Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Reverse (-)

59559938 .. 59566770

Gene Structure 6833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG396400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCCGAAGCATCCAGAGATCGACGTGCCGAATCTGCAGGTGATTAAGCTGATGCAGAGCTTCAAGTCCAAGGAGTATGTGAGGGAGACCTTCGCCTGGATGCACTATTACTGGTACCTCACCAATGATGGCATTGAGTTCTTGAGGAACTACCTCAACCTGCCCTCGGAGATTGTGCCCAACACTCTCAAGAAGCAGGCTAAGCCCGCCGGCCGTCCTTTCGGCGGCCTACCAGGCGACCGCCCTCGTTTCTGGTGCATTTGTTCAACACTGATCGACTGGAATTTGATTTGGTTTTTGTTGATGTGCATTAATGGCCCACCTCGCTTTGGTGATGGAGAGCGCAGATTTGGAGGTGACCGTGATGGTTACCGTGGAGGTCCTCGTGGTGGACCAGGAGGTGACTTTGGCGGGGACAAGGGAGGAGCCCCTGCTGACTACAGACCTTCTTTCGGGGTTCTATTTTTGTTTGCCAATCATGGATCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

163

Amino Acids

18.47

Weight (kDa)

9.03

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S10_plectin	PF03501	1 - 66	2.3e-31	Plectin/S10 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	28
Acc36I	ACCTGC	2 cut(s)	28, 168
Acc65I	GGTACC	1 cut(s)	114
AccB1I	GGYRCC	1 cut(s)	114
AciI	CCGC	4 cut(s)	207, 225, 241, 411
AclWI	GGATC	1 cut(s)	490
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	1 cut(s)	283
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	6 cut(s)	96, 166, 224, 329, 389, 452
AgsI	TTSAA	2 cut(s)	64, 267
AjiI	CACGTC	1 cut(s)	25
AjnI	CCWGG	3 cut(s)	95, 232, 394
AluBI	AGCT	2 cut(s)	49, 60
AluI	AGCT	2 cut(s)	49, 60
Alw26I	GTCTC	1 cut(s)	80
AlwI	GGATC	1 cut(s)	490
AoxI	GGCC	3 cut(s)	211, 226, 316
ApoI	RAATTY	1 cut(s)	283
AseI	ATTAAT	1 cut(s)	312
Asp718I	GGTACC	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	3 cut(s)	317, 380, 392
AsuHPI	GGTGA	5 cut(s)	52, 112, 344, 368, 413
AvaII	GGWCC	2 cut(s)	380, 392
BaeGI	GKGCMC	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	430
BauI	CACGAG	1 cut(s)	384
BccI	CCATC	3 cut(s)	122, 329, 359
BceAI	ACGGC	1 cut(s)	198
BciT130I	CCWGG	3 cut(s)	97, 234, 396
BcoDI	GTCTC	1 cut(s)	80
BfmI	CTRYAG	2 cut(s)	35, 439
BfuAI	ACCTGC	2 cut(s)	28, 168
BglI	GCCNNNNNGGC	1 cut(s)	234
BisI	GCNGC	1 cut(s)	226
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	227
Bme1390I	CCNGG	3 cut(s)	97, 234, 396
Bme18I	GGWCC	2 cut(s)	380, 392
BmgBI	CACGTC	1 cut(s)	25
BmgT120I	GGNCC	3 cut(s)	317, 380, 392
BmiI	GGNNCC	2 cut(s)	116, 427
BmrFI	CCNGG	3 cut(s)	97, 234, 396
BmsI	GCATC	3 cut(s)	19, 42, 90
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	2 cut(s)	163, 173
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	3 cut(s)	69, 165, 373
Bsc4I	CCNNNNNNNGG	6 cut(s)	96, 166, 224, 329, 389, 452
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	2 cut(s)	116, 284
BseBI	CCWGG	3 cut(s)	97, 234, 396
BseDI	CCNNGG	3 cut(s)	69, 165, 373
BseGI	GGATG	2 cut(s)	10, 105
BseLI	CCNNNNNNNGG	6 cut(s)	96, 166, 224, 329, 389, 452
BseNI	ACTGG	2 cut(s)	116, 284
BseRI	GAGGAG	1 cut(s)	438
BseSI	GKGCMC	1 cut(s)	180
