Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00168

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Reverse (-)

169112 .. 173095

Gene Structure 3984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G004470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCTTTTCAGAGAAGAAAAATCAAGGCAACAAGGAGTGTGCTATGCGAAGAAGGACTACAACATGCCGAAGCATCCAGAGATCGACGTGCCGAATCTGCAGGAGTATGTGAGGGAGACCTTCGCCTGGATGCACTATTACTGGTACCTCACCAATGATGGCATTGAGTTCTTGAGGAACTACCTCAACCTGCCCTCGGAGATTGTGCCCAACACTCTCAAGAAGCAGGCTAAGCCCGCCGGCCGTCCTTTCGGCGGCCCACCAGGCGACCGCCCTCGTGGCCCACCTCGCTTTGGTGATGGAGAGCGCAGATTTGGAGGTGACCGTGATGGTTACCGTGGAGGTCCTCGTGGTGGACCAGGAGGTGACTTTGGCAGGGACAAGGGAGGAGCCCCTGCTGACTACAGACCTTCTTTCGGGATTATAGTAACGAGCTGGGCCACTGAATTATTTTCTTGGGGACCTGTTTCAATCAACCAAACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0001763 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009653 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010252 GO:0010346 GO:0015935 GO:0016043 GO:0022603 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030312 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042592 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048367 GO:0048507 GO:0048532 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0051239 GO:0060688 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0090506 GO:0097159 GO:1900618 GO:1901363 GO:1905393 GO:1905428 GO:1990904 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

S10_plectin

Protein Analysis

162

Amino Acids

18.34

Weight (kDa)

9.35

Isoelectric Point (pI)

