Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Reverse (-)

51890164 .. 51890463

Gene Structure 300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG293800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGATCATTTCAGAGAAGAACCACCGCGAGATCTCCAAGTACCTCTTCCAAGAGGGAGTGTGCTATGCGAAGAAGGACCGCAACATGCCGAAGCATCCAGAGATCGATGTGCAGAATCTGCAGGTGATTAAGCTGATGCAGAGCTTCATGTCCAAGGTGTATGTGAGGGAGACCTTCGCCTGGATGCACTATTACTGGTACCTCACCAATGATGGCATTAAGTTCTTGAGGAACTACCTCAACCTGCCATCGGAGATTGTGCCCAACACTCTCAAGAAGCAGGCTAAGCCCGCCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0001763 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009653 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010252 GO:0010346 GO:0015935 GO:0016043 GO:0022603 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030312 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042592 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048367 GO:0048507 GO:0048532 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0051239 GO:0060688 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0090506 GO:0097159 GO:1900618 GO:1901363 GO:1905393 GO:1905428 GO:1990904 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

S10_plectin

Protein Analysis

99

Amino Acids

11.86

Weight (kDa)

9.49

Isoelectric Point (pI)

58.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S10_plectin	PF03501	3 - 94	8.1e-42	Plectin/S10 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	112
Acc36I	ACCTGC	2 cut(s)	112, 252
Acc65I	GGTACC	1 cut(s)	198
AccB1I	GGYRCC	1 cut(s)	198
AccII	CGCG	1 cut(s)	27
AciI	CCGC	3 cut(s)	25, 79, 291
AfaI	GTAC	2 cut(s)	41, 200
AfiI	CCNNNNNNNGG	2 cut(s)	180, 250
AjnI	CCWGG	1 cut(s)	179
AjuI	GAANNNNNNNTTGG	2 cut(s)	29, 61
AluBI	AGCT	2 cut(s)	133, 144
AluI	AGCT	2 cut(s)	133, 144
Alw26I	GTCTC	1 cut(s)	164
AlwNI	CAGNNNCTG	1 cut(s)	118
Asp718I	GGTACC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	2 cut(s)	136, 196
AvaII	GGWCC	1 cut(s)	76
BaeGI	GKGCMC	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	198
BccI	CCATC	2 cut(s)	206, 256
BciT130I	CCWGG	1 cut(s)	181
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	298
BfmI	CTRYAG	1 cut(s)	119
BfuAI	ACCTGC	2 cut(s)	112, 252
BglII	AGATCT	1 cut(s)	30
BlpI	GCTNAGC	1 cut(s)	285
Bme1390I	CCNGG	1 cut(s)	181
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	181
BmsI	GCATC	3 cut(s)	103, 126, 174
Bpu1102I	GCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	2 cut(s)	247, 257
Bsa29I	ATCGAT	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 250
Bse118I	RCCGGY	1 cut(s)	293
Bse1I	ACTGG	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	181
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	2 cut(s)	94, 189
BseLI	CCNNNNNNNGG	2 cut(s)	180, 250
BseNI	ACTGG	1 cut(s)	200
BseSI	GKGCMC	1 cut(s)	264
BsgI	GTGCAG	1 cut(s)	131
Bsh1236I	CGCG	1 cut(s)	27
BshNI	GGYRCC	1 cut(s)	198
BshVI	ATCGAT	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	294
BslI	CCNNNNNNNGG	2 cut(s)	180, 250
BsmAI	GTCTC	1 cut(s)	164
Bso31I	GGTCTC	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	3 cut(s)	3, 30, 102
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	3 cut(s)	25, 79, 291
BspDI	ATCGAT	1 cut(s)	105
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	200
BspMAI	CTGCAG	1 cut(s)	123
BspMI	ACCTGC	2 cut(s)	112, 252
BspT107I	GGYRCC	1 cut(s)	198
BspTNI	GGTCTC	1 cut(s)	164
BsrFI	RCCGGY	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	293
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	3 cut(s)	3, 30, 102
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	50
BstAPI	GCANNNNNTGC	1 cut(s)	118
BstC8I	GCNNGC	3 cut(s)	282, 291, 295
