Rroxscaffold_3G00259000
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001582
Physical Location & Seq
Reverse (-)
53387635 .. 53389579
1945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00259000.1

Sequence Viewer

Length: 552 bp
ATGATCATTTCAGAGAAGAACCGCCGCGAGATCTCCAAGTACCTCTTCCAAGAGGGAGTGTGCTATGCGAAGAAGGACTACAACATGCCGAAGCATCCAGAGATCGATGTGCCGAATCTGCAGGTGATTAAGCTGATGCAGAGCTTCAAGTCCAAGGAGTATGTGAGGGAGACCTTCGCCTGGATGCACTATTACTGGTACCTCACCAATGATGGCATTGAGTTCTTGAGGAACTACCTCAACCTGCCATCGGAGATTGTGCCCAACACTCTCAAGAAGCAGGCTAAGCCCGCCGGCCGTCCTTTCGGCGGCCCACCAGGCGACCGCCCTCGTGGCCCACCTCGCTTTGGTGATGGAGAGCGCAGATTTGGAGGTGACCGTGATGGTTACCGTGGAGGTCCTCGTGGTGGACCAGGAGGTGACTTTGGCGGTGACAAGGGAGGAGCCCCTGCTGACTACAGACCTTCTTTCGGGGGTGCTCCAACAAGACCTGCCTTCGGTCGTGGAGCTGGTGGTTTTGGTGCAGGCCCAGCTAGCTCTAATCTCTCTTAA

Protein Analysis

183

Amino Acids

20.15

Weight (kDa)

9.68

Isoelectric Point (pI)

