	CCWGG	2 cut(s)	192, 441
AluBI	AGCT	7 cut(s)	27, 46, 204, 423, 433, 700, 706
AluI	AGCT	7 cut(s)	27, 46, 204, 423, 433, 700, 706
Alw21I	GWGCWC	2 cut(s)	406, 435
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	3 cut(s)	40, 83, 204
Ama87I	CYCGRG	2 cut(s)	418, 434
AoxI	GGCC	3 cut(s)	237, 521, 758
ApeKI	GCWGC	2 cut(s)	423, 697
ApoI	RAATTY	1 cut(s)	605
AspS9I	GGNCC	1 cut(s)	521
AsuHPI	GGTGA	2 cut(s)	629, 722
AvaI	CYCGRG	2 cut(s)	418, 434
BanII	GRGCYC	1 cut(s)	435
BauI	CACGAG	1 cut(s)	330
Bbv12I	GWGCWC	2 cut(s)	406, 435
BbvCI	CCTCAGC	1 cut(s)	707
BbvI	GCAGC	2 cut(s)	410, 709
BccI	CCATC	4 cut(s)	248, 367, 390, 772
BcgI	CGANNNNNNTGC	4 cut(s)	314, 348, 644, 678
BciT130I	CCWGG	2 cut(s)	194, 443
BciVI	GTATCC	1 cut(s)	289
BclI	TGATCA	1 cut(s)	727
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	150
BfrI	CTTAAG	1 cut(s)	359
BfuI	GTATCC	1 cut(s)	289
BisI	GCNGC	3 cut(s)	424, 427, 698
BlpI	GCTNAGC	1 cut(s)	93
BlsI	GCNGC	3 cut(s)	425, 428, 699
Bme1390I	CCNGG	2 cut(s)	194, 443
BmeT110I	CYCGRG	2 cut(s)	418, 434
BmgT120I	GGNCC	1 cut(s)	521
BmiI	GGNNCC	2 cut(s)	106, 522
BmrFI	CCNGG	2 cut(s)	194, 443
BmsI	GCATC	2 cut(s)	571, 730
BpmI	CTGGAG	1 cut(s)	713
Bpu10I	CCTNAGC	1 cut(s)	707
Bpu1102I	GCTNAGC	1 cut(s)	93
BpuEI	CTTGAG	4 cut(s)	139, 389, 494, 722
BsaJI	CCNNGG	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	2 cut(s)	373, 672
Bse1I	ACTGG	1 cut(s)	106
Bse3DI	GCAATG	1 cut(s)	336
BseBI	CCWGG	2 cut(s)	194, 443
BseDI	CCNNGG	1 cut(s)	353
BseGI	GGATG	3 cut(s)	325, 469, 682
BseLI	CCNNNNNNNGG	2 cut(s)	373, 672
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	3 cut(s)	84, 579, 698
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	1 cut(s)	762
BseXI	GCAGC	2 cut(s)	410, 709
BseYI	CCCAGC	1 cut(s)	459
Bsh1236I	CGCG	1 cut(s)	429
BshFI	GGCC	3 cut(s)	239, 523, 760
BsiHKAI	GWGCWC	2 cut(s)	406, 435
BsiHKCI	CYCGRG	2 cut(s)	418, 434
BslI	CCNNNNNNNGG	2 cut(s)	373, 672
BsmAI	GTCTC	1 cut(s)	115
BsnI	GGCC	3 cut(s)	239, 523, 760
BsoBI	CYCGRG	2 cut(s)	418, 434
Bsp1286I	GDGCHC	2 cut(s)	406, 435
Bsp143I	GATC	4 cut(s)	32, 75, 196, 727
Bsp1720I	GCTNAGC	1 cut(s)	93
BspACI	CCGC	1 cut(s)	427
BspANI	GGCC	3 cut(s)	239, 523, 760
BspCNI	CTCAG	3 cut(s)	85, 580, 699
BspFNI	CGCG	1 cut(s)	429
BspLI	GGNNCC	2 cut(s)	106, 522
BspPI	GGATC	3 cut(s)	40, 83, 204
BspTI	CTTAAG	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	106
BssECI	CCNNGG	1 cut(s)	353
BssMI	GATC	4 cut(s)	32, 75, 196, 727
BssSI	CACGAG	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	353
Bst2BI	CACGAG	1 cut(s)	330
