Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Reverse (-)

21355541 .. 21357219

Gene Structure 1679 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G52650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGATTATCTCAGAGGCTAACCGCAAAGAAATCTGCAAGTACCTCTTCAAAGAAGGAGTTTGCTTTGCGAAGAAGGATTTCAATCTTGCTAAGCATCCGTTGATCGATGTCCCCAACCTACAAGTGATTAAGCTTATGCAGAGTTTCAAATCCAAGGAGTATGTTAGGGAGACATTTGCCTGGATGCATTACTATTGGTTTTTGACCAATGAAGGGATCGAGTTCTTGAGAACTTATCTTAATCTTCCATCTGATGTTGTTCCTGCTACTTTGAAGAAGTCAGCTAAGCCTGGTGGTCGTCCATTTGGTGGCCCACCTGGTGATCGCTCAAGAGGACCTCGCCATGAAGGAGGAGACCGTCCCAGGTTTGGTGACCGTGATGGGTACCGTGCAGGTCCTCGAGCTGGTGGTGAGTTTGGAGGTGAAAAGGGTGGAGCTCCCGCAGATTACCAGCCATCTTTCCAAGGAAGTGGCCGTGGTTTTGGCCGTGGTGCTGGTGGCTACAGCGCAGCTGCACCATCTGGTTCAGGTTTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0001763 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009653 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010252 GO:0010346 GO:0015935 GO:0016020 GO:0016043 GO:0022603 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030312 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042592 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048367 GO:0048507 GO:0048532 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0051239 GO:0060688 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0090506 GO:0097159 GO:1900618 GO:1901363 GO:1905393 GO:1905428 GO:1990904 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

S10_plectin

Protein Analysis

179

Amino Acids

19.55

Weight (kDa)

9.63

Isoelectric Point (pI)

