Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Reverse (-)

21800807 .. 21802898

Gene Structure 2092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1089600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGATCATTTCAGAGAAGAACCGTCGTGAGATCTCCAAGTACCTCTTTCAAGAGGGAGTTTGTTATGCAAAGAAGGACTATAACTTGGCAAAGCACCCGGATATCGATGTGCCGAACCTGCAGGTGATTAAGCTGATGCAGAGCCTTAAGTCGAAGGAGTATGTGAGAGAAACTTTTGCTTGGATGCATTACTACTGGTACCTTACCAATGACGGTATCGAGTTTTTGAGGACCTACCTCAATCTCCCTTCTGAGATTGTACCTGCAACTTTGAAGAAGCAGGCCAAGCCTGCTGGCCGCCCAATGGGGCTGTCTGGTGACCGCCCACGTGGCCCATCTCGCTTTGATGGAGAACGTAGATTCGGTGGTGATAGGGATGGGTACCGTGGAGGACCCCGTGCACCTGGTGGTGACTTTGGTGATAAGGGTGGAGCTCCTGCTGATTTCAAGCCTTCTTTTGGGGGCCCTGGTGGAAGGCCTGGCTTCGGTCGTGGAGCTGGTGGTTTTGGTGCAGGCCCAGCTAGCAGCTCTAACCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0001763 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009653 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010252 GO:0010346 GO:0015935 GO:0016043 GO:0022603 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030312 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042592 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048367 GO:0048507 GO:0048532 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0051239 GO:0060688 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0090506 GO:0097159 GO:1900618 GO:1901363 GO:1905393 GO:1905428 GO:1990904 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

S10_plectin

Protein Analysis

181

Amino Acids

19.74

Weight (kDa)

