Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Forward (+)

15075863 .. 15085297

Gene Structure 9435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG147900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCCGAAGCATCCAGAGATCGACGTGCCGAATCTGCAGGTGATTAAGCTGATGCAGAGCTTCAAGTCCAAGGAGTATGTGAGGGAGACCTTCGCCTGGATGCACTATTACTGGTACCTCACCAATGATGGCATTGAGTTCTTGAGGAACTACCTCAACCTGCCCTCGGAGATTGTGCCCAACACTCTCAAGAAGCAGGCTAAGCCCGCCGGCCGTCCTTTCGGCGGCCCACCAGGCGACCGCCCTCGTTTCTGGTGCATTTGTTCAACACTGATCAACTGGAATTTGATTTGGTTTTTGTTGATGTGCATTAATGGCCCACCTCGCTTTGGTGATGGAGAGCGCAGATTTGGAGGTGACCGTGATGGTTACCGTGGAGGTCCTCGTGGTGGACCAGGAGGTGACTTTGGCGGGGACAAGGGAGGAGCCCCTGCTGACTACAGACCTTCTTTCGGGTTGTTACAAGTATGGTCTCAGATGTTCTTTTATACAAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

166

Amino Acids

19.0

Weight (kDa)

9.32

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S10_plectin	PF03501	1 - 66	2.4e-31	Plectin/S10 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	28
Acc36I	ACCTGC	2 cut(s)	28, 168
Acc65I	GGTACC	1 cut(s)	114
AccB1I	GGYRCC	1 cut(s)	114
AciI	CCGC	4 cut(s)	207, 225, 241, 411
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	1 cut(s)	283
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	6 cut(s)	96, 166, 224, 329, 389, 452
AgsI	TTSAA	2 cut(s)	64, 267
AjiI	CACGTC	1 cut(s)	25
AjnI	CCWGG	3 cut(s)	95, 232, 394
AluBI	AGCT	2 cut(s)	49, 60
AluI	AGCT	2 cut(s)	49, 60
Alw26I	GTCTC	2 cut(s)	80, 477
AoxI	GGCC	3 cut(s)	211, 226, 316
ApoI	RAATTY	1 cut(s)	283
AseI	ATTAAT	1 cut(s)	312
Asp718I	GGTACC	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	4 cut(s)	227, 317, 380, 392
AsuHPI	GGTGA	5 cut(s)	52, 112, 344, 368, 413
AvaII	GGWCC	2 cut(s)	380, 392
BaeGI	GKGCMC	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	430
BauI	CACGAG	1 cut(s)	384
BccI	CCATC	3 cut(s)	122, 329, 359
BceAI	ACGGC	1 cut(s)	198
BciT130I	CCWGG	3 cut(s)	97, 234, 396
BclI	TGATCA	1 cut(s)	273
BcoDI	GTCTC	2 cut(s)	80, 477
BfmI	CTRYAG	2 cut(s)	35, 439
BfuAI	ACCTGC	2 cut(s)	28, 168
BglI	GCCNNNNNGGC	1 cut(s)	234
BisI	GCNGC	1 cut(s)	226
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	227
Bme1390I	CCNGG	3 cut(s)	97, 234, 396
Bme18I	GGWCC	2 cut(s)	380, 392
BmgBI	CACGTC	1 cut(s)	25
BmgT120I	GGNCC	4 cut(s)	227, 317, 380, 392
BmiI	GGNNCC	2 cut(s)	116, 427
BmrFI	CCNGG	3 cut(s)	97, 234, 396
BmsI	GCATC	3 cut(s)	19, 42, 90
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	2 cut(s)	163, 173
BsaI	GGTCTC	2 cut(s)	80, 477
BsaJI	CCNNGG	3 cut(s)	69, 165, 373
Bsc4I	CCNNNNNNNGG	6 cut(s)	96, 166, 224, 329, 389, 452
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	2 cut(s)	116, 284
BseBI	CCWGG	3 cut(s)	97, 234, 396
BseDI	CCNNGG	3 cut(s)	69, 165, 373
BseGI	GGATG	2 cut(s)	10, 105
BseLI	CCNNNNNNNGG	6 cut(s)	96, 166, 224, 329, 389, 452
BseMII	CTCAG	1 cut(s)	488
BseNI	ACTGG	2 cut(s)	116, 284
BseRI	GAGGAG	1 cut(s)	438
