Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Reverse (-)

13107136 .. 13108827

Gene Structure 1692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G25740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGATTGATGTACCAAACCTGCAAGTGATTAAGCTCATGCAGAGTTTCAAGTCCAAGGAGTACGTTAGGGAGACATTTGCGTGGATGCATTATTATTGGTTTCTGACTAATGAAGGAATTGAGTTCTTGAGAACTTATCTTAACCTTCCTTCCGATGTTGTCCCTGCTACTTTGAAGAAGTCTGCTAAGCCCGGTGGTCGTCCCTTTGGTGGCCCACCTGGTGATCGCCAAAGAGGACCACCTCGCTCTGATGGAGACCGTCCCAGATTTGGTGACCGTGATGGATACCGTGGAGGCCCACGTGGTGGTGATGAGAAGGGTGGAGCTCCAGCTGATTTCCAGCCGTCTTTCCAAGGAGGTGGTGGTAGGCCTGGTTTTGGCCGTGGTGCAGGCGGTTACAGTGCAGCAGCACCATCTGGTTCAGGGTTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0001763 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009653 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010252 GO:0010346 GO:0015935 GO:0016020 GO:0016043 GO:0022603 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030312 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042592 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048367 GO:0048507 GO:0048532 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0051239 GO:0060688 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0090506 GO:0097159 GO:1900618 GO:1901363 GO:1905393 GO:1905428 GO:1990904 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

S10_plectin

Protein Analysis

177

Amino Acids

19.45

Weight (kDa)