39.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S10_plectin	PF03501	3 - 94	1.9e-42	Plectin/S10 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	383
Acc65I	GGTACC	1 cut(s)	384
AccB1I	GGYRCC	1 cut(s)	384
AccB7I	CCANNNNNTGG	1 cut(s)	308
AciI	CCGC	2 cut(s)	22, 441
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	2 cut(s)	472, 484
AdeI	CACNNNGTG	1 cut(s)	320
AfaI	GTAC	2 cut(s)	41, 386
AfiI	CCNNNNNNNGG	4 cut(s)	213, 308, 368, 404
AgsI	TTSAA	4 cut(s)	49, 82, 148, 274
AjnI	CCWGG	4 cut(s)	179, 289, 316, 362
AluBI	AGCT	5 cut(s)	133, 284, 404, 437, 512
AluI	AGCT	5 cut(s)	133, 284, 404, 437, 512
Alw21I	GWGCWC	1 cut(s)	439
Alw26I	GTCTC	2 cut(s)	164, 348
AlwI	GGATC	1 cut(s)	224
Ama87I	CYCGRG	1 cut(s)	399
AoxI	GGCC	3 cut(s)	310, 472, 484
ApeKI	GCWGC	2 cut(s)	509, 512
Asp700I	GAANNNNTTC	1 cut(s)	77
Asp718I	GGTACC	1 cut(s)	384
AspLEI	GCGC	1 cut(s)	509
AspS9I	GGNCC	3 cut(s)	311, 335, 395
AsuHPI	GGTGA	4 cut(s)	332, 383, 422, 434
AvaI	CYCGRG	1 cut(s)	399
AvaII	GGWCC	2 cut(s)	335, 395
BanI	GGYRCC	1 cut(s)	384
BanII	GRGCYC	1 cut(s)	439
Bbv12I	GWGCWC	1 cut(s)	439
BbvI	GCAGC	2 cut(s)	499, 521
BccI	CCATC	4 cut(s)	256, 374, 463, 526
BceAI	ACGGC	2 cut(s)	459, 471
BciT130I	CCWGG	4 cut(s)	181, 291, 318, 364
BcoDI	GTCTC	2 cut(s)	164, 348
BfmI	CTRYAG	1 cut(s)	502
BfuAI	ACCTGC	1 cut(s)	383
BisI	GCNGC	2 cut(s)	510, 513
BlpI	GCTNAGC	2 cut(s)	90, 285
BlsI	GCNGC	2 cut(s)	511, 514
Bme1390I	CCNGG	4 cut(s)	181, 291, 318, 364
Bme18I	GGWCC	2 cut(s)	335, 395
BmeT110I	CYCGRG	1 cut(s)	399
BmgT120I	GGNCC	3 cut(s)	311, 335, 395
BmiI	GGNNCC	1 cut(s)	386
BmrFI	CCNGG	4 cut(s)	181, 291, 318, 364
BmsI	GCATC	2 cut(s)	103, 174
Bpu1102I	GCTNAGC	2 cut(s)	90, 285
BpuEI	CTTGAG	2 cut(s)	247, 313
Bsa29I	ATCGAT	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	81
BsaI	GGTCTC	1 cut(s)	348
BsaJI	CCNNGG	5 cut(s)	153, 362, 463, 475, 487
Bsc4I	CCNNNNNNNGG	4 cut(s)	213, 308, 368, 404
Bse8I	GATNNNNATC	1 cut(s)	81
BseBI	CCWGG	4 cut(s)	181, 291, 318, 364
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	5 cut(s)	153, 362, 463, 475, 487
BseGI	GGATG	2 cut(s)	94, 189
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	4 cut(s)	213, 308, 368, 404
BseMII	CTCAG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	366
BseXI	GCAGC	2 cut(s)	499, 521
BsgI	GTGCAG	2 cut(s)	411, 498
BshFI	GGCC	3 cut(s)	312, 474, 486
BshNI	GGYRCC	1 cut(s)	384
BshVI	ATCGAT	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	439
BsiHKCI	CYCGRG	1 cut(s)	399
BslFI	GGGAC	2 cut(s)	95, 345
BslI	CCNNNNNNNGG	4 cut(s)	213, 308, 368, 404
BsmAI	GTCTC	2 cut(s)	164, 348
BsmFI	GGGAC	2 cut(s)	95, 345
BsnI	GGCC	3 cut(s)	312, 474, 486
Bso31I	GGTCTC	1 cut(s)	348
BsoBI	CYCGRG	1 cut(s)	399