9.68

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S10_plectin	PF03501	3 - 94	7.4e-43	Plectin/S10 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	112
Acc36I	ACCTGC	3 cut(s)	112, 126, 271
Acc65I	GGTACC	2 cut(s)	198, 381
AccB1I	GGYRCC	2 cut(s)	198, 381
AciI	CCGC	2 cut(s)	298, 322
AcoI	YGGCCR	1 cut(s)	295
AcvI	CACGTG	1 cut(s)	329
AdeI	CACNNNGTG	1 cut(s)	407
AfaI	GTAC	4 cut(s)	41, 200, 261, 383
AfiI	CCNNNNNNNGG	3 cut(s)	304, 458, 485
AflII	CTTAAG	1 cut(s)	146
AgsI	TTSAA	3 cut(s)	50, 274, 448
AjnI	CCWGG	3 cut(s)	403, 466, 478
AluBI	AGCT	5 cut(s)	133, 434, 497, 521, 528
AluI	AGCT	5 cut(s)	133, 434, 497, 521, 528
Alw21I	GWGCWC	2 cut(s)	403, 436
Alw44I	GTGCAC	1 cut(s)	399
AoxI	GGCC	6 cut(s)	282, 295, 331, 463, 476, 514
ApaI	GGGCCC	1 cut(s)	467
ApaLI	GTGCAC	1 cut(s)	399
ApeKI	GCWGC	1 cut(s)	525
Asp718I	GGTACC	2 cut(s)	198, 381
AspS9I	GGNCC	6 cut(s)	231, 332, 392, 463, 464, 515
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	5 cut(s)	136, 329, 380, 422, 431
AsuNHI	GCTAGC	1 cut(s)	521
AvaII	GGWCC	2 cut(s)	231, 392
BaeGI	GKGCMC	2 cut(s)	403, 467
BanI	GGYRCC	2 cut(s)	198, 381
BanII	GRGCYC	2 cut(s)	436, 467
BbrPI	CACGTG	1 cut(s)	329
Bbv12I	GWGCWC	2 cut(s)	403, 436
BbvI	GCAGC	1 cut(s)	537
BccI	CCATC	3 cut(s)	341, 343, 371
BciT130I	CCWGG	3 cut(s)	405, 468, 480
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	98
BfaI	CTAG	1 cut(s)	522
BfmI	CTRYAG	1 cut(s)	119
BfrI	CTTAAG	1 cut(s)	146
BfuAI	ACCTGC	3 cut(s)	112, 126, 271
BglI	GCCNNNNNGGC	1 cut(s)	330
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	2 cut(s)	298, 526
BlsI	GCNGC	2 cut(s)	299, 527
Bme1390I	CCNGG	4 cut(s)	98, 405, 468, 480
Bme18I	GGWCC	2 cut(s)	231, 392
BmgT120I	GGNCC	6 cut(s)	231, 332, 392, 463, 464, 515
BmiI	GGNNCC	5 cut(s)	200, 383, 394, 464, 465
BmrFI	CCNGG	4 cut(s)	98, 405, 468, 480
BmsI	GCATC	2 cut(s)	126, 174
BmtI	GCTAGC	1 cut(s)	525
BpuMI	CCSGG	1 cut(s)	98
Bsa29I	ATCGAT	1 cut(s)	105
BsaAI	YACGTR	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	385, 466
Bsc4I	CCNNNNNNNGG	3 cut(s)	304, 458, 485
Bse1I	ACTGG	1 cut(s)	200
BseBI	CCWGG	3 cut(s)	405, 468, 480
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	2 cut(s)	385, 466
BseGI	GGATG	2 cut(s)	189, 382
BseLI	CCNNNNNNNGG	3 cut(s)	304, 458, 485
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	200
BseSI	GKGCMC	2 cut(s)	403, 467
BseXI	GCAGC	1 cut(s)	537
BseYI	CCCAGC	1 cut(s)	517
BsgI	GTGCAG	1 cut(s)	531
Bsh1285I	CGRYCG	1 cut(s)	490
BshFI	GGCC	6 cut(s)	284, 297, 333, 465, 478, 516
BshNI	GGYRCC	2 cut(s)	198, 381
BshVI	ATCGAT	1 cut(s)	105
BsiEI	CGRYCG	1 cut(s)	490
BsiHKAI	GWGCWC	2 cut(s)	403, 436
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	3 cut(s)	304, 458, 485
BsnI	GGCC	6 cut(s)	284, 297, 333, 465, 478, 516
Bsp120I	GGGCCC	1 cut(s)	463
Bsp1286I	GDGCHC	3 cut(s)	403, 436, 467
Bsp143I	GATC	2 cut(s)	3, 30
BspACI	CCGC	2 cut(s)	298, 322
BspANI	GGCC	6 cut(s)	284, 297, 333, 465, 478, 516