9.69

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S10_plectin	PF03501	3 - 94	1e-42	Plectin/S10 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	126
AccB7I	CCANNNNNTGG	1 cut(s)	404
AciI	CCGC	1 cut(s)	492
AcoI	YGGCCR	1 cut(s)	478
AcvI	CACGTG	1 cut(s)	401
AdeI	CACNNNGTG	2 cut(s)	320, 404
AfaI	GTAC	2 cut(s)	111, 161
AfiI	CCNNNNNNNGG	4 cut(s)	308, 368, 404, 476
AgsI	TTSAA	4 cut(s)	49, 82, 148, 274
AjnI	CCWGG	2 cut(s)	316, 469
AluBI	AGCT	3 cut(s)	133, 425, 431
AluI	AGCT	3 cut(s)	133, 425, 431
Alw21I	GWGCWC	1 cut(s)	427
Alw26I	GTCTC	2 cut(s)	164, 348
AoxI	GGCC	4 cut(s)	310, 394, 467, 478
ApeKI	GCWGC	2 cut(s)	503, 506
Asp700I	GAANNNNTTC	1 cut(s)	77
AspS9I	GGNCC	3 cut(s)	311, 335, 395
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	3 cut(s)	332, 383, 419
AvaII	GGWCC	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	427
BbrPI	CACGTG	1 cut(s)	401
Bbv12I	GWGCWC	1 cut(s)	427
BbvI	GCAGC	2 cut(s)	515, 518
BccI	CCATC	3 cut(s)	344, 374, 520
BceAI	ACGGC	2 cut(s)	427, 465
BciT130I	CCWGG	2 cut(s)	318, 471
BciVI	GTATCC	1 cut(s)	377
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	2 cut(s)	164, 348
BfuAI	ACCTGC	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	377
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	2 cut(s)	504, 507
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	2 cut(s)	505, 508
Bme1390I	CCNGG	3 cut(s)	291, 318, 471
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	3 cut(s)	311, 335, 395
BmiI	GGNNCC	1 cut(s)	527
BmrFI	CCNGG	3 cut(s)	291, 318, 471
BmsI	GCATC	2 cut(s)	103, 174
BpmI	CTGGAG	1 cut(s)	411
Bpu1102I	GCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	247
BpuMI	CCSGG	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	401
BsaBI	GATNNNNATC	1 cut(s)	81
BsaI	GGTCTC	1 cut(s)	348
BsaJI	CCNNGG	4 cut(s)	153, 388, 451, 481
Bsc4I	CCNNNNNNNGG	4 cut(s)	308, 368, 404, 476
Bse8I	GATNNNNATC	1 cut(s)	81
BseBI	CCWGG	2 cut(s)	318, 471
BseDI	CCNNGG	4 cut(s)	153, 388, 451, 481
BseGI	GGATG	2 cut(s)	94, 189
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	4 cut(s)	308, 368, 404, 476
BseMII	CTCAG	1 cut(s)	24
BseXI	GCAGC	2 cut(s)	515, 518
BsgI	GTGCAG	2 cut(s)	507, 522
BshFI	GGCC	4 cut(s)	312, 396, 469, 480
BsiHKAI	GWGCWC	1 cut(s)	427
BsiSI	CCGG	1 cut(s)	291
BslFI	GGGAC	3 cut(s)	245, 285, 345
BslI	CCNNNNNNNGG	4 cut(s)	308, 368, 404, 476
BsmAI	GTCTC	2 cut(s)	164, 348
BsmFI	GGGAC	3 cut(s)	245, 285, 345
BsnI	GGCC	4 cut(s)	312, 396, 469, 480
Bso31I	GGTCTC	1 cut(s)	348
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp143I	GATC	2 cut(s)	30, 322
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	1 cut(s)	492
BspANI	GGCC	4 cut(s)	312, 396, 469, 480
BspCNI	CTCAG	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	527
BspMI	ACCTGC	1 cut(s)	126
BspTNI	GGTCTC	1 cut(s)	348
BssECI	CCNNGG	4 cut(s)	153, 388, 451, 481
BssMI	GATC	2 cut(s)	30, 322
BssT1I	CCWWGG	2 cut(s)	153, 451
Bst2UI	CCWGG	2 cut(s)	318, 471
Bst4CI	ACNGT	4 cut(s)	359, 377, 389, 500
BstBAI	YACGTR	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	3 cut(s)	10, 69, 285
BstDSI	CCRYGG	2 cut(s)	388, 481
BstEII	GGTNACC	1 cut(s)	371
BstF5I	GGATG	2 cut(s)	94, 189
BstKTI	GATC	2 cut(s)	33, 325
BstMAI	GTCTC	2 cut(s)	164, 348
BstMBI	GATC	2 cut(s)	30, 322
BstNI	CCWGG	2 cut(s)	318, 471
BstPI	GGTNACC	1 cut(s)	371
BstSCI	CCNGG	3 cut(s)	289, 316, 469
BstV1I	GCAGC	2 cut(s)	515, 518
BstX2I	RGATCY	1 cut(s)	30
BstXI	CCANNNNNNTGG	1 cut(s)	458
BstYI	RGATCY	1 cut(s)	30
BsuI	GTATCC	1 cut(s)	377
BsuRI	GGCC	4 cut(s)	312, 396, 469, 480
BtgI	CCRYGG	2 cut(s)	388, 481
BtsCI	GGATG	2 cut(s)	94, 189
BtsIMutI	CAGTG	1 cut(s)	505
BveI	ACCTGC	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	490
Cfr13I	GGNCC	3 cut(s)	311, 335, 395
CsiI	ACCWGGT	1 cut(s)	316
Csp6I	GTAC	2 cut(s)	110, 160
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	9 cut(s)	133, 289, 312, 396, 425, 431, 442, 469, 480
CviKI_1	RGCY	9 cut(s)	133, 289, 312, 396, 425, 431, 442, 469, 480
CviQI	GTAC	2 cut(s)	110, 160
DdeI	CTNAG	3 cut(s)	10, 69, 285
