Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Forward (+)

14874694 .. 14874993

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00294970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGATCATTTCAGAGAAGAACCACCGCGAGATCTCCAAGTACCTCTTCCAAGAGGGAGTGTGCTATGCGAAGAAGGACTACAACATGCCAAAGCATCCAGAGTTCGATGTGCAGAATCTGCAGGTGATTAAGCTGATGCAGGGCTTCAAGTCCAAGGAGTATGCGAGGGAGACCTTCACCTGGATGCACTATTACTGGTACCTCACCAGTGATGGCATTGAGTTCTTGAGGAACTACCTCAACCTGCCATCGGAGATTGTGCCCAACACTCTCAAGAAGCAGGCTAAGCCCGCCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0001763 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009653 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010252 GO:0010346 GO:0015935 GO:0016043 GO:0022603 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030312 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042592 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048367 GO:0048507 GO:0048532 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0051239 GO:0060688 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0090506 GO:0097159 GO:1900618 GO:1901363 GO:1905393 GO:1905428 GO:1990904 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

S10_plectin

Protein Analysis

99

Amino Acids

11.87

Weight (kDa)

8.95

Isoelectric Point (pI)

56.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S10_plectin	PF03501	3 - 94	1.8e-40	Plectin/S10 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	112
Acc36I	ACCTGC	2 cut(s)	112, 252
Acc65I	GGTACC	1 cut(s)	198
AccB1I	GGYRCC	1 cut(s)	198
AccII	CGCG	1 cut(s)	27
AciI	CCGC	2 cut(s)	25, 291
AfaI	GTAC	2 cut(s)	41, 200
AfiI	CCNNNNNNNGG	2 cut(s)	180, 250
AgsI	TTSAA	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	179
AjuI	GAANNNNNNNTTGG	2 cut(s)	29, 61
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	164
AlwNI	CAGNNNCTG	1 cut(s)	118
Asp718I	GGTACC	1 cut(s)	198
AsuHPI	GGTGA	3 cut(s)	136, 169, 196
BaeGI	GKGCMC	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	198
BarI	GAAGNNNNNNTAC	2 cut(s)	62, 94
BccI	CCATC	2 cut(s)	206, 256
BciT130I	CCWGG	1 cut(s)	181
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	298
BfmI	CTRYAG	1 cut(s)	119
BfuAI	ACCTGC	2 cut(s)	112, 252
BglII	AGATCT	1 cut(s)	30
BlpI	GCTNAGC	1 cut(s)	285
Bme1390I	CCNGG	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	181
BmsI	GCATC	3 cut(s)	103, 126, 174
Bpu1102I	GCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	2 cut(s)	247, 257
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 250
Bse118I	RCCGGY	1 cut(s)	293
Bse1I	ACTGG	2 cut(s)	200, 207
BseBI	CCWGG	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	2 cut(s)	94, 189
BseLI	CCNNNNNNNGG	2 cut(s)	180, 250
BseNI	ACTGG	2 cut(s)	200, 207
BseSI	GKGCMC	1 cut(s)	264
BsgI	GTGCAG	1 cut(s)	131
Bsh1236I	CGCG	1 cut(s)	27
BshNI	GGYRCC	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	294
BslI	CCNNNNNNNGG	2 cut(s)	180, 250
BsmAI	GTCTC	1 cut(s)	164
Bso31I	GGTCTC	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	2 cut(s)	3, 30
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	2 cut(s)	25, 291
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	200
BspMAI	CTGCAG	1 cut(s)	123
BspMI	ACCTGC	2 cut(s)	112, 252
BspT107I	GGYRCC	1 cut(s)	198
BspTNI	GGTCTC	1 cut(s)	164
BsrFI	RCCGGY	1 cut(s)	293
BsrI	ACTGG	2 cut(s)	200, 207
BssAI	RCCGGY	1 cut(s)	293
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	2 cut(s)	3, 30
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	50
BstAPI	GCANNNNNTGC	1 cut(s)	118