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp143I	GATC	3 cut(s)	102, 216, 322
Bsp1720I	GCTNAGC	2 cut(s)	90, 285
BspACI	CCGC	2 cut(s)	22, 441
BspANI	GGCC	3 cut(s)	312, 474, 486
BspCNI	CTCAG	1 cut(s)	23
BspDI	ATCGAT	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	386
BspMI	ACCTGC	1 cut(s)	383
BspPI	GGATC	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	384
BspTNI	GGTCTC	1 cut(s)	348
BssECI	CCNNGG	5 cut(s)	153, 362, 463, 475, 487
BssMI	GATC	3 cut(s)	102, 216, 322
BssT1I	CCWWGG	2 cut(s)	153, 463
Bst2UI	CCWGG	4 cut(s)	181, 291, 318, 364
Bst4CI	ACNGT	3 cut(s)	359, 377, 389
Bst6I	CTCTTC	1 cut(s)	50
BstDEI	CTNAG	3 cut(s)	10, 90, 285
BstDSI	CCRYGG	2 cut(s)	475, 487
BstEII	GGTNACC	1 cut(s)	371
BstF5I	GGATG	2 cut(s)	94, 189
BstHHI	GCGC	1 cut(s)	509
BstKTI	GATC	3 cut(s)	105, 219, 325
BstMAI	GTCTC	2 cut(s)	164, 348
BstMBI	GATC	3 cut(s)	102, 216, 322
BstNI	CCWGG	4 cut(s)	181, 291, 318, 364
BstPI	GGTNACC	1 cut(s)	371
BstSCI	CCNGG	4 cut(s)	179, 289, 316, 362
BstSFI	CTRYAG	1 cut(s)	502
BstV1I	GCAGC	2 cut(s)	499, 521
BstXI	CCANNNNNNTGG	1 cut(s)	470
Bsu15I	ATCGAT	1 cut(s)	105
BsuRI	GGCC	3 cut(s)	312, 474, 486
BsuTUI	ATCGAT	1 cut(s)	105
BtgI	CCRYGG	2 cut(s)	475, 487
BtsCI	GGATG	2 cut(s)	94, 189
BveI	ACCTGC	1 cut(s)	383
CfoI	GCGC	1 cut(s)	509
Cfr13I	GGNCC	3 cut(s)	311, 335, 395
ClaI	ATCGAT	1 cut(s)	105
CsiI	ACCWGGT	1 cut(s)	316
Csp6I	GTAC	2 cut(s)	40, 385
CviAII	CATG	1 cut(s)	344
CviQI	GTAC	2 cut(s)	40, 385
DdeI	CTNAG	3 cut(s)	10, 90, 285
DpnI	GATC	3 cut(s)	104, 218, 324
DpnII	GATC	3 cut(s)	102, 216, 322
DraIII	CACNNNGTG	1 cut(s)	320
EaeI	YGGCCR	2 cut(s)	472, 484
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Ecl136II	GAGCTC	1 cut(s)	437
Eco130I	CCWWGG	2 cut(s)	153, 463
Eco24I	GRGCYC	1 cut(s)	439
Eco31I	GGTCTC	1 cut(s)	348
Eco47I	GGWCC	2 cut(s)	335, 395
Eco53kI	GAGCTC	1 cut(s)	437
Eco88I	CYCGRG	1 cut(s)	399
Eco91I	GGTNACC	1 cut(s)	371
EcoICRI	GAGCTC	1 cut(s)	437
EcoO109I	RGGNCCY	2 cut(s)	335, 395
EcoO65I	GGTNACC	1 cut(s)	371
EcoRII	CCWGG	4 cut(s)	179, 289, 316, 362
EcoT14I	CCWWGG	2 cut(s)	153, 463
EcoT22I	ATGCAT	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	439
ErhI	CCWWGG	2 cut(s)	153, 463
FaeI	CATG	1 cut(s)	347
FaiI	YATR	3 cut(s)	137, 162, 345
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FaqI	GGGAC	2 cut(s)	95, 345
FatI	CATG	1 cut(s)	343
FauI	CCCGC	1 cut(s)	448
Fnu4HI	GCNGC	2 cut(s)	510, 513
FokI	GGATG	2 cut(s)	81, 196
FriOI	GRGCYC	1 cut(s)	439
Fsp4HI	GCNGC	2 cut(s)	510, 513
GlaI	GCGC	1 cut(s)	508
GluI	GCNGC	2 cut(s)	510, 513
HaeIII	GGCC	3 cut(s)	312, 474, 486
HhaI	GCGC	1 cut(s)	509
Hin1II	CATG	1 cut(s)	347
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HindIII	AAGCTT	1 cut(s)	131