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	2 cut(s)	94, 189
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	3 cut(s)	6, 33, 105
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	3 cut(s)	3, 30, 102
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 286, 290
BstNI	CCWGG	1 cut(s)	181
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	179
BstSFI	CTRYAG	1 cut(s)	119
BstSLI	GKGCMC	1 cut(s)	264
BstUI	CGCG	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
Bsu15I	ATCGAT	1 cut(s)	105
BsuTUI	ATCGAT	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	94, 189
BveI	ACCTGC	2 cut(s)	112, 252
Cac8I	GCNNGC	3 cut(s)	282, 291, 295
CaiI	CAGNNNCTG	1 cut(s)	118
Cfr10I	RCCGGY	1 cut(s)	293
Cfr13I	GGNCC	1 cut(s)	76
ClaI	ATCGAT	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	40, 199
CviAII	CATG	2 cut(s)	85, 148
CviJI	RGCY	5 cut(s)	133, 144, 284, 289, 297
CviKI_1	RGCY	5 cut(s)	133, 144, 284, 289, 297
CviQI	GTAC	2 cut(s)	40, 199
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	3 cut(s)	5, 32, 104
DpnII	GATC	3 cut(s)	3, 30, 102
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	153
Eco31I	GGTCTC	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	2 cut(s)	88, 151
FaiI	YATR	4 cut(s)	66, 86, 149, 162
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FatI	CATG	2 cut(s)	84, 147
FauI	CCCGC	1 cut(s)	298
FbaI	TGATCA	1 cut(s)	3
FokI	GGATG	2 cut(s)	81, 196
FspBI	CTAG	1 cut(s)	298
HapII	CCGG	1 cut(s)	294
Hin1II	CATG	2 cut(s)	88, 151
HinfI	GANTC	1 cut(s)	115
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	2 cut(s)	136, 196
Hpy188I	TCNGA	2 cut(s)	13, 253
Hpy188III	TCNNGA	3 cut(s)	98, 226, 274
HpyAV	CCTTC	2 cut(s)	67, 184
HpyCH4V	TGCA	4 cut(s)	112, 121, 139, 187
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 286, 290
HpyF3I	CTNAG	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	88, 151
KpnI	GGTACC	1 cut(s)	202
KroI	GCCGGC	1 cut(s)	293
KroNI	GCCGGC	1 cut(s)	295
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 30, 102
LpnPI	CCDG	7 cut(s)	107, 111, 166, 181, 193, 257, 266
LweI	GCATC	3 cut(s)	103, 126, 174
MaeI	CTAG	1 cut(s)	298
MalI	GATC	3 cut(s)	5, 32, 104
MboI	GATC	3 cut(s)	3, 30, 102
MboII	GAAGA	3 cut(s)	28, 37, 82
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	1 cut(s)	264
MnlI	CCTC	6 cut(s)	46, 53, 159, 212, 222, 248
MroNI	GCCGGC	1 cut(s)	293
MseI	TTAA	2 cut(s)	129, 219
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	181
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	3 cut(s)	118, 286, 290
NaeI	GCCGGC	1 cut(s)	295
NdeII	GATC	3 cut(s)	3, 30, 102
NgoMIV	GCCGGC	1 cut(s)	293
NlaIII	CATG	2 cut(s)	88, 151
NlaIV	GGNNCC	1 cut(s)	200
NspI	RCATGY	1 cut(s)	88
PaqCI	CACCTGC	1 cut(s)	112
PdiI	GCCGGC	1 cut(s)	295
PfeI	GAWTC	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	200
PspPI	GGNCC	1 cut(s)	76
PstI	CTGCAG	1 cut(s)	123
PstNI	CAGNNNCTG	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	30
RsaI	GTAC	2 cut(s)	41, 200
RsaNI	GTAC	2 cut(s)	40, 199
SaqAI	TTAA	2 cut(s)	129, 219
Sau3AI	GATC	3 cut(s)	3, 30, 102
Sau96I	GGNCC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	9 cut(s)	45, 126, 135, 146, 159, 176, 204, 240, 246
SfaNI	GCATC	3 cut(s)	103, 126, 174
SfcI	CTRYAG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	76
SmlI	CTYRAG	2 cut(s)	226, 272
SmoI	CTYRAG	2 cut(s)	226, 272
SsiI	CCGC	3 cut(s)	25, 79, 291
SspMI	CTAG	1 cut(s)	298
StyD4I	CCNGG	1 cut(s)	179
StyI	CCWWGG	1 cut(s)	153
TaqI	TCGA	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	2 cut(s)	129, 219
Tru9I	TTAA	2 cut(s)	129, 219
TspDTI	ATGAA	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	76
XceI	RCATGY	1 cut(s)	88
XspI	CTAG	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.