Bst2UI	CCWGG	2 cut(s)	194, 443
Bst4CI	ACNGT	3 cut(s)	52, 209, 254
BstAFI	CTTAAG	1 cut(s)	359
BstC8I	GCNNGC	4 cut(s)	304, 308, 431, 689
BstDEI	CTNAG	5 cut(s)	93, 200, 588, 707, 771
BstF5I	GGATG	3 cut(s)	325, 469, 682
BstFNI	CGCG	1 cut(s)	429
BstKTI	GATC	4 cut(s)	35, 78, 199, 730
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	4 cut(s)	32, 75, 196, 727
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 43, 210, 236, 697, 703
BstNI	CCWGG	2 cut(s)	194, 443
BstNSI	RCATGY	1 cut(s)	286
BstSCI	CCNGG	2 cut(s)	192, 441
BstSFI	CTRYAG	1 cut(s)	150
BstUI	CGCG	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	410, 709
BstX2I	RGATCY	2 cut(s)	75, 196
BstYI	RGATCY	2 cut(s)	75, 196
BsuI	GTATCC	1 cut(s)	289
BsuRI	GGCC	3 cut(s)	239, 523, 760
BtsCI	GGATG	3 cut(s)	325, 469, 682
BtsI	GCAGTG	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	406
Cac8I	GCNNGC	4 cut(s)	304, 308, 431, 689
Cfr13I	GGNCC	1 cut(s)	521
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	2 cut(s)	283, 734
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	5 cut(s)	93, 200, 588, 707, 771
DpnI	GATC	4 cut(s)	34, 77, 198, 729
DpnII	GATC	4 cut(s)	32, 75, 196, 727
Ecl136II	GAGCTC	1 cut(s)	433
Eco130I	CCWWGG	1 cut(s)	353
Eco24I	GRGCYC	1 cut(s)	435
Eco53kI	GAGCTC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	95
Eco88I	CYCGRG	2 cut(s)	418, 434
EcoICRI	GAGCTC	1 cut(s)	433
EcoO109I	RGGNCCY	1 cut(s)	521
EcoRI	GAATTC	1 cut(s)	605
EcoRII	CCWGG	2 cut(s)	192, 441
EcoT14I	CCWWGG	1 cut(s)	353
EcoT38I	GRGCYC	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	353
FaeI	CATG	2 cut(s)	286, 737
FaiI	YATR	9 cut(s)	87, 99, 152, 284, 379, 636, 663, 717, 735
FatI	CATG	2 cut(s)	282, 733
FbaI	TGATCA	1 cut(s)	727
Fnu4HI	GCNGC	3 cut(s)	424, 427, 698
FokI	GGATG	3 cut(s)	332, 476, 689
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	3 cut(s)	424, 427, 698
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	3 cut(s)	424, 427, 698
GsaI	CCCAGC	1 cut(s)	463
GsuI	CTGGAG	1 cut(s)	713
HaeIII	GGCC	3 cut(s)	239, 523, 760
Hin1II	CATG	2 cut(s)	286, 737
HinfI	GANTC	1 cut(s)	146
HphI	GGTGA	2 cut(s)	629, 722
Hpy188I	TCNGA	7 cut(s)	41, 114, 245, 279, 571, 580, 589
Hpy188III	TCNNGA	3 cut(s)	418, 487, 533
Hpy99I	CGWCG	4 cut(s)	614, 650, 653, 656
HpyAV	CCTTC	5 cut(s)	119, 165, 505, 677, 713
HpyCH4III	ACNGT	3 cut(s)	52, 209, 254
HpyCH4V	TGCA	2 cut(s)	286, 743
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 43, 210, 236, 697, 703
HpyF3I	CTNAG	5 cut(s)	93, 200, 588, 707, 771