BseX3I	CGGCCG	1 cut(s)	211
Bsh1285I	CGRYCG	2 cut(s)	214, 241
BshFI	GGCC	3 cut(s)	213, 228, 318
BshNI	GGYRCC	1 cut(s)	114
BsiEI	CGRYCG	2 cut(s)	214, 241
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	6 cut(s)	96, 166, 224, 329, 389, 452
BsmAI	GTCTC	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	428
BsnI	GGCC	3 cut(s)	213, 228, 318
Bso31I	GGTCTC	1 cut(s)	80
Bsp1286I	GDGCHC	2 cut(s)	180, 430
Bsp143I	GATC	3 cut(s)	18, 273, 482
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	4 cut(s)	207, 225, 241, 411
BspANI	GGCC	3 cut(s)	213, 228, 318
BspLI	GGNNCC	2 cut(s)	116, 427
BspMAI	CTGCAG	1 cut(s)	39
BspMI	ACCTGC	2 cut(s)	28, 168
BspPI	GGATC	1 cut(s)	490
BspT107I	GGYRCC	1 cut(s)	114
BspTNI	GGTCTC	1 cut(s)	80
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	2 cut(s)	116, 284
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	3 cut(s)	69, 165, 373
BssMI	GATC	3 cut(s)	18, 273, 482
BssSI	CACGAG	1 cut(s)	384
BssT1I	CCWWGG	1 cut(s)	69
Bst2BI	CACGAG	1 cut(s)	384
Bst2UI	CCWGG	3 cut(s)	97, 234, 396
Bst4CI	ACNGT	2 cut(s)	362, 374
BstC8I	GCNNGC	3 cut(s)	198, 207, 211
BstDEI	CTNAG	1 cut(s)	201
BstDSI	CCRYGG	1 cut(s)	373
BstEII	GGTNACC	2 cut(s)	356, 368
BstF5I	GGATG	2 cut(s)	10, 105
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	3 cut(s)	21, 276, 485
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	3 cut(s)	18, 273, 482
BstMCI	CGRYCG	2 cut(s)	214, 241
BstMWI	GCNNNNNNNGC	6 cut(s)	34, 202, 206, 234, 315, 324
BstNI	CCWGG	3 cut(s)	97, 234, 396
BstPI	GGTNACC	2 cut(s)	356, 368
BstSCI	CCNGG	3 cut(s)	95, 232, 394
BstSFI	CTRYAG	2 cut(s)	35, 439
BstSLI	GKGCMC	1 cut(s)	180
BstZI	CGGCCG	1 cut(s)	211
BsuRI	GGCC	3 cut(s)	213, 228, 318
BtgI	CCRYGG	1 cut(s)	373
BtrI	CACGTC	1 cut(s)	25
BtsCI	GGATG	2 cut(s)	10, 105
BtsIMutI	CAGTG	1 cut(s)	269
BveI	ACCTGC	2 cut(s)	28, 168
Cac8I	GCNNGC	3 cut(s)	198, 207, 211
CfoI	GCGC	1 cut(s)	345
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	3 cut(s)	317, 380, 392
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	1 cut(s)	479
CviJI	RGCY	8 cut(s)	49, 60, 200, 205, 213, 228, 318, 428
CviKI_1	RGCY	8 cut(s)	49, 60, 200, 205, 213, 228, 318, 428
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	3 cut(s)	20, 275, 484
DpnII	GATC	3 cut(s)	18, 273, 482
EaeI	YGGCCR	1 cut(s)	211
EagI	CGGCCG	1 cut(s)	211
EclXI	CGGCCG	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	430
Eco31I	GGTCTC	1 cut(s)	80
Eco47I	GGWCC	2 cut(s)	380, 392
Eco52I	CGGCCG	1 cut(s)	211
Eco91I	GGTNACC	2 cut(s)	356, 368
EcoO109I	RGGNCCY	1 cut(s)	380
EcoO65I	GGTNACC	2 cut(s)	356, 368
EcoRII	CCWGG	3 cut(s)	95, 232, 394
EcoT14I	CCWWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	1 cut(s)	482
FaiI	YATR	2 cut(s)	78, 480
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	1 cut(s)	478
FauI	CCCGC	2 cut(s)	214, 404
Fnu4HI	GCNGC	1 cut(s)	226
FokI	GGATG	1 cut(s)	112
