Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Reverse (-)

13777415 .. 13779338

Gene Structure 1924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g08550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGATAGATACCAAGGCCCATATCTTGCTACCAAAAAACCCACTACGTGTCGCACACATCAGAGTTTTAGGGTTTACTCCACACAGCAGAGCAGACAATAAGAGTACCAGAGCACCCAGACCTTCGCCGCCGTGTCCCCCTTCTGCCGTCGTTTGCTCATCCCCATCCATGATCATTTCAGAGAAGAACCGTCGTGAGATCTCCAAGTACCTCTTTCAAGAGGGAGTTTGTTATGCAAAAAAGGACTATAACTTGGCGAAGCACCCGGATATCGATGTGCCGAACCTGCAGGTGATTAAGCTGATGCAGAGCCTTAAGTCGAAGGAGTATGTGAGAGAAACTTTTGCTTGGATGCATTACTACTGGTACCTTACCAATGACGGTATTGAGTTTTTGAGGACCTACCTCAATCTCCCTTCTGAGATTGTCCCTGCAACTTTGAAGAAGCAGGCCAAACCTGCTGGCCGCCCAATGGGGCTGTCTGGTGACCGCCCACGTGGCCCATCTCGCTTTGATGGAGAGCGTAGATTCGGTGGTGACAGGGATGGGTACCGTGGAGGACCCCGTGCACCTGGTGGTGACTTTGGTGATAAGGGTGGAGCTCCTGCTGATTTCAAGCCTTCTTTTGGGGGCCCTGGTGGAAGGCCTGGCTTCGGTCGTGGAGCTGGTGGTTTCGGTGCAGGCCCGGCTAGCAGCTCTAACCTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0001763 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009653 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010252 GO:0010346 GO:0015935 GO:0016043 GO:0022603 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030312 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042592 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048367 GO:0048507 GO:0048532 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0051239 GO:0060688 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0090506 GO:0097159 GO:1900618 GO:1901363 GO:1905393 GO:1905428 GO:1990904 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

S10_plectin

Protein Analysis

237

Amino Acids

25.75

Weight (kDa)

9.91

Isoelectric Point (pI)