54.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S10_plectin PF03501 3 - 94 1.7e-43 Plectin/S10 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
Acc36I ACCTGC 3 cut(s) 112, 252, 499
Acc65I GGTACC 1 cut(s) 198
AccB1I GGYRCC 1 cut(s) 198
AccII CGCG 1 cut(s) 27
AciI CCGC 6 cut(s) 22, 25, 291, 309, 325, 429
AcoI YGGCCR 1 cut(s) 295
AfaI GTAC 2 cut(s) 41, 200
AfiI CCNNNNNNNGG 7 cut(s) 180, 250, 308, 347, 407, 470, 497
AgsI TTSAA 1 cut(s) 148
AjnI CCWGG 3 cut(s) 179, 316, 412
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AluBI AGCT 5 cut(s) 133, 144, 509, 533, 537
AluI AGCT 5 cut(s) 133, 144, 509, 533, 537
Alw21I GWGCWC 1 cut(s) 481
Alw26I GTCTC 1 cut(s) 164
AoxI GGCC 4 cut(s) 295, 310, 334, 526
Asp718I GGTACC 1 cut(s) 198
AspLEI GCGC 1 cut(s) 363
AspS9I GGNCC 5 cut(s) 311, 335, 398, 410, 527
AsuHPI GGTGA 6 cut(s) 136, 196, 362, 386, 431, 443
AsuNHI GCTAGC 1 cut(s) 533
AvaII GGWCC 2 cut(s) 398, 410
BaeGI GKGCMC 1 cut(s) 264
BanI GGYRCC 1 cut(s) 198
BanII GRGCYC 1 cut(s) 448
BarI GAAGNNNNNNTAC 2 cut(s) 62, 94
BauI CACGAG 2 cut(s) 330, 402
Bbv12I GWGCWC 1 cut(s) 481
BccI CCATC 4 cut(s) 206, 256, 347, 377
BceAI ACGGC 1 cut(s) 282
BciT130I CCWGG 3 cut(s) 181, 318, 414
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 1 cut(s) 534
BfmI CTRYAG 2 cut(s) 119, 457
BfuAI ACCTGC 3 cut(s) 112, 252, 499
BglI GCCNNNNNGGC 2 cut(s) 318, 333
BglII AGATCT 1 cut(s) 30
BisI GCNGC 2 cut(s) 25, 310
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 2 cut(s) 26, 311
Bme1390I CCNGG 3 cut(s) 181, 318, 414
Bme18I GGWCC 2 cut(s) 398, 410
BmgT120I GGNCC 5 cut(s) 311, 335, 398, 410, 527
BmiI GGNNCC 2 cut(s) 200, 445
BmrFI CCNGG 3 cut(s) 181, 318, 414
BmsI GCATC 3 cut(s) 103, 126, 174
BmtI GCTAGC 1 cut(s) 537
Bpu1102I GCTNAGC 1 cut(s) 285
BpuEI CTTGAG 2 cut(s) 247, 257
Bsa29I ATCGAT 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 2 cut(s) 153, 391
Bsc4I CCNNNNNNNGG 7 cut(s) 180, 250, 308, 347, 407, 470, 497
Bse118I RCCGGY 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 200
BseBI CCWGG 3 cut(s) 181, 318, 414
BseCI ATCGAT 1 cut(s) 105
BseDI CCNNGG 2 cut(s) 153, 391
BseGI GGATG 2 cut(s) 94, 189
BseLI CCNNNNNNNGG 7 cut(s) 180, 250, 308, 347, 407, 470, 497
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 1 cut(s) 456
BseSI GKGCMC 1 cut(s) 264
BseX3I CGGCCG 1 cut(s) 295
BseYI CCCAGC 1 cut(s) 529
BsgI GTGCAG 1 cut(s) 543
Bsh1236I CGCG 1 cut(s) 27
Bsh1285I CGRYCG 3 cut(s) 298, 325, 502
BshFI GGCC 4 cut(s) 297, 312, 336, 528
BshNI GGYRCC 1 cut(s) 198
BshVI ATCGAT 1 cut(s) 105
BsiEI CGRYCG 3 cut(s) 298, 325, 502
BsiHKAI GWGCWC 1 cut(s) 481
BsiSI CCGG 1 cut(s) 294
BslI CCNNNNNNNGG 7 cut(s) 180, 250, 308, 347, 407, 470, 497
BsmAI GTCTC 1 cut(s) 164
BsnI GGCC 4 cut(s) 297, 312, 336, 528
Bso31I GGTCTC 1 cut(s) 164
Bsp1286I GDGCHC 3 cut(s) 264, 448, 481
Bsp143I GATC 3 cut(s) 3, 30, 102
Bsp1720I GCTNAGC 1 cut(s) 285