BspCNI	CTCAG	1 cut(s)	244
BspDI	ATCGAT	1 cut(s)	105
BspLI	GGNNCC	5 cut(s)	200, 383, 394, 464, 465
BspMAI	CTGCAG	1 cut(s)	123
BspMI	ACCTGC	3 cut(s)	112, 126, 271
BspOI	GCTAGC	1 cut(s)	525
BspT107I	GGYRCC	2 cut(s)	198, 381
BspTI	CTTAAG	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	385, 466
BssMI	GATC	2 cut(s)	3, 30
Bst2UI	CCWGG	3 cut(s)	405, 468, 480
Bst4CI	ACNGT	3 cut(s)	23, 215, 386
BstAFI	CTTAAG	1 cut(s)	146
BstBAI	YACGTR	1 cut(s)	329
BstC8I	GCNNGC	5 cut(s)	282, 291, 295, 514, 523
BstDEI	CTNAG	1 cut(s)	252
BstDSI	CCRYGG	1 cut(s)	385
BstEII	GGTNACC	1 cut(s)	317
BstF5I	GGATG	2 cut(s)	189, 382
BstKTI	GATC	2 cut(s)	6, 33
BstMBI	GATC	2 cut(s)	3, 30
BstMCI	CGRYCG	1 cut(s)	490
BstMWI	GCNNNNNNNGC	7 cut(s)	118, 286, 290, 330, 339, 518, 522
BstNI	CCWGG	3 cut(s)	405, 468, 480
BstPI	GGTNACC	1 cut(s)	317
BstSCI	CCNGG	4 cut(s)	96, 403, 466, 478
BstSFI	CTRYAG	1 cut(s)	119
BstSLI	GKGCMC	2 cut(s)	403, 467
BstV1I	GCAGC	1 cut(s)	537
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
Bsu15I	ATCGAT	1 cut(s)	105
BsuRI	GGCC	6 cut(s)	284, 297, 333, 465, 478, 516
BsuTUI	ATCGAT	1 cut(s)	105
BtgI	CCRYGG	1 cut(s)	385
BtsCI	GGATG	2 cut(s)	189, 382
BveI	ACCTGC	3 cut(s)	112, 126, 271
Cac8I	GCNNGC	5 cut(s)	282, 291, 295, 514, 523
Cfr13I	GGNCC	6 cut(s)	231, 332, 392, 463, 464, 515
ClaI	ATCGAT	1 cut(s)	105
CsiI	ACCWGGT	1 cut(s)	403
Csp6I	GTAC	4 cut(s)	40, 199, 260, 382
CviQI	GTAC	4 cut(s)	40, 199, 260, 382
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	5, 32
DpnII	GATC	2 cut(s)	3, 30
DraIII	CACNNNGTG	1 cut(s)	407
EaeI	YGGCCR	1 cut(s)	295
Ecl136II	GAGCTC	1 cut(s)	434
Eco147I	AGGCCT	1 cut(s)	478
Eco24I	GRGCYC	2 cut(s)	436, 467
Eco32I	GATATC	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	231, 392
Eco53kI	GAGCTC	1 cut(s)	434
Eco72I	CACGTG	1 cut(s)	329
Eco91I	GGTNACC	1 cut(s)	317
EcoICRI	GAGCTC	1 cut(s)	434
EcoO109I	RGGNCCY	4 cut(s)	231, 392, 463, 464
EcoO65I	GGTNACC	1 cut(s)	317
EcoRII	CCWGG	3 cut(s)	403, 466, 478
EcoRV	GATATC	1 cut(s)	103
EcoT22I	ATGCAT	1 cut(s)	189
EcoT38I	GRGCYC	2 cut(s)	436, 467
FaiI	YATR	3 cut(s)	66, 81, 162
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	298, 526
FokI	GGATG	2 cut(s)	196, 389
FriOI	GRGCYC	2 cut(s)	436, 467
Fsp4HI	GCNGC	2 cut(s)	298, 526
FspBI	CTAG	1 cut(s)	522
GluI	GCNGC	2 cut(s)	298, 526
GsaI	CCCAGC	1 cut(s)	521
HaeIII	GGCC	6 cut(s)	284, 297, 333, 465, 478, 516
HapII	CCGG	1 cut(s)	98
HinfI	GANTC	1 cut(s)	360
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	5 cut(s)	136, 329, 380, 422, 431
Hpy166II	GTNNAC	1 cut(s)	401
Hpy188I	TCNGA	2 cut(s)	13, 253
Hpy188III	TCNNGA	3 cut(s)	26, 50, 540
Hpy8I	GTNNAC	1 cut(s)	401
Hpy99I	CGWCG	1 cut(s)	27
HpyAV	CCTTC	5 cut(s)	67, 148, 258, 462, 468
HpyCH4III	ACNGT	3 cut(s)	23, 215, 386
HpyCH4IV	ACGT	2 cut(s)	328, 355
HpyCH4V	TGCA	7 cut(s)	68, 121, 139, 187, 266, 401, 512
HpyF10VI	GCNNNNNNNGC	7 cut(s)	118, 286, 290, 330, 339, 518, 522
