Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Reverse (-)

1833430 .. 1835185

Gene Structure 1756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g03060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCAGAGCTTCAAGTCCAAGGAGTATGTGAGGGAGACTTTCGCTTGGATGTACTACTACTGGTACCTCACTAACGATGGGATTGAGTTCTTGAGGAACTACCTCAACCTGCCTTCCGAGATTGTGCCCAACACTCTCAAGAAGCAGCCTAAGCCTGCTGGCCGTCCTTTCGGTGGCCCACAAGGCGACCGTCCTCGTGGCCCACCCCGCTTTGGTGATGGAGAGCGTAGATTTGGAGGTGACCGTGATGGTTACCGTGGAGGTCCTCGTGGTGGACCAGGAGGTGACTTTGGCGGTGACAAGGGAGGAGCCCCTGCTGATTACAGACCATCTTTCGGGGGTGCTCCCACAAGACCTGCCTTTGGTCGTGGTGCTGGTGGCTTTGGTGCCGGGCCAGCTAGCTCTAATCTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

139

Amino Acids

14.87

Weight (kDa)

9.86

Isoelectric Point (pI)

47.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S10_plectin	PF03501	1 - 49	9.4e-22	Plectin/S10 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	117, 364
Acc65I	GGTACC	1 cut(s)	63
AccB1I	GGYRCC	2 cut(s)	63, 386
AciI	CCGC	2 cut(s)	208, 294
AcoI	YGGCCR	1 cut(s)	160
AfaI	GTAC	2 cut(s)	53, 65
AfiI	CCNNNNNNNGG	5 cut(s)	173, 212, 272, 335, 362
AgsI	TTSAA	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	3 cut(s)	9, 398, 402
AluI	AGCT	3 cut(s)	9, 398, 402
Alw21I	GWGCWC	1 cut(s)	346
Alw26I	GTCTC	1 cut(s)	29
AoxI	GGCC	4 cut(s)	160, 175, 199, 392
ApeKI	GCWGC	1 cut(s)	145
Asp718I	GGTACC	1 cut(s)	63
AspS9I	GGNCC	5 cut(s)	176, 200, 263, 275, 392
AsuC2I	CCSGG	1 cut(s)	391
AsuHPI	GGTGA	4 cut(s)	227, 251, 296, 308
AsuNHI	GCTAGC	1 cut(s)	398
AvaII	GGWCC	2 cut(s)	263, 275
BaeGI	GKGCMC	1 cut(s)	129
BanI	GGYRCC	2 cut(s)	63, 386
BanII	GRGCYC	1 cut(s)	313
BauI	CACGAG	2 cut(s)	195, 267
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	4 cut(s)	71, 212, 242, 337
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	399
BfuAI	ACCTGC	2 cut(s)	117, 364
BglI	GCCNNNNNGGC	1 cut(s)	183
BisI	GCNGC	1 cut(s)	146
BlsI	GCNGC	1 cut(s)	147
Bme1390I	CCNGG	2 cut(s)	279, 391
Bme18I	GGWCC	2 cut(s)	263, 275
BmgT120I	GGNCC	5 cut(s)	176, 200, 263, 275, 392
BmiI	GGNNCC	3 cut(s)	65, 310, 388
BmrFI	CCNGG	2 cut(s)	279, 391
BmtI	GCTAGC	1 cut(s)	402
Bpu10I	CCTNAGC	1 cut(s)	150
BpuEI	CTTGAG	2 cut(s)	112, 122
BpuMI	CCSGG	1 cut(s)	391
BsaJI	CCNNGG	2 cut(s)	18, 256
Bsc4I	CCNNNNNNNGG	5 cut(s)	173, 212, 272, 335, 362
Bse1I	ACTGG	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	18, 256
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	5 cut(s)	173, 212, 272, 335, 362
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	321
BseSI	GKGCMC	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	157
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	4 cut(s)	162, 177, 201, 394
BshNI	GGYRCC	2 cut(s)	63, 386
BsiEI	CGRYCG	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	346
BsiSI	CCGG	1 cut(s)	390
BslI	CCNNNNNNNGG	5 cut(s)	173, 212, 272, 335, 362
BsmAI	GTCTC	1 cut(s)	29
BsnI	GGCC	4 cut(s)	162, 177, 201, 394
Bsp1286I	GDGCHC	3 cut(s)	129, 313, 346
BspACI	CCGC	2 cut(s)	208, 294
BspANI	GGCC	4 cut(s)	162, 177, 201, 394
BspLI	GGNNCC	3 cut(s)	65, 310, 388
BspMI	ACCTGC	2 cut(s)	117, 364
BspOI	GCTAGC	1 cut(s)	402
BspT107I	GGYRCC	2 cut(s)	63, 386
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	2 cut(s)	18, 256
BssSI	CACGAG	2 cut(s)	195, 267
BssT1I	CCWWGG	1 cut(s)	18
Bst2BI	CACGAG	2 cut(s)	195, 267