BspACI CCGC 6 cut(s) 22, 25, 291, 309, 325, 429
BspANI GGCC 4 cut(s) 297, 312, 336, 528
BspDI ATCGAT 1 cut(s) 105
BspFNI CGCG 1 cut(s) 27
BspLI GGNNCC 2 cut(s) 200, 445
BspMAI CTGCAG 1 cut(s) 123
BspMI ACCTGC 3 cut(s) 112, 252, 499
BspOI GCTAGC 1 cut(s) 537
BspT107I GGYRCC 1 cut(s) 198
BspTNI GGTCTC 1 cut(s) 164
BsrFI RCCGGY 1 cut(s) 293
BsrI ACTGG 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 2 cut(s) 153, 391
BssMI GATC 3 cut(s) 3, 30, 102
BssSI CACGAG 2 cut(s) 330, 402
BssT1I CCWWGG 1 cut(s) 153
Bst2BI CACGAG 2 cut(s) 330, 402
Bst2UI CCWGG 3 cut(s) 181, 318, 414
Bst4CI ACNGT 2 cut(s) 380, 392
Bst6I CTCTTC 1 cut(s) 50
BstC8I GCNNGC 5 cut(s) 282, 291, 295, 526, 535
BstDEI CTNAG 1 cut(s) 285
BstDSI CCRYGG 1 cut(s) 391
BstEII GGTNACC 2 cut(s) 374, 386
BstF5I GGATG 2 cut(s) 94, 189
BstFNI CGCG 1 cut(s) 27
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 3 cut(s) 6, 33, 105
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 3 cut(s) 3, 30, 102
BstMCI CGRYCG 3 cut(s) 298, 325, 502
BstMWI GCNNNNNNNGC 8 cut(s) 118, 286, 290, 318, 333, 342, 530, 534
BstNI CCWGG 3 cut(s) 181, 318, 414
BstNSI RCATGY 1 cut(s) 88
BstPI GGTNACC 2 cut(s) 374, 386
BstSCI CCNGG 3 cut(s) 179, 316, 412
BstSFI CTRYAG 2 cut(s) 119, 457
BstSLI GKGCMC 1 cut(s) 264
BstUI CGCG 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BstZI CGGCCG 1 cut(s) 295
Bsu15I ATCGAT 1 cut(s) 105
BsuRI GGCC 4 cut(s) 297, 312, 336, 528
BsuTUI ATCGAT 1 cut(s) 105
BtgI CCRYGG 1 cut(s) 391
BtsCI GGATG 2 cut(s) 94, 189
BveI ACCTGC 3 cut(s) 112, 252, 499
Cac8I GCNNGC 5 cut(s) 282, 291, 295, 526, 535
CfoI GCGC 1 cut(s) 363
Cfr10I RCCGGY 1 cut(s) 293
Cfr13I GGNCC 5 cut(s) 311, 335, 398, 410, 527
ClaI ATCGAT 1 cut(s) 105
Csp6I GTAC 2 cut(s) 40, 199
CviAII CATG 1 cut(s) 85
CviQI GTAC 2 cut(s) 40, 199
DdeI CTNAG 1 cut(s) 285
DpnI GATC 3 cut(s) 5, 32, 104
DpnII GATC 3 cut(s) 3, 30, 102
EaeI YGGCCR 1 cut(s) 295
EagI CGGCCG 1 cut(s) 295
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
EclXI CGGCCG 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 448
Eco31I GGTCTC 1 cut(s) 164
Eco47I GGWCC 2 cut(s) 398, 410
Eco52I CGGCCG 1 cut(s) 295
Eco91I GGTNACC 2 cut(s) 374, 386
EcoO109I RGGNCCY 1 cut(s) 398
EcoO65I GGTNACC 2 cut(s) 374, 386
EcoRII CCWGG 3 cut(s) 179, 316, 412
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 1 cut(s) 88
FaiI YATR 3 cut(s) 66, 86, 162
FalI AAGNNNNNCTT 2 cut(s) 29, 61
FatI CATG 1 cut(s) 84
FauI CCCGC 1 cut(s) 298
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 25, 310
FokI GGATG 2 cut(s) 81, 196
FriOI GRGCYC 1 cut(s) 448
Fsp4HI GCNGC 2 cut(s) 25, 310
FspBI CTAG 1 cut(s) 534
GlaI GCGC 1 cut(s) 362
GluI GCNGC 2 cut(s) 25, 310
GsaI CCCAGC 1 cut(s) 533
HaeIII GGCC 4 cut(s) 297, 312, 336, 528
HapII CCGG 1 cut(s) 294
HhaI GCGC 1 cut(s) 363
Hin1II CATG 1 cut(s) 88
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HinfI GANTC 1 cut(s) 115
