Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Forward (+)

19653406 .. 19654714

Gene Structure 1309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG176200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCACTATTACTGGTGCCTCACCAATGATGGCATTGAGTTCTTGAGGAACTACCTCAACCTGCCCTCGGAGATTGTGCCCAACACTCTCAAGAAGCAGGCTAAGCCCGCCGGCCGTCCTTTCGGCGGCCCACCAGGCGAACGCCCTCGTGGCCCACCTCGCTTTGGTGATGGAGAGCGCAGATTTGGAGGTGACCGTGATGGTTACCGTGGAGGTCCTCGTGGTGGACCAGGAGGTGACTTTGGCAGGGACAAGGGAGGAGCCCCTGCTGACTACAGACCTTCTTTCGGGACTCTTGCTATAGGCTCTCATAACTCTGCCTTCCTACAGCAGGCTTCATACATTACTGGTGGTGTATATCTGAAGCCCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0001763 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009653 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010252 GO:0010346 GO:0015935 GO:0016043 GO:0022603 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030312 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042592 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048367 GO:0048507 GO:0048532 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0051239 GO:0060688 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0090506 GO:0097159 GO:1900618 GO:1901363 GO:1905393 GO:1905428 GO:1990904 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

S10_plectin

Protein Analysis

124

Amino Acids

13.43

Weight (kDa)