56.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S10_plectin	PF03501	59 - 150	1.4e-42	Plectin/S10 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	280
Acc36I	ACCTGC	3 cut(s)	280, 294, 466
Acc65I	GGTACC	2 cut(s)	366, 549
AccB1I	GGYRCC	2 cut(s)	366, 549
AciI	CCGC	3 cut(s)	128, 466, 490
AcoI	YGGCCR	1 cut(s)	463
AcvI	CACGTG	1 cut(s)	497
AdeI	CACNNNGTG	2 cut(s)	47, 575
AfaI	GTAC	4 cut(s)	106, 209, 368, 551
AfiI	CCNNNNNNNGG	3 cut(s)	472, 626, 653
AflII	CTTAAG	1 cut(s)	314
AflIII	ACRYGT	1 cut(s)	46
AgsI	TTSAA	3 cut(s)	218, 442, 616
AjnI	CCWGG	3 cut(s)	571, 634, 646
AluBI	AGCT	4 cut(s)	301, 602, 665, 696
AluI	AGCT	4 cut(s)	301, 602, 665, 696
Alw21I	GWGCWC	3 cut(s)	115, 571, 604
Alw44I	GTGCAC	1 cut(s)	567
AoxI	GGCC	7 cut(s)	15, 450, 463, 499, 631, 644, 682
ApaI	GGGCCC	1 cut(s)	635
ApaLI	GTGCAC	1 cut(s)	567
ApeKI	GCWGC	1 cut(s)	693
Asp718I	GGTACC	2 cut(s)	366, 549
AspS9I	GGNCC	7 cut(s)	16, 399, 500, 560, 631, 632, 683
AsuC2I	CCSGG	2 cut(s)	266, 686
AsuHPI	GGTGA	5 cut(s)	304, 497, 548, 590, 599
AsuNHI	GCTAGC	1 cut(s)	689
AvaII	GGWCC	2 cut(s)	399, 560
BaeGI	GKGCMC	2 cut(s)	571, 635
BanI	GGYRCC	2 cut(s)	366, 549
BanII	GRGCYC	2 cut(s)	604, 635
BbrPI	CACGTG	1 cut(s)	497
Bbv12I	GWGCWC	3 cut(s)	115, 571, 604
BbvI	GCAGC	1 cut(s)	705
BccI	CCATC	4 cut(s)	172, 509, 511, 539
BceAI	ACGGC	2 cut(s)	115, 131
BciT130I	CCWGG	3 cut(s)	573, 636, 648
BclI	TGATCA	1 cut(s)	171
BcnI	CCSGG	2 cut(s)	266, 686
BfaI	CTAG	1 cut(s)	690
BfmI	CTRYAG	1 cut(s)	287
BfrI	CTTAAG	1 cut(s)	314
BfuAI	ACCTGC	3 cut(s)	280, 294, 466
BglI	GCCNNNNNGGC	1 cut(s)	498
BglII	AGATCT	1 cut(s)	198
BisI	GCNGC	3 cut(s)	128, 466, 694
BlsI	GCNGC	3 cut(s)	129, 467, 695
Bme1390I	CCNGG	5 cut(s)	266, 573, 636, 648, 686
Bme18I	GGWCC	2 cut(s)	399, 560
BmgT120I	GGNCC	7 cut(s)	16, 399, 500, 560, 631, 632, 683
BmiI	GGNNCC	5 cut(s)	368, 551, 562, 632, 633
BmrFI	CCNGG	5 cut(s)	266, 573, 636, 648, 686
BmsI	GCATC	2 cut(s)	294, 342
BmtI	GCTAGC	1 cut(s)	693
BpuMI	CCSGG	2 cut(s)	266, 686
Bsa29I	ATCGAT	1 cut(s)	273
BsaAI	YACGTR	2 cut(s)	47, 497
BsaJI	CCNNGG	3 cut(s)	12, 553, 634
Bsc4I	CCNNNNNNNGG	3 cut(s)	472, 626, 653
Bse1I	ACTGG	1 cut(s)	368
BseBI	CCWGG	3 cut(s)	573, 636, 648
BseCI	ATCGAT	1 cut(s)	273
BseDI	CCNNGG	3 cut(s)	12, 553, 634
BseGI	GGATG	4 cut(s)	158, 164, 357, 550
BseLI	CCNNNNNNNGG	3 cut(s)	472, 626, 653
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	1 cut(s)	368
BseSI	GKGCMC	2 cut(s)	571, 635
BseXI	GCAGC	1 cut(s)	705
BsgI	GTGCAG	1 cut(s)	699
Bsh1285I	CGRYCG	1 cut(s)	658
BshFI	GGCC	7 cut(s)	17, 452, 465, 501, 633, 646, 684
BshNI	GGYRCC	2 cut(s)	366, 549
BshVI	ATCGAT	1 cut(s)	273
BsiEI	CGRYCG	1 cut(s)	658
BsiHKAI	GWGCWC	3 cut(s)	115, 571, 604
BsiSI	CCGG	2 cut(s)	266, 686
BslFI	GGGAC	2 cut(s)	120, 413
BslI	CCNNNNNNNGG	3 cut(s)	472, 626, 653
BsmFI	GGGAC	2 cut(s)	120, 413
BsnI	GGCC	7 cut(s)	17, 452, 465, 501, 633, 646, 684
Bsp120I	GGGCCC	1 cut(s)	631
Bsp1286I	GDGCHC	4 cut(s)	115, 571, 604, 635
Bsp143I	GATC	2 cut(s)	171, 198
BspACI	CCGC	3 cut(s)	128, 466, 490
BspANI	GGCC	7 cut(s)	17, 452, 465, 501, 633, 646, 684
BspCNI	CTCAG	1 cut(s)	412
BspDI	ATCGAT	1 cut(s)	273
BspLI	GGNNCC	5 cut(s)	368, 551, 562, 632, 633