52.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S10_plectin	PF03501	10 - 76	3e-24	Plectin/S10 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	198
Acc65I	GGTACC	1 cut(s)	144
AccB1I	GGYRCC	1 cut(s)	144
AciI	CCGC	3 cut(s)	237, 255, 271
AcoI	YGGCCR	1 cut(s)	241
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	6 cut(s)	126, 196, 254, 293, 353, 416
AgsI	TTSAA	1 cut(s)	471
AjiI	CACGTC	1 cut(s)	88
AjnI	CCWGG	3 cut(s)	125, 262, 358
AluBI	AGCT	1 cut(s)	435
AluI	AGCT	1 cut(s)	435
Alw26I	GTCTC	1 cut(s)	110
AoxI	GGCC	4 cut(s)	241, 256, 280, 438
Asp718I	GGTACC	1 cut(s)	144
AspLEI	GCGC	1 cut(s)	309
AspS9I	GGNCC	6 cut(s)	257, 281, 344, 356, 438, 461
AsuHPI	GGTGA	4 cut(s)	142, 308, 332, 377
AvaII	GGWCC	3 cut(s)	344, 356, 461
BaeGI	GKGCMC	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	394
BarI	GAAGNNNNNNTAC	2 cut(s)	41, 73
BauI	CACGAG	2 cut(s)	276, 348
BccI	CCATC	3 cut(s)	152, 293, 323
BceAI	ACGGC	1 cut(s)	228
BciT130I	CCWGG	3 cut(s)	127, 264, 360
BcoDI	GTCTC	1 cut(s)	110
BfmI	CTRYAG	2 cut(s)	98, 403
BfuAI	ACCTGC	1 cut(s)	198
BglI	GCCNNNNNGGC	2 cut(s)	264, 279
BisI	GCNGC	1 cut(s)	256
BlpI	GCTNAGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	257
Bme1390I	CCNGG	3 cut(s)	127, 264, 360
Bme18I	GGWCC	3 cut(s)	344, 356, 461
BmgBI	CACGTC	1 cut(s)	88
BmgT120I	GGNCC	6 cut(s)	257, 281, 344, 356, 438, 461
BmiI	GGNNCC	3 cut(s)	146, 391, 462
BmrFI	CCNGG	3 cut(s)	127, 264, 360
BmsI	GCATC	2 cut(s)	82, 120
Bpu1102I	GCTNAGC	1 cut(s)	231
BpuEI	CTTGAG	2 cut(s)	193, 203
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	195, 337
Bsc4I	CCNNNNNNNGG	6 cut(s)	126, 196, 254, 293, 353, 416
Bse118I	RCCGGY	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	146
BseBI	CCWGG	3 cut(s)	127, 264, 360
BseDI	CCNNGG	2 cut(s)	195, 337
BseGI	GGATG	2 cut(s)	73, 135
BseLI	CCNNNNNNNGG	6 cut(s)	126, 196, 254, 293, 353, 416
BseNI	ACTGG	1 cut(s)	146
BseRI	GAGGAG	1 cut(s)	402
BseSI	GKGCMC	1 cut(s)	210
BseX3I	CGGCCG	1 cut(s)	241
BseYI	CCCAGC	1 cut(s)	435
Bsh1285I	CGRYCG	2 cut(s)	244, 271
BshFI	GGCC	4 cut(s)	243, 258, 282, 440
BshNI	GGYRCC	1 cut(s)	144
BsiEI	CGRYCG	2 cut(s)	244, 271
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	2 cut(s)	392, 474
BslI	CCNNNNNNNGG	6 cut(s)	126, 196, 254, 293, 353, 416
BsmAI	GTCTC	1 cut(s)	110
BsmFI	GGGAC	2 cut(s)	392, 474
BsnI	GGCC	4 cut(s)	243, 258, 282, 440
Bso31I	GGTCTC	1 cut(s)	110
Bsp1286I	GDGCHC	2 cut(s)	210, 394
Bsp143I	GATC	1 cut(s)	81
Bsp1720I	GCTNAGC	1 cut(s)	231
BspACI	CCGC	3 cut(s)	237, 255, 271
BspANI	GGCC	4 cut(s)	243, 258, 282, 440
BspLI	GGNNCC	3 cut(s)	146, 391, 462
BspMAI	CTGCAG	1 cut(s)	102
BspMI	ACCTGC	1 cut(s)	198
BspT107I	GGYRCC	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	110
BsrFI	RCCGGY	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	146
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	2 cut(s)	195, 337
BssMI	GATC	1 cut(s)	81
BssSI	CACGAG	2 cut(s)	276, 348
Bst2BI	CACGAG	2 cut(s)	276, 348
Bst2UI	CCWGG	3 cut(s)	127, 264, 360
Bst4CI	ACNGT	2 cut(s)	326, 338
BstC8I	GCNNGC	3 cut(s)	228, 237, 241
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	337
BstEII	GGTNACC	2 cut(s)	320, 332
BstF5I	GGATG	2 cut(s)	73, 135
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	1 cut(s)	84
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	1 cut(s)	81
BstMCI	CGRYCG	2 cut(s)	244, 271
BstMWI	GCNNNNNNNGC	6 cut(s)	97, 232, 236, 264, 279, 288
BstNI	CCWGG	3 cut(s)	127, 264, 360
BstNSI	RCATGY	1 cut(s)	67
BstPI	GGTNACC	2 cut(s)	320, 332
BstSCI	CCNGG	3 cut(s)	125, 262, 358
BstSFI	CTRYAG	2 cut(s)	98, 403
BstSLI	GKGCMC	1 cut(s)	210
BstZI	CGGCCG	1 cut(s)	241
BsuRI	GGCC	4 cut(s)	243, 258, 282, 440
BtgI	CCRYGG	1 cut(s)	337
BtrI	CACGTC	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	73, 135
BtsIMutI	CAGTG	1 cut(s)	441
BveI	ACCTGC	1 cut(s)	198