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	2 cut(s)	328, 355
KpnI	GGTACC	2 cut(s)	202, 385
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 30
LmnI	GCTCC	3 cut(s)	431, 439, 494
Lsp1109I	GCAGC	1 cut(s)	537
LweI	GCATC	2 cut(s)	126, 174
MabI	ACCWGGT	1 cut(s)	403
MaeI	CTAG	1 cut(s)	522
MaeII	ACGT	2 cut(s)	328, 355
MaeIII	GTNAC	2 cut(s)	317, 410
MalI	GATC	2 cut(s)	5, 32
MboI	GATC	2 cut(s)	3, 30
MboII	GAAGA	2 cut(s)	28, 286
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	3 cut(s)	403, 436, 467
MnlI	CCTC	5 cut(s)	46, 53, 222, 248, 383
Mph1103I	ATGCAT	1 cut(s)	189
MseI	TTAA	2 cut(s)	129, 147
MspCI	CTTAAG	1 cut(s)	146
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	4 cut(s)	98, 405, 468, 480
MvaI	CCWGG	3 cut(s)	405, 468, 480
MwoI	GCNNNNNNNGC	7 cut(s)	118, 286, 290, 330, 339, 518, 522
NciI	CCSGG	1 cut(s)	98
NdeII	GATC	2 cut(s)	3, 30
NheI	GCTAGC	1 cut(s)	521
NlaIV	GGNNCC	5 cut(s)	200, 383, 394, 464, 465
NmuCI	GTSAC	2 cut(s)	317, 410
NsiI	ATGCAT	1 cut(s)	189
PaqCI	CACCTGC	1 cut(s)	112
PceI	AGGCCT	1 cut(s)	478
PfeI	GAWTC	1 cut(s)	360
PkrI	GCNGC	2 cut(s)	299, 527
PmaCI	CACGTG	1 cut(s)	329
PmlI	CACGTG	1 cut(s)	329
Ppu21I	YACGTR	1 cut(s)	329
PpuMI	RGGWCCY	2 cut(s)	231, 392
Psp124BI	GAGCTC	1 cut(s)	436
Psp5II	RGGWCCY	2 cut(s)	231, 392
Psp6I	CCWGG	3 cut(s)	403, 466, 478
PspCI	CACGTG	1 cut(s)	329
PspEI	GGTNACC	1 cut(s)	317
PspFI	CCCAGC	1 cut(s)	517
PspGI	CCWGG	3 cut(s)	403, 466, 478
PspN4I	GGNNCC	5 cut(s)	200, 383, 394, 464, 465
PspOMI	GGGCCC	1 cut(s)	463
PspPI	GGNCC	6 cut(s)	231, 332, 392, 463, 464, 515
PspPPI	RGGWCCY	2 cut(s)	231, 392
PstI	CTGCAG	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	30
RsaI	GTAC	4 cut(s)	41, 200, 261, 383
RsaNI	GTAC	4 cut(s)	40, 199, 260, 382
SacI	GAGCTC	1 cut(s)	436
SaqAI	TTAA	2 cut(s)	129, 147
SatI	GCNGC	2 cut(s)	298, 526
Sau3AI	GATC	2 cut(s)	3, 30
Sau96I	GGNCC	6 cut(s)	231, 332, 392, 463, 464, 515
SbfI	CCTGCAGG	1 cut(s)	123
ScrFI	CCNGG	4 cut(s)	98, 405, 468, 480
SdaI	CCTGCAGG	1 cut(s)	123
SduI	GDGCHC	3 cut(s)	403, 436, 467
SexAI	ACCWGGT	1 cut(s)	403
SfaNI	GCATC	2 cut(s)	126, 174
SfcI	CTRYAG	1 cut(s)	119
SinI	GGWCC	2 cut(s)	231, 392
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse8387I	CCTGCAGG	1 cut(s)	123
SseBI	AGGCCT	1 cut(s)	478
SsiI	CCGC	2 cut(s)	298, 322
SspMI	CTAG	1 cut(s)	522
SstI	GAGCTC	1 cut(s)	436
StuI	AGGCCT	1 cut(s)	478
StyD4I	CCNGG	4 cut(s)	96, 403, 466, 478
TaaI	ACNGT	3 cut(s)	23, 215, 386
TaiI	ACGT	2 cut(s)	331, 358
TaqI	TCGA	3 cut(s)	105, 152, 219
TaqII	GACCGA	1 cut(s)	476
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	1 cut(s)	360
Tru1I	TTAA	2 cut(s)	129, 147
Tru9I	TTAA	2 cut(s)	129, 147
TseFI	GTSAC	2 cut(s)	317, 410
TseI	GCWGC	1 cut(s)	525
Tsp45I	GTSAC	2 cut(s)	317, 410
Vha464I	CTTAAG	1 cut(s)	146
VneI	GTGCAC	1 cut(s)	399
VpaK11BI	GGWCC	2 cut(s)	231, 392
XspI	CTAG	1 cut(s)	522
Zsp2I	ATGCAT	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.