HpaII CCGG 1 cut(s) 294
HphI GGTGA 6 cut(s) 136, 196, 362, 386, 431, 443
Hpy166II GTNNAC 1 cut(s) 410
Hpy188I TCNGA 2 cut(s) 13, 253
Hpy188III TCNNGA 3 cut(s) 98, 226, 274
Hpy8I GTNNAC 1 cut(s) 410
HpyAV CCTTC 4 cut(s) 67, 184, 474, 505
HpyCH4III ACNGT 2 cut(s) 380, 392
HpyCH4V TGCA 4 cut(s) 121, 139, 187, 524
HpyF10VI GCNNNNNNNGC 8 cut(s) 118, 286, 290, 318, 333, 342, 530, 534
HpyF3I CTNAG 1 cut(s) 285
Hsp92II CATG 1 cut(s) 88
HspAI GCGC 1 cut(s) 361
KpnI GGTACC 1 cut(s) 202
KroI GCCGGC 1 cut(s) 293
KroNI GCCGGC 1 cut(s) 295
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 30, 102
LmnI GCTCC 3 cut(s) 443, 484, 506
LweI GCATC 3 cut(s) 103, 126, 174
MaeI CTAG 1 cut(s) 534
MaeIII GTNAC 4 cut(s) 374, 386, 419, 431
MalI GATC 3 cut(s) 5, 32, 104
MboI GATC 3 cut(s) 3, 30, 102
MboII GAAGA 3 cut(s) 28, 37, 82
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 3 cut(s) 264, 448, 481
MmeI TCCRAC 1 cut(s) 506
MroNI GCCGGC 1 cut(s) 293
MseI TTAA 2 cut(s) 129, 550
MspI CCGG 1 cut(s) 294
MspR9I CCNGG 3 cut(s) 181, 318, 414
MvaI CCWGG 3 cut(s) 181, 318, 414
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 8 cut(s) 118, 286, 290, 318, 333, 342, 530, 534
NaeI GCCGGC 1 cut(s) 295
NdeII GATC 3 cut(s) 3, 30, 102
NgoMIV GCCGGC 1 cut(s) 293
NheI GCTAGC 1 cut(s) 533
NlaIII CATG 1 cut(s) 88
NlaIV GGNNCC 2 cut(s) 200, 445
NmuCI GTSAC 3 cut(s) 374, 419, 431
NspI RCATGY 1 cut(s) 88
PaqCI CACCTGC 1 cut(s) 112
PdiI GCCGGC 1 cut(s) 295
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 2 cut(s) 26, 311
PpuMI RGGWCCY 1 cut(s) 398
Psp5II RGGWCCY 1 cut(s) 398
Psp6I CCWGG 3 cut(s) 179, 316, 412
PspEI GGTNACC 2 cut(s) 374, 386
PspFI CCCAGC 1 cut(s) 529
PspGI CCWGG 3 cut(s) 179, 316, 412
PspN4I GGNNCC 2 cut(s) 200, 445
PspPI GGNCC 5 cut(s) 311, 335, 398, 410, 527
PspPPI RGGWCCY 1 cut(s) 398
PstI CTGCAG 1 cut(s) 123
PsuI RGATCY 1 cut(s) 30
RsaI GTAC 2 cut(s) 41, 200
RsaNI GTAC 2 cut(s) 40, 199
SaqAI TTAA 2 cut(s) 129, 550
SatI GCNGC 2 cut(s) 25, 310
Sau3AI GATC 3 cut(s) 3, 30, 102
Sau96I GGNCC 5 cut(s) 311, 335, 398, 410, 527
ScrFI CCNGG 3 cut(s) 181, 318, 414
SduI GDGCHC 3 cut(s) 264, 448, 481
SfaNI GCATC 3 cut(s) 103, 126, 174
SfcI CTRYAG 2 cut(s) 119, 457
SinI GGWCC 2 cut(s) 398, 410
SmlI CTYRAG 2 cut(s) 226, 272
SmoI CTYRAG 2 cut(s) 226, 272
SsiI CCGC 6 cut(s) 22, 25, 291, 309, 325, 429
SspMI CTAG 1 cut(s) 534
StyD4I CCNGG 3 cut(s) 179, 316, 412
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 2 cut(s) 380, 392
TaqI TCGA 1 cut(s) 105
TaqII GACCGA 1 cut(s) 488
TauI GCSGC 2 cut(s) 27, 312
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 2 cut(s) 129, 550
Tru9I TTAA 2 cut(s) 129, 550
TseFI GTSAC 3 cut(s) 374, 419, 431
Tsp45I GTSAC 3 cut(s) 374, 419, 431
VpaK11BI GGWCC 2 cut(s) 398, 410
XceI RCATGY 1 cut(s) 88
XspI CTAG 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.