Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005166.1

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Reverse (-)

366 .. 653

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005166.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atgccgaagcatccagagatcgacgtgccgaatctgcaggtgattaagctgatgcagagcttcaagtccaaggagtatgtgagggagaccttcgcctggatgcactattactggtacctcaccaatgatggcattgagttcttgaggaactacctcaacctgccctcggagattgtgcccaacactctcaagaagcaggctaagcccgccggccgtcctttcggcggcccaccaggcgaccgccctcggtacttgacctatttcatcatcctgtttagggtttattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0001763 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009653 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010252 GO:0010346 GO:0015935 GO:0016043 GO:0022603 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030312 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042592 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048367 GO:0048507 GO:0048532 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0051239 GO:0060688 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0090506 GO:0097159 GO:1900618 GO:1901363 GO:1905393 GO:1905428 GO:1990904 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

S10_plectin

Protein Analysis

95

Amino Acids

11.36

Weight (kDa)

9.56

Isoelectric Point (pI)

62.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	28
Acc36I	ACCTGC	2 cut(s)	28, 168
Acc65I	GGTACC	1 cut(s)	114
AccB1I	GGYRCC	1 cut(s)	114
AciI	CCGC	3 cut(s)	207, 225, 241
AcoI	YGGCCR	1 cut(s)	211
AfaI	GTAC	2 cut(s)	116, 251
AfiI	CCNNNNNNNGG	4 cut(s)	96, 166, 224, 277
AgsI	TTSAA	1 cut(s)	64
AjiI	CACGTC	1 cut(s)	25
AjnI	CCWGG	2 cut(s)	95, 232
AluBI	AGCT	2 cut(s)	49, 60
AluI	AGCT	2 cut(s)	49, 60
Alw26I	GTCTC	1 cut(s)	80
AoxI	GGCC	2 cut(s)	211, 226
Asp718I	GGTACC	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	227
AsuHPI	GGTGA	2 cut(s)	52, 112
BaeGI	GKGCMC	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	114
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	1 cut(s)	198
BciT130I	CCWGG	2 cut(s)	97, 234
BcoDI	GTCTC	1 cut(s)	80
BfmI	CTRYAG	1 cut(s)	35
BfuAI	ACCTGC	2 cut(s)	28, 168
BglI	GCCNNNNNGGC	1 cut(s)	234
BisI	GCNGC	1 cut(s)	226
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	227
Bme1390I	CCNGG	2 cut(s)	97, 234
BmgBI	CACGTC	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	2 cut(s)	97, 234
BmsI	GCATC	3 cut(s)	19, 42, 90
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	2 cut(s)	163, 173
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	3 cut(s)	69, 165, 245
Bsc4I	CCNNNNNNNGG	4 cut(s)	96, 166, 224, 277
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	116
BseBI	CCWGG	2 cut(s)	97, 234
BseDI	CCNNGG	3 cut(s)	69, 165, 245
BseGI	GGATG	3 cut(s)	10, 105, 267
BseLI	CCNNNNNNNGG	4 cut(s)	96, 166, 224, 277
BseNI	ACTGG	1 cut(s)	116
BseSI	GKGCMC	1 cut(s)	180
BseX3I	CGGCCG	1 cut(s)	211
Bsh1285I	CGRYCG	2 cut(s)	214, 241
BshFI	GGCC	2 cut(s)	213, 228
BshNI	GGYRCC	1 cut(s)	114
BsiEI	CGRYCG	2 cut(s)	214, 241
BsiSI	CCGG	1 cut(s)	210
BslI	CCNNNNNNNGG	4 cut(s)	96, 166, 224, 277
BsmAI	GTCTC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	213, 228
Bso31I	GGTCTC	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	18
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	3 cut(s)	207, 225, 241
BspANI	GGCC	2 cut(s)	213, 228
BspLI	GGNNCC	1 cut(s)	116
BspMAI	CTGCAG	1 cut(s)	39
BspMI	ACCTGC	2 cut(s)	28, 168