9.72

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S10_plectin	PF03501	2 - 33	3e-12	Plectin/S10 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	69
AccB1I	GGYRCC	1 cut(s)	15
AciI	CCGC	2 cut(s)	108, 126
AcoI	YGGCCR	1 cut(s)	112
AfiI	CCNNNNNNNGG	6 cut(s)	67, 125, 164, 224, 287, 331
AjnI	CCWGG	2 cut(s)	133, 229
AoxI	GGCC	3 cut(s)	112, 127, 151
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	4 cut(s)	128, 152, 215, 227
AsuHPI	GGTGA	4 cut(s)	13, 179, 203, 248
AvaII	GGWCC	2 cut(s)	215, 227
BaeGI	GKGCMC	1 cut(s)	81
BanI	GGYRCC	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	265
BauI	CACGAG	2 cut(s)	147, 219
BccI	CCATC	3 cut(s)	23, 164, 194
BceAI	ACGGC	1 cut(s)	99
BciT130I	CCWGG	2 cut(s)	135, 231
BfmI	CTRYAG	3 cut(s)	274, 300, 326
BfuAI	ACCTGC	1 cut(s)	69
BglI	GCCNNNNNGGC	2 cut(s)	135, 150
BisI	GCNGC	1 cut(s)	127
BlpI	GCTNAGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	128
Bme1390I	CCNGG	2 cut(s)	135, 231
Bme18I	GGWCC	2 cut(s)	215, 227
BmgT120I	GGNCC	4 cut(s)	128, 152, 215, 227
BmiI	GGNNCC	2 cut(s)	17, 262
BmrFI	CCNGG	2 cut(s)	135, 231
Bpu1102I	GCTNAGC	1 cut(s)	102
BpuEI	CTTGAG	2 cut(s)	64, 74
BsaJI	CCNNGG	2 cut(s)	66, 208
Bsc4I	CCNNNNNNNGG	6 cut(s)	67, 125, 164, 224, 287, 331
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	2 cut(s)	17, 352
BseBI	CCWGG	2 cut(s)	135, 231
BseDI	CCNNGG	2 cut(s)	66, 208
BseLI	CCNNNNNNNGG	6 cut(s)	67, 125, 164, 224, 287, 331
BseNI	ACTGG	2 cut(s)	17, 352
BseRI	GAGGAG	1 cut(s)	273
BseSI	GKGCMC	1 cut(s)	81
BseX3I	CGGCCG	1 cut(s)	112
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	3 cut(s)	114, 129, 153
BshNI	GGYRCC	1 cut(s)	15
BsiEI	CGRYCG	1 cut(s)	115
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	2 cut(s)	263, 304
BslI	CCNNNNNNNGG	6 cut(s)	67, 125, 164, 224, 287, 331
BsmFI	GGGAC	2 cut(s)	263, 304
BsnI	GGCC	3 cut(s)	114, 129, 153
Bsp1286I	GDGCHC	2 cut(s)	81, 265
Bsp1720I	GCTNAGC	1 cut(s)	102
BspACI	CCGC	2 cut(s)	108, 126
BspANI	GGCC	3 cut(s)	114, 129, 153
BspLI	GGNNCC	2 cut(s)	17, 262
BspMI	ACCTGC	1 cut(s)	69
BspT107I	GGYRCC	1 cut(s)	15
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	2 cut(s)	17, 352
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	2 cut(s)	66, 208
BssSI	CACGAG	2 cut(s)	147, 219
Bst2BI	CACGAG	2 cut(s)	147, 219
Bst2UI	CCWGG	2 cut(s)	135, 231
Bst4CI	ACNGT	2 cut(s)	197, 209
BstC8I	GCNNGC	4 cut(s)	99, 108, 112, 333
BstDEI	CTNAG	1 cut(s)	102
BstDSI	CCRYGG	1 cut(s)	208
BstEII	GGTNACC	2 cut(s)	191, 203
BstENI	CCTNNNNNAGG	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	180
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	5 cut(s)	103, 107, 135, 150, 159
BstNI	CCWGG	2 cut(s)	135, 231
BstPI	GGTNACC	2 cut(s)	191, 203
BstSCI	CCNGG	2 cut(s)	133, 229
BstSFI	CTRYAG	3 cut(s)	274, 300, 326
BstSLI	GKGCMC	1 cut(s)	81
BstZI	CGGCCG	1 cut(s)	112
BsuRI	GGCC	3 cut(s)	114, 129, 153
BtgI	CCRYGG	1 cut(s)	208
BveI	ACCTGC	1 cut(s)	69
Cac8I	GCNNGC	4 cut(s)	99, 108, 112, 333
CfoI	GCGC	1 cut(s)	180
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	4 cut(s)	128, 152, 215, 227
CviJI	RGCY	9 cut(s)	101, 106, 114, 129, 153, 263, 306, 335, 367
CviKI_1	RGCY	9 cut(s)	101, 106, 114, 129, 153, 263, 306, 335, 367
DdeI	CTNAG	1 cut(s)	102
EaeI	YGGCCR	1 cut(s)	112
EagI	CGGCCG	1 cut(s)	112
EclXI	CGGCCG	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	265
Eco47I	GGWCC	2 cut(s)	215, 227
Eco52I	CGGCCG	1 cut(s)	112
Eco91I	GGTNACC	2 cut(s)	191, 203
EcoNI	CCTNNNNNAGG	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	215
EcoO65I	GGTNACC	2 cut(s)	191, 203
EcoRII	CCWGG	2 cut(s)	133, 229
EcoT38I	GRGCYC	1 cut(s)	265
FaiI	YATR	4 cut(s)	302, 312, 340, 358
FaqI	GGGAC	2 cut(s)	263, 304
FauI	CCCGC	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	127
FriOI	GRGCYC	1 cut(s)	265
Fsp4HI	GCNGC	1 cut(s)	127
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	1 cut(s)	127
HaeIII	GGCC	3 cut(s)	114, 129, 153
HapII	CCGG	1 cut(s)	111
HhaI	GCGC	1 cut(s)	180
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HinfI	GANTC	1 cut(s)	292
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	4 cut(s)	13, 179, 203, 248
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	2 cut(s)	70, 363
Hpy188III	TCNNGA	3 cut(s)	43, 91, 289
Hpy8I	GTNNAC	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	291, 331
HpyCH4III	ACNGT	2 cut(s)	197, 209
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	5 cut(s)	103, 107, 135, 150, 159
HpyF3I	CTNAG	1 cut(s)	102
HspAI	GCGC	1 cut(s)	178
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
LmnI	GCTCC	1 cut(s)	260
MaeIII	GTNAC	3 cut(s)	191, 203, 236
MhlI	GDGCHC	2 cut(s)	81, 265
MlyI	GAGTC	1 cut(s)	286
MroNI	GCCGGC	1 cut(s)	110
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	2 cut(s)	135, 231
MvaI	CCWGG	2 cut(s)	135, 231
MwoI	GCNNNNNNNGC	5 cut(s)	103, 107, 135, 150, 159
NaeI	GCCGGC	1 cut(s)	112
NgoMIV	GCCGGC	1 cut(s)	110
NlaIV	GGNNCC	2 cut(s)	17, 262
NmuCI	GTSAC	2 cut(s)	191, 236
PdiI	GCCGGC	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	128
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
PpuMI	RGGWCCY	1 cut(s)	215
Psp5II	RGGWCCY	1 cut(s)	215
Psp6I	CCWGG	2 cut(s)	133, 229
PspEI	GGTNACC	2 cut(s)	191, 203
PspGI	CCWGG	2 cut(s)	133, 229
PspN4I	GGNNCC	2 cut(s)	17, 262
PspPI	GGNCC	4 cut(s)	128, 152, 215, 227
PspPPI	RGGWCCY	1 cut(s)	215
SatI	GCNGC	1 cut(s)	127
Sau96I	GGNCC	4 cut(s)	128, 152, 215, 227
SchI	GAGTC	1 cut(s)	286
ScrFI	CCNGG	2 cut(s)	135, 231
SduI	GDGCHC	2 cut(s)	81, 265
SetI	ASST	7 cut(s)	57, 63, 160, 193, 217, 238, 283
SfcI	CTRYAG	3 cut(s)	274, 300, 326
SinI	GGWCC	2 cut(s)	215, 227
SmlI	CTYRAG	2 cut(s)	43, 89
SmoI	CTYRAG	2 cut(s)	43, 89
SsiI	CCGC	2 cut(s)	108, 126
StyD4I	CCNGG	2 cut(s)	133, 229
TaaI	ACNGT	2 cut(s)	197, 209
TauI	GCSGC	1 cut(s)	129
TseFI	GTSAC	2 cut(s)	191, 236
Tsp45I	GTSAC	2 cut(s)	191, 236
TspDTI	ATGAA	1 cut(s)	327
VpaK11BI	GGWCC	2 cut(s)	215, 227
XagI	CCTNNNNNAGG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.