Hsp92II	CATG	2 cut(s)	286, 737
Ksp22I	TGATCA	1 cut(s)	727
Kzo9I	GATC	4 cut(s)	32, 75, 196, 727
LmnI	GCTCC	2 cut(s)	42, 694
Lsp1109I	GCAGC	2 cut(s)	410, 709
LweI	GCATC	2 cut(s)	571, 730
MaeI	CTAG	1 cut(s)	21
MalI	GATC	4 cut(s)	34, 77, 198, 729
MboI	GATC	4 cut(s)	32, 75, 196, 727
MboII	GAAGA	3 cut(s)	70, 572, 749
MflI	RGATCY	2 cut(s)	75, 196
MhlI	GDGCHC	2 cut(s)	406, 435
MluCI	AATT	6 cut(s)	138, 216, 506, 605, 620, 723
MmeI	TCCRAC	1 cut(s)	257
MseI	TTAA	2 cut(s)	360, 468
MslI	CAYNNNNRTG	2 cut(s)	347, 738
MspCI	CTTAAG	1 cut(s)	359
MspR9I	CCNGG	2 cut(s)	194, 443
MvaI	CCWGG	2 cut(s)	194, 443
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	6 cut(s)	10, 43, 210, 236, 697, 703
NdeII	GATC	4 cut(s)	32, 75, 196, 727
NlaIII	CATG	2 cut(s)	286, 737
NlaIV	GGNNCC	2 cut(s)	106, 522
NmeAIII	GCCGAG	1 cut(s)	691
NspI	RCATGY	1 cut(s)	286
PaeR7I	CTCGAG	2 cut(s)	418, 434
PcsI	WCGNNNNNNNCGW	1 cut(s)	651
PfeI	GAWTC	1 cut(s)	146
PfoI	TCCNGGA	2 cut(s)	192, 441
PkrI	GCNGC	3 cut(s)	425, 428, 699
Psp124BI	GAGCTC	1 cut(s)	435
Psp6I	CCWGG	2 cut(s)	192, 441
PspFI	CCCAGC	1 cut(s)	459
PspGI	CCWGG	2 cut(s)	192, 441
PspN4I	GGNNCC	2 cut(s)	106, 522
PspPI	GGNCC	1 cut(s)	521
PspXI	VCTCGAGB	1 cut(s)	434
PsuI	RGATCY	2 cut(s)	75, 196
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
RseI	CAYNNNNRTG	2 cut(s)	347, 738
SacI	GAGCTC	1 cut(s)	435
SaqAI	TTAA	2 cut(s)	360, 468
SatI	GCNGC	3 cut(s)	424, 427, 698
Sau3AI	GATC	4 cut(s)	32, 75, 196, 727
Sau96I	GGNCC	1 cut(s)	521
ScrFI	CCNGG	2 cut(s)	194, 443
SduI	GDGCHC	2 cut(s)	406, 435
SfaNI	GCATC	2 cut(s)	571, 730
SfcI	CTRYAG	1 cut(s)	150
Sfr274I	CTCGAG	2 cut(s)	418, 434
SlaI	CTCGAG	2 cut(s)	418, 434
SmiMI	CAYNNNNRTG	2 cut(s)	347, 738
SmlI	CTYRAG	7 cut(s)	118, 359, 368, 418, 434, 473, 701
SmoI	CTYRAG	7 cut(s)	118, 359, 368, 418, 434, 473, 701
Sse9I	AATT	6 cut(s)	138, 216, 506, 605, 620, 723
SsiI	CCGC	1 cut(s)	427
SspMI	CTAG	1 cut(s)	21
SstI	GAGCTC	1 cut(s)	435
StyD4I	CCNGG	2 cut(s)	192, 441
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	3 cut(s)	52, 209, 254
TaqI	TCGA	2 cut(s)	419, 435
TasI	AATT	6 cut(s)	138, 216, 506, 605, 620, 723
TauI	GCSGC	1 cut(s)	429
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	2 cut(s)	360, 468
Tru9I	TTAA	2 cut(s)	360, 468
TscAI	CASTG	1 cut(s)	406
TseI	GCWGC	2 cut(s)	423, 697
TspDTI	ATGAA	3 cut(s)	696, 732, 750
TspRI	CASTG	1 cut(s)	406
Vha464I	CTTAAG	1 cut(s)	359
XapI	RAATTY	1 cut(s)	605
XceI	RCATGY	1 cut(s)	286
XhoI	CTCGAG	2 cut(s)	418, 434
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.