BspT107I	GGYRCC	1 cut(s)	114
BspTNI	GGTCTC	1 cut(s)	80
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	3 cut(s)	69, 165, 245
BssMI	GATC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	2 cut(s)	97, 234
BstC8I	GCNNGC	3 cut(s)	198, 207, 211
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	3 cut(s)	10, 105, 267
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	1 cut(s)	18
BstMCI	CGRYCG	2 cut(s)	214, 241
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 202, 206, 234
BstNI	CCWGG	2 cut(s)	97, 234
BstSCI	CCNGG	2 cut(s)	95, 232
BstSFI	CTRYAG	1 cut(s)	35
BstSLI	GKGCMC	1 cut(s)	180
BstZI	CGGCCG	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	213, 228
BtrI	CACGTC	1 cut(s)	25
BtsCI	GGATG	3 cut(s)	10, 105, 267
BveI	ACCTGC	2 cut(s)	28, 168
Cac8I	GCNNGC	3 cut(s)	198, 207, 211
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	115, 250
CviJI	RGCY	6 cut(s)	49, 60, 200, 205, 213, 228
CviKI_1	RGCY	6 cut(s)	49, 60, 200, 205, 213, 228
CviQI	GTAC	2 cut(s)	115, 250
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
EaeI	YGGCCR	1 cut(s)	211
EagI	CGGCCG	1 cut(s)	211
EclXI	CGGCCG	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	80
Eco52I	CGGCCG	1 cut(s)	211
EcoRII	CCWGG	2 cut(s)	95, 232
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaiI	YATR	1 cut(s)	78
FauI	CCCGC	1 cut(s)	214
Fnu4HI	GCNGC	1 cut(s)	226
FokI	GGATG	2 cut(s)	112, 254
Fsp4HI	GCNGC	1 cut(s)	226
GluI	GCNGC	1 cut(s)	226
HaeIII	GGCC	2 cut(s)	213, 228
HapII	CCGG	1 cut(s)	210
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	2 cut(s)	52, 112
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	3 cut(s)	14, 142, 190
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	1 cut(s)	100
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	3 cut(s)	37, 55, 103
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 202, 206, 234
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	24
KpnI	GGTACC	1 cut(s)	118
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	18
LweI	GCATC	3 cut(s)	19, 42, 90
MaeII	ACGT	1 cut(s)	24
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	180
MnlI	CCTC	6 cut(s)	75, 128, 138, 164, 175, 255
MroNI	GCCGGC	1 cut(s)	209
MseI	TTAA	1 cut(s)	45
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	2 cut(s)	97, 234
MvaI	CCWGG	2 cut(s)	97, 234
MwoI	GCNNNNNNNGC	4 cut(s)	34, 202, 206, 234
NaeI	GCCGGC	1 cut(s)	211
NdeII	GATC	1 cut(s)	18
NgoMIV	GCCGGC	1 cut(s)	209
NlaIV	GGNNCC	1 cut(s)	116
PaqCI	CACCTGC	1 cut(s)	28
PdiI	GCCGGC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	227
Psp6I	CCWGG	2 cut(s)	95, 232
PspGI	CCWGG	2 cut(s)	95, 232
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	227
PstI	CTGCAG	1 cut(s)	39
RsaI	GTAC	2 cut(s)	116, 251
RsaNI	GTAC	2 cut(s)	115, 250
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	1 cut(s)	226
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	1 cut(s)	227
ScrFI	CCNGG	2 cut(s)	97, 234
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	9 cut(s)	27, 42, 51, 62, 92, 120, 156, 162, 260
SfaNI	GCATC	3 cut(s)	19, 42, 90
SfcI	CTRYAG	1 cut(s)	35
SmlI	CTYRAG	2 cut(s)	142, 188
SmoI	CTYRAG	2 cut(s)	142, 188
SsiI	CCGC	3 cut(s)	207, 225, 241
StyD4I	CCNGG	2 cut(s)	95, 232
StyI	CCWWGG	1 cut(s)	69
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	1 cut(s)	21
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TspDTI	ATGAA	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.