HphI	GGTGA	4 cut(s)	332, 383, 422, 434
Hpy188I	TCNGA	2 cut(s)	13, 253
Hpy188III	TCNNGA	2 cut(s)	226, 330
HpyAV	CCTTC	4 cut(s)	47, 67, 206, 341
HpyCH4III	ACNGT	3 cut(s)	359, 377, 389
HpyCH4V	TGCA	5 cut(s)	36, 139, 187, 392, 515
HpyF3I	CTNAG	3 cut(s)	10, 90, 285
Hsp92II	CATG	1 cut(s)	347
HspAI	GCGC	1 cut(s)	507
KpnI	GGTACC	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	102, 216, 322
LmnI	GCTCC	2 cut(s)	434, 442
Lsp1109I	GCAGC	2 cut(s)	499, 521
LweI	GCATC	2 cut(s)	103, 174
MabI	ACCWGGT	1 cut(s)	316
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	3 cut(s)	104, 218, 324
MboI	GATC	3 cut(s)	102, 216, 322
MboII	GAAGA	4 cut(s)	37, 82, 236, 286
MhlI	GDGCHC	1 cut(s)	439
MnlI	CCTC	7 cut(s)	7, 53, 326, 344, 348, 408, 413
Mph1103I	ATGCAT	1 cut(s)	189
MroXI	GAANNNNTTC	1 cut(s)	77
MseI	TTAA	2 cut(s)	129, 240
MspA1I	CMGCKG	1 cut(s)	512
MspR9I	CCNGG	4 cut(s)	181, 291, 318, 364
MvaI	CCWGG	4 cut(s)	181, 291, 318, 364
NdeII	GATC	3 cut(s)	102, 216, 322
NlaIII	CATG	1 cut(s)	347
NlaIV	GGNNCC	1 cut(s)	386
NmuCI	GTSAC	1 cut(s)	371
NsiI	ATGCAT	1 cut(s)	189
PaeR7I	CTCGAG	1 cut(s)	399
PdmI	GAANNNNTTC	1 cut(s)	77
PflMI	CCANNNNNTGG	1 cut(s)	308
PkrI	GCNGC	2 cut(s)	511, 514
PpuMI	RGGWCCY	2 cut(s)	335, 395
Psp124BI	GAGCTC	1 cut(s)	439
Psp5II	RGGWCCY	2 cut(s)	335, 395
Psp6I	CCWGG	4 cut(s)	179, 289, 316, 362
PspEI	GGTNACC	1 cut(s)	371
PspGI	CCWGG	4 cut(s)	179, 289, 316, 362
PspN4I	GGNNCC	1 cut(s)	386
PspPI	GGNCC	3 cut(s)	311, 335, 395
PspPPI	RGGWCCY	2 cut(s)	335, 395
PspXI	VCTCGAGB	1 cut(s)	399
PvuII	CAGCTG	1 cut(s)	512
RsaI	GTAC	2 cut(s)	41, 386
RsaNI	GTAC	2 cut(s)	40, 385
SacI	GAGCTC	1 cut(s)	439
SaqAI	TTAA	2 cut(s)	129, 240
SatI	GCNGC	2 cut(s)	510, 513
Sau3AI	GATC	3 cut(s)	102, 216, 322
Sau96I	GGNCC	3 cut(s)	311, 335, 395
ScrFI	CCNGG	4 cut(s)	181, 291, 318, 364
SduI	GDGCHC	1 cut(s)	439
SexAI	ACCWGGT	1 cut(s)	316
SfaNI	GCATC	2 cut(s)	103, 174
SfcI	CTRYAG	1 cut(s)	502
Sfr274I	CTCGAG	1 cut(s)	399
SinI	GGWCC	2 cut(s)	335, 395
SlaI	CTCGAG	1 cut(s)	399
SmlI	CTYRAG	3 cut(s)	226, 328, 399
SmoI	CTYRAG	3 cut(s)	226, 328, 399
SsiI	CCGC	2 cut(s)	22, 441
SstI	GAGCTC	1 cut(s)	439
StyD4I	CCNGG	4 cut(s)	179, 289, 316, 362
StyI	CCWWGG	2 cut(s)	153, 463
TaaI	ACNGT	3 cut(s)	359, 377, 389
TaqI	TCGA	3 cut(s)	105, 219, 400
Tru1I	TTAA	2 cut(s)	129, 240
Tru9I	TTAA	2 cut(s)	129, 240
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	2 cut(s)	509, 512
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	2 cut(s)	225, 360
TspGWI	ACGGA	1 cut(s)	87
Van91I	CCANNNNNTGG	1 cut(s)	308
VpaK11BI	GGWCC	2 cut(s)	335, 395
XhoI	CTCGAG	1 cut(s)	399
XmnI	GAANNNNTTC	1 cut(s)	77
Zsp2I	ATGCAT	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.