BspMAI	CTGCAG	1 cut(s)	291
BspMI	ACCTGC	3 cut(s)	280, 294, 466
BspOI	GCTAGC	1 cut(s)	693
BspT107I	GGYRCC	2 cut(s)	366, 549
BspTI	CTTAAG	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	368
BssECI	CCNNGG	3 cut(s)	12, 553, 634
BssMI	GATC	2 cut(s)	171, 198
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	3 cut(s)	573, 636, 648
Bst4CI	ACNGT	3 cut(s)	191, 383, 554
BstAFI	CTTAAG	1 cut(s)	314
BstBAI	YACGTR	2 cut(s)	47, 497
BstC8I	GCNNGC	4 cut(s)	450, 463, 682, 691
BstDEI	CTNAG	1 cut(s)	420
BstDSI	CCRYGG	1 cut(s)	553
BstEII	GGTNACC	1 cut(s)	485
BstF5I	GGATG	4 cut(s)	158, 164, 357, 550
BstKTI	GATC	2 cut(s)	174, 201
BstMBI	GATC	2 cut(s)	171, 198
BstMCI	CGRYCG	1 cut(s)	658
BstMWI	GCNNNNNNNGC	6 cut(s)	286, 458, 498, 507, 686, 690
BstNI	CCWGG	3 cut(s)	573, 636, 648
BstPI	GGTNACC	1 cut(s)	485
BstSCI	CCNGG	5 cut(s)	264, 571, 634, 646, 684
BstSFI	CTRYAG	1 cut(s)	287
BstSLI	GKGCMC	2 cut(s)	571, 635
BstV1I	GCAGC	1 cut(s)	705
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
Bsu15I	ATCGAT	1 cut(s)	273
BsuRI	GGCC	7 cut(s)	17, 452, 465, 501, 633, 646, 684
BsuTUI	ATCGAT	1 cut(s)	273
BtgI	CCRYGG	1 cut(s)	553
BtsCI	GGATG	4 cut(s)	158, 164, 357, 550
BveI	ACCTGC	3 cut(s)	280, 294, 466
Cac8I	GCNNGC	4 cut(s)	450, 463, 682, 691
Cfr13I	GGNCC	7 cut(s)	16, 399, 500, 560, 631, 632, 683
ClaI	ATCGAT	1 cut(s)	273
CsiI	ACCWGGT	1 cut(s)	571
Csp6I	GTAC	4 cut(s)	105, 208, 367, 550
CviAII	CATG	1 cut(s)	169
CviQI	GTAC	4 cut(s)	105, 208, 367, 550
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	2 cut(s)	173, 200
DpnII	GATC	2 cut(s)	171, 198
DraIII	CACNNNGTG	2 cut(s)	47, 575
EaeI	YGGCCR	1 cut(s)	463
Ecl136II	GAGCTC	1 cut(s)	602
Eco130I	CCWWGG	1 cut(s)	12
Eco147I	AGGCCT	1 cut(s)	646
Eco24I	GRGCYC	2 cut(s)	604, 635
Eco32I	GATATC	1 cut(s)	271
Eco47I	GGWCC	2 cut(s)	399, 560
Eco53kI	GAGCTC	1 cut(s)	602
Eco72I	CACGTG	1 cut(s)	497
Eco91I	GGTNACC	1 cut(s)	485
EcoICRI	GAGCTC	1 cut(s)	602
EcoO109I	RGGNCCY	4 cut(s)	399, 560, 631, 632
EcoO65I	GGTNACC	1 cut(s)	485
EcoRII	CCWGG	3 cut(s)	571, 634, 646
EcoRV	GATATC	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	12
EcoT22I	ATGCAT	1 cut(s)	357
EcoT38I	GRGCYC	2 cut(s)	604, 635
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	1 cut(s)	172
FaiI	YATR	5 cut(s)	21, 170, 234, 249, 330
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FaqI	GGGAC	2 cut(s)	120, 413
FatI	CATG	1 cut(s)	168
FbaI	TGATCA	1 cut(s)	171
Fnu4HI	GCNGC	3 cut(s)	128, 466, 694
FokI	GGATG	4 cut(s)	145, 151, 364, 557
FriOI	GRGCYC	2 cut(s)	604, 635
Fsp4HI	GCNGC	3 cut(s)	128, 466, 694
FspBI	CTAG	1 cut(s)	690
GluI	GCNGC	3 cut(s)	128, 466, 694
HaeIII	GGCC	7 cut(s)	17, 452, 465, 501, 633, 646, 684
HapII	CCGG	2 cut(s)	266, 686
Hin1II	CATG	1 cut(s)	172
HinfI	GANTC	1 cut(s)	528
HpaII	CCGG	2 cut(s)	266, 686
HphI	GGTGA	5 cut(s)	304, 497, 548, 590, 599
Hpy166II	GTNNAC	2 cut(s)	75, 569
Hpy188I	TCNGA	3 cut(s)	62, 181, 421
Hpy188III	TCNNGA	3 cut(s)	194, 218, 708
Hpy8I	GTNNAC	2 cut(s)	75, 569
Hpy99I	CGWCG	2 cut(s)	152, 195
HpyAV	CCTTC	6 cut(s)	132, 150, 316, 426, 630, 636
HpyCH4III	ACNGT	3 cut(s)	191, 383, 554
HpyCH4IV	ACGT	2 cut(s)	46, 496