BseSI	GKGCMC	1 cut(s)	180
BseX3I	CGGCCG	1 cut(s)	211
Bsh1285I	CGRYCG	2 cut(s)	214, 241
BshFI	GGCC	3 cut(s)	213, 228, 318
BshNI	GGYRCC	1 cut(s)	114
BsiEI	CGRYCG	2 cut(s)	214, 241
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	6 cut(s)	96, 166, 224, 329, 389, 452
BsmAI	GTCTC	2 cut(s)	80, 477
BsmFI	GGGAC	1 cut(s)	428
BsnI	GGCC	3 cut(s)	213, 228, 318
Bso31I	GGTCTC	2 cut(s)	80, 477
Bsp1286I	GDGCHC	2 cut(s)	180, 430
Bsp143I	GATC	2 cut(s)	18, 273
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	4 cut(s)	207, 225, 241, 411
BspANI	GGCC	3 cut(s)	213, 228, 318
BspCNI	CTCAG	1 cut(s)	487
BspLI	GGNNCC	2 cut(s)	116, 427
BspMAI	CTGCAG	1 cut(s)	39
BspMI	ACCTGC	2 cut(s)	28, 168
BspT107I	GGYRCC	1 cut(s)	114
BspTNI	GGTCTC	2 cut(s)	80, 477
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	2 cut(s)	116, 284
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	3 cut(s)	69, 165, 373
BssMI	GATC	2 cut(s)	18, 273
BssSI	CACGAG	1 cut(s)	384
BssT1I	CCWWGG	1 cut(s)	69
Bst2BI	CACGAG	1 cut(s)	384
Bst2UI	CCWGG	3 cut(s)	97, 234, 396
Bst4CI	ACNGT	2 cut(s)	362, 374
BstC8I	GCNNGC	3 cut(s)	198, 207, 211
BstDEI	CTNAG	2 cut(s)	201, 474
BstDSI	CCRYGG	1 cut(s)	373
BstEII	GGTNACC	2 cut(s)	356, 368
BstF5I	GGATG	2 cut(s)	10, 105
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	2 cut(s)	21, 276
BstMAI	GTCTC	2 cut(s)	80, 477
BstMBI	GATC	2 cut(s)	18, 273
BstMCI	CGRYCG	2 cut(s)	214, 241
BstMWI	GCNNNNNNNGC	6 cut(s)	34, 202, 206, 234, 315, 324
BstNI	CCWGG	3 cut(s)	97, 234, 396
BstPI	GGTNACC	2 cut(s)	356, 368
BstSCI	CCNGG	3 cut(s)	95, 232, 394
BstSFI	CTRYAG	2 cut(s)	35, 439
BstSLI	GKGCMC	1 cut(s)	180
BstZI	CGGCCG	1 cut(s)	211
BsuRI	GGCC	3 cut(s)	213, 228, 318
BtgI	CCRYGG	1 cut(s)	373
BtrI	CACGTC	1 cut(s)	25
BtsCI	GGATG	2 cut(s)	10, 105
BtsIMutI	CAGTG	1 cut(s)	269
BveI	ACCTGC	2 cut(s)	28, 168
Cac8I	GCNNGC	3 cut(s)	198, 207, 211
CfoI	GCGC	1 cut(s)	345
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	4 cut(s)	227, 317, 380, 392
Csp6I	GTAC	1 cut(s)	115
CviJI	RGCY	8 cut(s)	49, 60, 200, 205, 213, 228, 318, 428
CviKI_1	RGCY	8 cut(s)	49, 60, 200, 205, 213, 228, 318, 428
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	2 cut(s)	201, 474
DpnI	GATC	2 cut(s)	20, 275
DpnII	GATC	2 cut(s)	18, 273
EaeI	YGGCCR	1 cut(s)	211
EagI	CGGCCG	1 cut(s)	211
EclXI	CGGCCG	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	430
Eco31I	GGTCTC	2 cut(s)	80, 477
Eco47I	GGWCC	2 cut(s)	380, 392
Eco52I	CGGCCG	1 cut(s)	211
Eco91I	GGTNACC	2 cut(s)	356, 368
EcoO109I	RGGNCCY	1 cut(s)	380
EcoO65I	GGTNACC	2 cut(s)	356, 368
EcoRII	CCWGG	3 cut(s)	95, 232, 394
EcoT14I	CCWWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	69
FaiI	YATR	3 cut(s)	78, 469, 489
FaqI	GGGAC	1 cut(s)	428
FauI	CCCGC	2 cut(s)	214, 404
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	1 cut(s)	226
FokI	GGATG	1 cut(s)	112
FriOI	GRGCYC	1 cut(s)	430