BstC8I	GCNNGC	3 cut(s)	282, 291, 295
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	2 cut(s)	94, 189
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	2 cut(s)	6, 33
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	2 cut(s)	3, 30
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 286, 290
BstNI	CCWGG	1 cut(s)	181
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	179
BstSFI	CTRYAG	1 cut(s)	119
BstSLI	GKGCMC	1 cut(s)	264
BstUI	CGCG	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BtsCI	GGATG	2 cut(s)	94, 189
BtsIMutI	CAGTG	1 cut(s)	214
BveI	ACCTGC	2 cut(s)	112, 252
Cac8I	GCNNGC	3 cut(s)	282, 291, 295
CaiI	CAGNNNCTG	1 cut(s)	118
Cfr10I	RCCGGY	1 cut(s)	293
Csp6I	GTAC	2 cut(s)	40, 199
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	5 cut(s)	133, 144, 284, 289, 297
CviKI_1	RGCY	5 cut(s)	133, 144, 284, 289, 297
CviQI	GTAC	2 cut(s)	40, 199
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	2 cut(s)	5, 32
DpnII	GATC	2 cut(s)	3, 30
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	153
Eco31I	GGTCTC	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	1 cut(s)	88
FaiI	YATR	3 cut(s)	66, 86, 162
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FatI	CATG	1 cut(s)	84
FauI	CCCGC	1 cut(s)	298
FbaI	TGATCA	1 cut(s)	3
FokI	GGATG	2 cut(s)	81, 196
FspBI	CTAG	1 cut(s)	298
HapII	CCGG	1 cut(s)	294
Hin1II	CATG	1 cut(s)	88
HinfI	GANTC	1 cut(s)	115
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	3 cut(s)	136, 169, 196
Hpy188I	TCNGA	2 cut(s)	13, 253
Hpy188III	TCNNGA	3 cut(s)	98, 226, 274
HpyAV	CCTTC	2 cut(s)	67, 184
HpyCH4V	TGCA	4 cut(s)	112, 121, 139, 187
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 286, 290
HpyF3I	CTNAG	1 cut(s)	285
Hsp92II	CATG	1 cut(s)	88
KpnI	GGTACC	1 cut(s)	202
KroI	GCCGGC	1 cut(s)	293
KroNI	GCCGGC	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 30
LpnPI	CCDG	9 cut(s)	107, 111, 125, 166, 181, 193, 220, 257, 266
LweI	GCATC	3 cut(s)	103, 126, 174
MaeI	CTAG	1 cut(s)	298
MalI	GATC	2 cut(s)	5, 32
MboI	GATC	2 cut(s)	3, 30
MboII	GAAGA	3 cut(s)	28, 37, 82
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	1 cut(s)	264
MnlI	CCTC	6 cut(s)	46, 53, 159, 212, 222, 248
MroNI	GCCGGC	1 cut(s)	293
MseI	TTAA	1 cut(s)	129
MslI	CAYNNNNRTG	1 cut(s)	182
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	181
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	3 cut(s)	118, 286, 290
NaeI	GCCGGC	1 cut(s)	295
NdeII	GATC	2 cut(s)	3, 30
NgoMIV	GCCGGC	1 cut(s)	293
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	1 cut(s)	200
NspI	RCATGY	1 cut(s)	88
PaqCI	CACCTGC	1 cut(s)	112
PdiI	GCCGGC	1 cut(s)	295
PfeI	GAWTC	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	200
PstI	CTGCAG	1 cut(s)	123
PstNI	CAGNNNCTG	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	30
RsaI	GTAC	2 cut(s)	41, 200
RsaNI	GTAC	2 cut(s)	40, 199
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	129
Sau3AI	GATC	2 cut(s)	3, 30
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	8 cut(s)	45, 126, 135, 176, 182, 204, 240, 246
SfaNI	GCATC	3 cut(s)	103, 126, 174
SfcI	CTRYAG	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	2 cut(s)	226, 272
SmoI	CTYRAG	2 cut(s)	226, 272
SsiI	CCGC	2 cut(s)	25, 291
SspMI	CTAG	1 cut(s)	298
StyD4I	CCNGG	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	153
TaqI	TCGA	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	1 cut(s)	214
TspRI	CASTG	1 cut(s)	214
XceI	RCATGY	1 cut(s)	88
XspI	CTAG	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.