Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Forward (+)

81817914 .. 81824855

Gene Structure 6942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG516800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGTCCGACTGGGCAGAGGAGAATGGAGGCCCCTACAAGGCATCAATTCCATTGATTCATGCCACAAGCCCAGAAGCAGATGTTTTACTTGCTTATGAGATGAATGGAGAGGCAAACAGAAAAGCAAAACATGTAGAGTCCCATTGGGTTTTCCTCCAAACCCAGATTCAAAATCCCACTTTTGCATCTAAGCCAAGCCAAATTGGAGAAAACGAAGCTCCAATTCCAAATGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006725 GO:0006778 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008482 GO:0009987 GO:0010035 GO:0010477 GO:0015994 GO:0016491 GO:0016667 GO:0016670 GO:0033013 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051186 GO:0055114 GO:0071704 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 map00920 map01100 map01120

Pfam Domains

Protein Families

Mo-co_dimer Oxidored_molyb

Protein Analysis

78

Amino Acids

8.57

Weight (kDa)

4.93

Isoelectric Point (pI)

32.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	37
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	170
AjuI	GAANNNNNNNTTGG	2 cut(s)	150, 182
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
AoxI	GGCC	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	29
BmiI	GGNNCC	1 cut(s)	31
BmrI	ACTGGG	1 cut(s)	19
BmsI	GCATC	2 cut(s)	50, 194
BmuI	ACTGGG	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	14
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseNI	ACTGG	1 cut(s)	14
BseRI	GAGGAG	1 cut(s)	32
BshFI	GGCC	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	30
BspANI	GGCC	1 cut(s)	30
BspLI	GGNNCC	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	14
BstDEI	CTNAG	1 cut(s)	189
BstNSI	RCATGY	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	29
CviAII	CATG	2 cut(s)	59, 131
CviJI	RGCY	5 cut(s)	30, 69, 193, 198, 218
CviKI_1	RGCY	5 cut(s)	30, 69, 193, 198, 218
DdeI	CTNAG	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	29
FaeI	CATG	2 cut(s)	62, 134
FaiI	YATR	3 cut(s)	60, 96, 132
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	2 cut(s)	58, 130
FspBI	CTAG	1 cut(s)	235
HaeIII	GGCC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	62, 134
HinfI	GANTC	3 cut(s)	55, 137, 166
Hpy188I	TCNGA	1 cut(s)	7
HpyCH4V	TGCA	1 cut(s)	185
HpyF3I	CTNAG	1 cut(s)	189
Hsp92II	CATG	2 cut(s)	62, 134
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	2 cut(s)	84, 176
LweI	GCATC	2 cut(s)	50, 194
MaeI	CTAG	1 cut(s)	235
MluCI	AATT	3 cut(s)	45, 201, 222
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	4 cut(s)	10, 20, 103, 164
NlaIII	CATG	2 cut(s)	62, 134
NlaIV	GGNNCC	1 cut(s)	31
NspI	RCATGY	1 cut(s)	134
PciI	ACATGT	1 cut(s)	130
PfeI	GAWTC	2 cut(s)	55, 166
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PscI	ACATGT	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	29
Sau96I	GGNCC	1 cut(s)	29
SchI	GAGTC	1 cut(s)	146
SetI	ASST	1 cut(s)	220
SfaNI	GCATC	2 cut(s)	50, 194
SgeI	CNNG	9 cut(s)	22, 49, 71, 78, 83, 101, 143, 175, 207
Sse9I	AATT	3 cut(s)	45, 201, 222
SspMI	CTAG	1 cut(s)	235
TasI	AATT	3 cut(s)	45, 201, 222
TfiI	GAWTC	2 cut(s)	55, 166
TspDTI	ATGAA	2 cut(s)	47, 116
XceI	RCATGY	1 cut(s)	134
XspI	CTAG	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.