Fsp4HI	GCNGC	1 cut(s)	226
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	1 cut(s)	226
HaeIII	GGCC	3 cut(s)	213, 228, 318
HapII	CCGG	1 cut(s)	210
HhaI	GCGC	1 cut(s)	345
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	5 cut(s)	52, 112, 344, 368, 413
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	2 cut(s)	169, 477
Hpy188III	TCNNGA	3 cut(s)	14, 142, 190
Hpy8I	GTNNAC	1 cut(s)	392
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	100, 456
HpyCH4III	ACNGT	2 cut(s)	362, 374
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	5 cut(s)	37, 55, 103, 258, 309
HpyF10VI	GCNNNNNNNGC	6 cut(s)	34, 202, 206, 234, 315, 324
HpyF3I	CTNAG	2 cut(s)	201, 474
HpySE526I	ACGT	1 cut(s)	24
HspAI	GCGC	1 cut(s)	343
KpnI	GGTACC	1 cut(s)	118
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Ksp22I	TGATCA	1 cut(s)	273
Kzo9I	GATC	2 cut(s)	18, 273
LmnI	GCTCC	1 cut(s)	425
LweI	GCATC	3 cut(s)	19, 42, 90
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	4 cut(s)	356, 368, 401, 459
MalI	GATC	2 cut(s)	20, 275
MboI	GATC	2 cut(s)	18, 273
MhlI	GDGCHC	2 cut(s)	180, 430
MluCI	AATT	1 cut(s)	283
MroNI	GCCGGC	1 cut(s)	209
MseI	TTAA	2 cut(s)	45, 312
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	3 cut(s)	97, 234, 396
MvaI	CCWGG	3 cut(s)	97, 234, 396
MwoI	GCNNNNNNNGC	6 cut(s)	34, 202, 206, 234, 315, 324
NaeI	GCCGGC	1 cut(s)	211
NdeII	GATC	2 cut(s)	18, 273
NgoMIV	GCCGGC	1 cut(s)	209
NlaIV	GGNNCC	2 cut(s)	116, 427
NmuCI	GTSAC	2 cut(s)	356, 401
PaqCI	CACCTGC	1 cut(s)	28
PdiI	GCCGGC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	227
PpuMI	RGGWCCY	1 cut(s)	380
PshBI	ATTAAT	1 cut(s)	312
Psp5II	RGGWCCY	1 cut(s)	380
Psp6I	CCWGG	3 cut(s)	95, 232, 394
PspEI	GGTNACC	2 cut(s)	356, 368
PspGI	CCWGG	3 cut(s)	95, 232, 394
PspN4I	GGNNCC	2 cut(s)	116, 427
PspPI	GGNCC	4 cut(s)	227, 317, 380, 392
PspPPI	RGGWCCY	1 cut(s)	380
PstI	CTGCAG	1 cut(s)	39
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SaqAI	TTAA	2 cut(s)	45, 312
SatI	GCNGC	1 cut(s)	226
Sau3AI	GATC	2 cut(s)	18, 273
Sau96I	GGNCC	4 cut(s)	227, 317, 380, 392
ScrFI	CCNGG	3 cut(s)	97, 234, 396
SduI	GDGCHC	2 cut(s)	180, 430
SfaNI	GCATC	3 cut(s)	19, 42, 90
SfcI	CTRYAG	2 cut(s)	35, 439
SinI	GGWCC	2 cut(s)	380, 392
SmlI	CTYRAG	2 cut(s)	142, 188
SmoI	CTYRAG	2 cut(s)	142, 188
Sse9I	AATT	1 cut(s)	283
SsiI	CCGC	4 cut(s)	207, 225, 241, 411
StyD4I	CCNGG	3 cut(s)	95, 232, 394
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	362, 374
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	1 cut(s)	21
TasI	AATT	1 cut(s)	283
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	2 cut(s)	45, 312
Tru9I	TTAA	2 cut(s)	45, 312
TscAI	CASTG	1 cut(s)	276
TseFI	GTSAC	2 cut(s)	356, 401
Tsp45I	GTSAC	2 cut(s)	356, 401
TspRI	CASTG	1 cut(s)	276
VpaK11BI	GGWCC	2 cut(s)	380, 392
VspI	ATTAAT	1 cut(s)	312
XapI	RAATTY	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.