Cac8I	GCNNGC	3 cut(s)	228, 237, 241
CfoI	GCGC	1 cut(s)	309
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	6 cut(s)	257, 281, 344, 356, 438, 461
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	1 cut(s)	64
CviJI	RGCY	8 cut(s)	230, 235, 243, 258, 282, 392, 435, 440
CviKI_1	RGCY	8 cut(s)	230, 235, 243, 258, 282, 392, 435, 440
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
EaeI	YGGCCR	1 cut(s)	241
EagI	CGGCCG	1 cut(s)	241
EclXI	CGGCCG	1 cut(s)	241
Eco24I	GRGCYC	1 cut(s)	394
Eco31I	GGTCTC	1 cut(s)	110
Eco47I	GGWCC	3 cut(s)	344, 356, 461
Eco52I	CGGCCG	1 cut(s)	241
Eco91I	GGTNACC	2 cut(s)	320, 332
EcoO109I	RGGNCCY	2 cut(s)	344, 461
EcoO65I	GGTNACC	2 cut(s)	320, 332
EcoRII	CCWGG	3 cut(s)	125, 262, 358
EcoT38I	GRGCYC	1 cut(s)	394
FaeI	CATG	1 cut(s)	67
FaiI	YATR	4 cut(s)	45, 65, 108, 425
FaqI	GGGAC	2 cut(s)	392, 474
FatI	CATG	1 cut(s)	63
FauI	CCCGC	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	256
FokI	GGATG	2 cut(s)	60, 142
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	1 cut(s)	256
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	1 cut(s)	256
GsaI	CCCAGC	1 cut(s)	439
HaeIII	GGCC	4 cut(s)	243, 258, 282, 440
HapII	CCGG	1 cut(s)	240
HhaI	GCGC	1 cut(s)	309
Hin1II	CATG	1 cut(s)	67
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	4 cut(s)	142, 308, 332, 377
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	2 cut(s)	11, 199
Hpy188III	TCNNGA	4 cut(s)	77, 172, 220, 418
Hpy8I	GTNNAC	1 cut(s)	356
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	3 cut(s)	46, 130, 420
HpyCH4III	ACNGT	2 cut(s)	326, 338
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	2 cut(s)	100, 133
HpyF10VI	GCNNNNNNNGC	6 cut(s)	97, 232, 236, 264, 279, 288
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	67
HspAI	GCGC	1 cut(s)	307
KpnI	GGTACC	1 cut(s)	148
KroI	GCCGGC	1 cut(s)	239
KroNI	GCCGGC	1 cut(s)	241
Kzo9I	GATC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	389
LweI	GCATC	2 cut(s)	82, 120
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	4 cut(s)	320, 332, 365, 427
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	2 cut(s)	26, 61
MhlI	GDGCHC	2 cut(s)	210, 394
MluCI	AATT	1 cut(s)	446
MroNI	GCCGGC	1 cut(s)	239
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	3 cut(s)	127, 264, 360
MvaI	CCWGG	3 cut(s)	127, 264, 360
MwoI	GCNNNNNNNGC	6 cut(s)	97, 232, 236, 264, 279, 288
NaeI	GCCGGC	1 cut(s)	241
NdeII	GATC	1 cut(s)	81
NgoMIV	GCCGGC	1 cut(s)	239
NlaIII	CATG	1 cut(s)	67
NlaIV	GGNNCC	3 cut(s)	146, 391, 462
NmuCI	GTSAC	2 cut(s)	320, 365
NspI	RCATGY	1 cut(s)	67
PdiI	GCCGGC	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	257
PpuMI	RGGWCCY	2 cut(s)	344, 461
Psp5II	RGGWCCY	2 cut(s)	344, 461
Psp6I	CCWGG	3 cut(s)	125, 262, 358
PspEI	GGTNACC	2 cut(s)	320, 332
PspFI	CCCAGC	1 cut(s)	435
PspGI	CCWGG	3 cut(s)	125, 262, 358
PspN4I	GGNNCC	3 cut(s)	146, 391, 462
PspPI	GGNCC	6 cut(s)	257, 281, 344, 356, 438, 461
PspPPI	RGGWCCY	2 cut(s)	344, 461
PstI	CTGCAG	1 cut(s)	102
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	1 cut(s)	81
Sau96I	GGNCC	6 cut(s)	257, 281, 344, 356, 438, 461
ScrFI	CCNGG	3 cut(s)	127, 264, 360
SduI	GDGCHC	2 cut(s)	210, 394
SfaNI	GCATC	2 cut(s)	82, 120
SfcI	CTRYAG	2 cut(s)	98, 403
SinI	GGWCC	3 cut(s)	344, 356, 461
SmlI	CTYRAG	2 cut(s)	172, 218
SmoI	CTYRAG	2 cut(s)	172, 218
Sse9I	AATT	1 cut(s)	446
SsiI	CCGC	3 cut(s)	237, 255, 271
StyD4I	CCNGG	3 cut(s)	125, 262, 358
TaaI	ACNGT	2 cut(s)	326, 338
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	1 cut(s)	84
TasI	AATT	1 cut(s)	446
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	94
TscAI	CASTG	1 cut(s)	448
TseFI	GTSAC	2 cut(s)	320, 365
Tsp45I	GTSAC	2 cut(s)	320, 365
TspRI	CASTG	1 cut(s)	448
VpaK11BI	GGWCC	3 cut(s)	344, 356, 461
XceI	RCATGY	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.