DpnI	GATC	2 cut(s)	32, 324
DpnII	GATC	2 cut(s)	30, 322
DraIII	CACNNNGTG	2 cut(s)	320, 404
EaeI	YGGCCR	1 cut(s)	478
Ecl136II	GAGCTC	1 cut(s)	425
Eco130I	CCWWGG	2 cut(s)	153, 451
Eco147I	AGGCCT	1 cut(s)	469
Eco24I	GRGCYC	1 cut(s)	427
Eco31I	GGTCTC	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	335
Eco53kI	GAGCTC	1 cut(s)	425
Eco72I	CACGTG	1 cut(s)	401
Eco91I	GGTNACC	1 cut(s)	371
EcoICRI	GAGCTC	1 cut(s)	425
EcoO65I	GGTNACC	1 cut(s)	371
EcoRII	CCWGG	2 cut(s)	316, 469
EcoT14I	CCWWGG	2 cut(s)	153, 451
EcoT22I	ATGCAT	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	427
ErhI	CCWWGG	2 cut(s)	153, 451
FaeI	CATG	1 cut(s)	139
FaiI	YATR	2 cut(s)	61, 137
FaqI	GGGAC	3 cut(s)	245, 285, 345
FatI	CATG	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	504, 507
FokI	GGATG	2 cut(s)	81, 196
FriOI	GRGCYC	1 cut(s)	427
Fsp4HI	GCNGC	2 cut(s)	504, 507
GluI	GCNGC	2 cut(s)	504, 507
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	4 cut(s)	312, 396, 469, 480
HapII	CCGG	1 cut(s)	291
Hin1II	CATG	1 cut(s)	139
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	3 cut(s)	332, 383, 419
Hpy188I	TCNGA	4 cut(s)	13, 204, 253, 349
Hpy188III	TCNNGA	1 cut(s)	226
HpyAV	CCTTC	5 cut(s)	67, 206, 254, 258, 409
HpyCH4III	ACNGT	4 cut(s)	359, 377, 389, 500
HpyCH4IV	ACGT	2 cut(s)	162, 400
HpyCH4V	TGCA	6 cut(s)	36, 121, 139, 187, 488, 503
HpyF3I	CTNAG	3 cut(s)	10, 69, 285
HpySE526I	ACGT	2 cut(s)	162, 400
Hsp92II	CATG	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	30, 322
LmnI	GCTCC	2 cut(s)	422, 430
Lsp1109I	GCAGC	2 cut(s)	515, 518
LweI	GCATC	2 cut(s)	103, 174
MabI	ACCWGGT	1 cut(s)	316
MaeII	ACGT	2 cut(s)	162, 400
MaeIII	GTNAC	2 cut(s)	371, 494
MalI	GATC	2 cut(s)	32, 324
MboI	GATC	2 cut(s)	30, 322
MboII	GAAGA	1 cut(s)	286
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	1 cut(s)	427
MluCI	AATT	1 cut(s)	216
MnlI	CCTC	5 cut(s)	46, 326, 351, 386, 449
Mph1103I	ATGCAT	1 cut(s)	189
MroXI	GAANNNNTTC	1 cut(s)	77
MseI	TTAA	2 cut(s)	129, 240
MslI	CAYNNNNRTG	1 cut(s)	178
MspA1I	CMGCKG	1 cut(s)	431
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	3 cut(s)	291, 318, 471
MvaI	CCWGG	2 cut(s)	318, 471
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	2 cut(s)	30, 322
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	1 cut(s)	527
NmuCI	GTSAC	1 cut(s)	371
NsiI	ATGCAT	1 cut(s)	189
PceI	AGGCCT	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	77
PflMI	CCANNNNNTGG	1 cut(s)	404
PkrI	GCNGC	2 cut(s)	505, 508
PmaCI	CACGTG	1 cut(s)	401
PmlI	CACGTG	1 cut(s)	401
Ppu21I	YACGTR	1 cut(s)	401
Psp124BI	GAGCTC	1 cut(s)	427
Psp6I	CCWGG	2 cut(s)	316, 469
PspCI	CACGTG	1 cut(s)	401
PspEI	GGTNACC	1 cut(s)	371
PspGI	CCWGG	2 cut(s)	316, 469
PspN4I	GGNNCC	1 cut(s)	527
PspPI	GGNCC	3 cut(s)	311, 335, 395
PsuI	RGATCY	1 cut(s)	30
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	2 cut(s)	111, 161
RsaNI	GTAC	2 cut(s)	110, 160
RseI	CAYNNNNRTG	1 cut(s)	178
SacI	GAGCTC	1 cut(s)	427
SaqAI	TTAA	2 cut(s)	129, 240
SatI	GCNGC	2 cut(s)	504, 507
Sau3AI	GATC	2 cut(s)	30, 322
Sau96I	GGNCC	3 cut(s)	311, 335, 395
ScrFI	CCNGG	3 cut(s)	291, 318, 471
SduI	GDGCHC	1 cut(s)	427
SexAI	ACCWGGT	1 cut(s)	316
SfaNI	GCATC	2 cut(s)	103, 174
SinI	GGWCC	1 cut(s)	335
SmiMI	CAYNNNNRTG	1 cut(s)	178
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
Sse9I	AATT	1 cut(s)	216
SseBI	AGGCCT	1 cut(s)	469
SsiI	CCGC	1 cut(s)	492
SstI	GAGCTC	1 cut(s)	427
StuI	AGGCCT	1 cut(s)	469
StyD4I	CCNGG	3 cut(s)	289, 316, 469
StyI	CCWWGG	2 cut(s)	153, 451
TaaI	ACNGT	4 cut(s)	359, 377, 389, 500
TaiI	ACGT	2 cut(s)	165, 403
TasI	AATT	1 cut(s)	216
Tru1I	TTAA	2 cut(s)	129, 240
Tru9I	TTAA	2 cut(s)	129, 240
TscAI	CASTG	1 cut(s)	505
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	2 cut(s)	503, 506
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	1 cut(s)	225
TspGWI	ACGGA	1 cut(s)	87
TspRI	CASTG	1 cut(s)	505
Van91I	CCANNNNNTGG	1 cut(s)	404
VpaK11BI	GGWCC	1 cut(s)	335
XcmI	CCANNNNNNNNNTGG	1 cut(s)	458
XmnI	GAANNNNTTC	1 cut(s)	77
Zsp2I	ATGCAT	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.