HpyCH4V	TGCA	7 cut(s)	236, 289, 307, 355, 434, 569, 680
HpyF10VI	GCNNNNNNNGC	6 cut(s)	286, 458, 498, 507, 686, 690
HpyF3I	CTNAG	1 cut(s)	420
HpySE526I	ACGT	2 cut(s)	46, 496
Hsp92II	CATG	1 cut(s)	172
KpnI	GGTACC	2 cut(s)	370, 553
Ksp22I	TGATCA	1 cut(s)	171
Kzo9I	GATC	2 cut(s)	171, 198
LmnI	GCTCC	3 cut(s)	599, 607, 662
Lsp1109I	GCAGC	1 cut(s)	705
LweI	GCATC	2 cut(s)	294, 342
MabI	ACCWGGT	1 cut(s)	571
MaeI	CTAG	1 cut(s)	690
MaeII	ACGT	2 cut(s)	46, 496
MaeIII	GTNAC	3 cut(s)	485, 536, 578
MalI	GATC	2 cut(s)	173, 200
MboI	GATC	2 cut(s)	171, 198
MboII	GAAGA	2 cut(s)	196, 454
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	4 cut(s)	115, 571, 604, 635
MnlI	CCTC	5 cut(s)	214, 221, 390, 416, 551
Mph1103I	ATGCAT	1 cut(s)	357
MseI	TTAA	2 cut(s)	297, 315
MspCI	CTTAAG	1 cut(s)	314
MspI	CCGG	2 cut(s)	266, 686
MspR9I	CCNGG	5 cut(s)	266, 573, 636, 648, 686
MvaI	CCWGG	3 cut(s)	573, 636, 648
MwoI	GCNNNNNNNGC	6 cut(s)	286, 458, 498, 507, 686, 690
NciI	CCSGG	2 cut(s)	266, 686
NdeII	GATC	2 cut(s)	171, 198
NheI	GCTAGC	1 cut(s)	689
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	5 cut(s)	368, 551, 562, 632, 633
NmuCI	GTSAC	3 cut(s)	485, 536, 578
NsiI	ATGCAT	1 cut(s)	357
PaqCI	CACCTGC	1 cut(s)	280
PceI	AGGCCT	1 cut(s)	646
PfeI	GAWTC	1 cut(s)	528
PkrI	GCNGC	3 cut(s)	129, 467, 695
PmaCI	CACGTG	1 cut(s)	497
PmlI	CACGTG	1 cut(s)	497
Ppu21I	YACGTR	2 cut(s)	47, 497
PpuMI	RGGWCCY	2 cut(s)	399, 560
Psp124BI	GAGCTC	1 cut(s)	604
Psp5II	RGGWCCY	2 cut(s)	399, 560
Psp6I	CCWGG	3 cut(s)	571, 634, 646
PspCI	CACGTG	1 cut(s)	497
PspEI	GGTNACC	1 cut(s)	485
PspGI	CCWGG	3 cut(s)	571, 634, 646
PspN4I	GGNNCC	5 cut(s)	368, 551, 562, 632, 633
PspOMI	GGGCCC	1 cut(s)	631
PspPI	GGNCC	7 cut(s)	16, 399, 500, 560, 631, 632, 683
PspPPI	RGGWCCY	2 cut(s)	399, 560
PstI	CTGCAG	1 cut(s)	291
PsuI	RGATCY	1 cut(s)	198
RsaI	GTAC	4 cut(s)	106, 209, 368, 551
RsaNI	GTAC	4 cut(s)	105, 208, 367, 550
SacI	GAGCTC	1 cut(s)	604
SaqAI	TTAA	2 cut(s)	297, 315
SatI	GCNGC	3 cut(s)	128, 466, 694
Sau3AI	GATC	2 cut(s)	171, 198
Sau96I	GGNCC	7 cut(s)	16, 399, 500, 560, 631, 632, 683
SbfI	CCTGCAGG	1 cut(s)	291
ScrFI	CCNGG	5 cut(s)	266, 573, 636, 648, 686
SdaI	CCTGCAGG	1 cut(s)	291
SduI	GDGCHC	4 cut(s)	115, 571, 604, 635
SexAI	ACCWGGT	1 cut(s)	571
SfaNI	GCATC	2 cut(s)	294, 342
SfcI	CTRYAG	1 cut(s)	287
SinI	GGWCC	2 cut(s)	399, 560
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse8387I	CCTGCAGG	1 cut(s)	291
SseBI	AGGCCT	1 cut(s)	646
SsiI	CCGC	3 cut(s)	128, 466, 490
SspMI	CTAG	1 cut(s)	690
SstI	GAGCTC	1 cut(s)	604
StuI	AGGCCT	1 cut(s)	646
StyD4I	CCNGG	5 cut(s)	264, 571, 634, 646, 684
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	3 cut(s)	191, 383, 554
TaiI	ACGT	2 cut(s)	49, 499
TaqI	TCGA	2 cut(s)	273, 320
TaqII	GACCGA	1 cut(s)	644
TauI	GCSGC	2 cut(s)	130, 468
TfiI	GAWTC	1 cut(s)	528
Tru1I	TTAA	2 cut(s)	297, 315
Tru9I	TTAA	2 cut(s)	297, 315
TseFI	GTSAC	3 cut(s)	485, 536, 578
TseI	GCWGC	1 cut(s)	693
Tsp45I	GTSAC	3 cut(s)	485, 536, 578
Vha464I	CTTAAG	1 cut(s)	314
VneI	GTGCAC	1 cut(s)	567
VpaK11BI	GGWCC	2 cut(s)	399, 560
XspI	CTAG	1 cut(s)	690
Zsp2I	ATGCAT	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.