FriOI	GRGCYC	1 cut(s)	430
Fsp4HI	GCNGC	1 cut(s)	226
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	1 cut(s)	226
HaeIII	GGCC	3 cut(s)	213, 228, 318
HapII	CCGG	1 cut(s)	210
HhaI	GCGC	1 cut(s)	345
Hin1II	CATG	1 cut(s)	482
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	5 cut(s)	52, 112, 344, 368, 413
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	3 cut(s)	14, 142, 190
Hpy8I	GTNNAC	1 cut(s)	392
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	100, 456
HpyCH4III	ACNGT	2 cut(s)	362, 374
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	5 cut(s)	37, 55, 103, 258, 309
HpyF10VI	GCNNNNNNNGC	6 cut(s)	34, 202, 206, 234, 315, 324
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	482
HspAI	GCGC	1 cut(s)	343
KpnI	GGTACC	1 cut(s)	118
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	18, 273, 482
LmnI	GCTCC	1 cut(s)	425
LweI	GCATC	3 cut(s)	19, 42, 90
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	3 cut(s)	356, 368, 401
MalI	GATC	3 cut(s)	20, 275, 484
MboI	GATC	3 cut(s)	18, 273, 482
MhlI	GDGCHC	2 cut(s)	180, 430
MluCI	AATT	1 cut(s)	283
MroNI	GCCGGC	1 cut(s)	209
MseI	TTAA	2 cut(s)	45, 312
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	3 cut(s)	97, 234, 396
MvaI	CCWGG	3 cut(s)	97, 234, 396
MwoI	GCNNNNNNNGC	6 cut(s)	34, 202, 206, 234, 315, 324
NaeI	GCCGGC	1 cut(s)	211
NdeII	GATC	3 cut(s)	18, 273, 482
NgoMIV	GCCGGC	1 cut(s)	209
NlaIII	CATG	1 cut(s)	482
NlaIV	GGNNCC	2 cut(s)	116, 427
NmuCI	GTSAC	2 cut(s)	356, 401
PaqCI	CACCTGC	1 cut(s)	28
PdiI	GCCGGC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	227
PpuMI	RGGWCCY	1 cut(s)	380
PshBI	ATTAAT	1 cut(s)	312
Psp5II	RGGWCCY	1 cut(s)	380
Psp6I	CCWGG	3 cut(s)	95, 232, 394
PspEI	GGTNACC	2 cut(s)	356, 368
PspGI	CCWGG	3 cut(s)	95, 232, 394
PspN4I	GGNNCC	2 cut(s)	116, 427
PspPI	GGNCC	3 cut(s)	317, 380, 392
PspPPI	RGGWCCY	1 cut(s)	380
PstI	CTGCAG	1 cut(s)	39
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SaqAI	TTAA	2 cut(s)	45, 312
SatI	GCNGC	1 cut(s)	226
Sau3AI	GATC	3 cut(s)	18, 273, 482
Sau96I	GGNCC	3 cut(s)	317, 380, 392
ScrFI	CCNGG	3 cut(s)	97, 234, 396
SduI	GDGCHC	2 cut(s)	180, 430
SfaNI	GCATC	3 cut(s)	19, 42, 90
SfcI	CTRYAG	2 cut(s)	35, 439
SinI	GGWCC	2 cut(s)	380, 392
SmlI	CTYRAG	2 cut(s)	142, 188
SmoI	CTYRAG	2 cut(s)	142, 188
Sse9I	AATT	1 cut(s)	283
SsiI	CCGC	4 cut(s)	207, 225, 241, 411
StyD4I	CCNGG	3 cut(s)	95, 232, 394
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	362, 374
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	2 cut(s)	21, 276
TasI	AATT	1 cut(s)	283
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	2 cut(s)	45, 312
Tru9I	TTAA	2 cut(s)	45, 312
TscAI	CASTG	1 cut(s)	276
TseFI	GTSAC	2 cut(s)	356, 401
Tsp45I	GTSAC	2 cut(s)	356, 401
TspRI	CASTG	1 cut(s)	276
VpaK11BI	GGWCC	2 cut(s)	380, 392
VspI	ATTAAT	1 cut(s)	312
XapI	RAATTY	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.