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	3 cut(s)	191, 245, 257
BstC8I	GCNNGC	4 cut(s)	156, 160, 396, 400
BstDEI	CTNAG	1 cut(s)	150
BstDSI	CCRYGG	1 cut(s)	256
BstEII	GGTNACC	2 cut(s)	239, 251
BstF5I	GGATG	1 cut(s)	54
BstMAI	GTCTC	1 cut(s)	29
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	4 cut(s)	151, 183, 207, 395
BstNI	CCWGG	1 cut(s)	279
BstPI	GGTNACC	2 cut(s)	239, 251
BstSCI	CCNGG	2 cut(s)	277, 389
BstSLI	GKGCMC	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	157
BsuRI	GGCC	4 cut(s)	162, 177, 201, 394
BtgI	CCRYGG	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	54
BveI	ACCTGC	2 cut(s)	117, 364
Cac8I	GCNNGC	4 cut(s)	156, 160, 396, 400
Cfr13I	GGNCC	5 cut(s)	176, 200, 263, 275, 392
Csp6I	GTAC	2 cut(s)	52, 64
CviQI	GTAC	2 cut(s)	52, 64
DdeI	CTNAG	1 cut(s)	150
EaeI	YGGCCR	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	313
Eco47I	GGWCC	2 cut(s)	263, 275
Eco91I	GGTNACC	2 cut(s)	239, 251
EcoO109I	RGGNCCY	1 cut(s)	263
EcoO65I	GGTNACC	2 cut(s)	239, 251
EcoRII	CCWGG	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	18
EcoT38I	GRGCYC	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	18
FaiI	YATR	1 cut(s)	27
FauI	CCCGC	1 cut(s)	215
Fnu4HI	GCNGC	1 cut(s)	146
FokI	GGATG	1 cut(s)	61
FriOI	GRGCYC	1 cut(s)	313
Fsp4HI	GCNGC	1 cut(s)	146
FspBI	CTAG	1 cut(s)	399
GluI	GCNGC	1 cut(s)	146
HaeIII	GGCC	4 cut(s)	162, 177, 201, 394
HapII	CCGG	1 cut(s)	390
HpaII	CCGG	1 cut(s)	390
HphI	GGTGA	4 cut(s)	227, 251, 296, 308
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	2 cut(s)	91, 139
Hpy8I	GTNNAC	1 cut(s)	275
HpyAV	CCTTC	1 cut(s)	123
HpyCH4III	ACNGT	3 cut(s)	191, 245, 257
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	4 cut(s)	151, 183, 207, 395
HpyF3I	CTNAG	1 cut(s)	150
KpnI	GGTACC	1 cut(s)	67
LmnI	GCTCC	2 cut(s)	308, 349
Lsp1109I	GCAGC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	399
MaeIII	GTNAC	4 cut(s)	239, 251, 284, 296
MhlI	GDGCHC	3 cut(s)	129, 313, 346
MseI	TTAA	1 cut(s)	415
MspI	CCGG	1 cut(s)	390
MspR9I	CCNGG	2 cut(s)	279, 391
MvaI	CCWGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	4 cut(s)	151, 183, 207, 395
NciI	CCSGG	1 cut(s)	391
NheI	GCTAGC	1 cut(s)	398
NlaIV	GGNNCC	3 cut(s)	65, 310, 388
NmuCI	GTSAC	3 cut(s)	239, 284, 296
PkrI	GCNGC	1 cut(s)	147
PpuMI	RGGWCCY	1 cut(s)	263
Psp5II	RGGWCCY	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	277
PspEI	GGTNACC	2 cut(s)	239, 251
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	3 cut(s)	65, 310, 388
PspPI	GGNCC	5 cut(s)	176, 200, 263, 275, 392
PspPPI	RGGWCCY	1 cut(s)	263
RsaI	GTAC	2 cut(s)	53, 65
RsaNI	GTAC	2 cut(s)	52, 64
SaqAI	TTAA	1 cut(s)	415
SatI	GCNGC	1 cut(s)	146
Sau96I	GGNCC	5 cut(s)	176, 200, 263, 275, 392
ScrFI	CCNGG	2 cut(s)	279, 391
SduI	GDGCHC	3 cut(s)	129, 313, 346
SinI	GGWCC	2 cut(s)	263, 275
SmlI	CTYRAG	2 cut(s)	91, 137
SmoI	CTYRAG	2 cut(s)	91, 137
SsiI	CCGC	2 cut(s)	208, 294
SspMI	CTAG	1 cut(s)	399
StyD4I	CCNGG	2 cut(s)	277, 389
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	3 cut(s)	191, 245, 257
TatI	WGTACW	1 cut(s)	51
Tru1I	TTAA	1 cut(s)	415
Tru9I	TTAA	1 cut(s)	415
TseFI	GTSAC	3 cut(s)	239, 284, 296
TseI	GCWGC	1 cut(s)	145
Tsp45I	GTSAC	3 cut(s)	239, 284, 296
VpaK11BI	GGWCC	2 cut(s)	263, 275
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.