Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Forward (+)

5882754 .. 5889460

Gene Structure 6707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG075600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGTCTTCTCTGCCAAGAACTCCGGCATCGACGCCTGGGCCCACAGGCAAGTTGAGGGGGAAACACATGTCGGAGGAGAATGAAGGCCCCTACAAGGCATCAATTCCATTGATTCATGCCACAAGCCCAGAAGCAGATGTTTTACTTGCTTATGAGATGAATGGAGAGAACCTACTAATAAATCAAGGAACTTCATCCATATGCAAATCCAACTTTTATTTGAAATCCCATACATCAAGATACATTGCCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005777 GO:0006725 GO:0006778 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008482 GO:0009987 GO:0010035 GO:0010477 GO:0015994 GO:0016491 GO:0016667 GO:0016670 GO:0033013 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051186 GO:0055114 GO:0071704 GO:1901360 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00920 ko01100 ko01120 map00920 map01100 map01120

Pfam Domains

Protein Families

Mo-co_dimer Oxidored_molyb

Protein Analysis

84

Amino Acids

9.14

Weight (kDa)

8.82

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Oxidored_molyb	PF00174	25 - 63	1.1e-06	Oxidoreductase molybdopterin binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcyI	GRCGYC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	94
AflIII	ACRYGT	1 cut(s)	66
AgsI	TTSAA	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	34
AoxI	GGCC	2 cut(s)	38, 85
ApaI	GGGCCC	1 cut(s)	42
AspS9I	GGNCC	3 cut(s)	38, 39, 86
BaeGI	GKGCMC	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	42
BciT130I	CCWGG	1 cut(s)	36
Bme1390I	CCNGG	1 cut(s)	36
BmgT120I	GGNCC	3 cut(s)	38, 39, 86
BmiI	GGNNCC	2 cut(s)	40, 88
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	2 cut(s)	35, 107
BsaHI	GRCGYC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	35
BseGI	GGATG	1 cut(s)	194
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	243
BseRI	GAGGAG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	42
BshFI	GGCC	2 cut(s)	40, 87
BsiSI	CCGG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	94
BsnI	GGCC	2 cut(s)	40, 87
Bsp120I	GGGCCC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	42
BspANI	GGCC	2 cut(s)	40, 87
BspLI	GGNNCC	2 cut(s)	40, 88
BsrDI	GCAATG	1 cut(s)	243
BssECI	CCNNGG	1 cut(s)	35
BssNI	GRCGYC	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	36
BstACI	GRCGYC	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	194
BstNI	CCWGG	1 cut(s)	36
BstNSI	RCATGY	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	34
BstSLI	GKGCMC	1 cut(s)	42
BsuRI	GGCC	2 cut(s)	40, 87
BtsCI	GGATG	1 cut(s)	194
Cfr13I	GGNCC	3 cut(s)	38, 39, 86
CseI	GACGC	1 cut(s)	40
CviAII	CATG	2 cut(s)	67, 116
CviJI	RGCY	3 cut(s)	40, 87, 126
CviKI_1	RGCY	3 cut(s)	40, 87, 126
Eco24I	GRGCYC	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	34
EcoT38I	GRGCYC	1 cut(s)	42
FaeI	CATG	2 cut(s)	70, 119
FaiI	YATR	6 cut(s)	68, 117, 153, 200, 202, 231
FatI	CATG	2 cut(s)	66, 115
FauNDI	CATATG	1 cut(s)	200
FokI	GGATG	1 cut(s)	181
FriOI	GRGCYC	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	40, 87
HapII	CCGG	1 cut(s)	23
HgaI	GACGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	70, 119
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	23
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	1 cut(s)	237
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	77
HpyCH4V	TGCA	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	2 cut(s)	70, 119
LpnPI	CCDG	5 cut(s)	21, 30, 36, 48, 141
LweI	GCATC	2 cut(s)	35, 107
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	1 cut(s)	102
MmeI	TCCRAC	2 cut(s)	51, 234
MnlI	CCTC	2 cut(s)	48, 67
MslI	CAYNNNNRTG	1 cut(s)	199
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
NdeI	CATATG	1 cut(s)	200
NlaIII	CATG	2 cut(s)	70, 119
NlaIV	GGNNCC	2 cut(s)	40, 88
NspI	RCATGY	1 cut(s)	70
PciI	ACATGT	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	112
PscI	ACATGT	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	2 cut(s)	40, 88
PspOMI	GGGCCC	1 cut(s)	38
PspPI	GGNCC	3 cut(s)	38, 39, 86
RseI	CAYNNNNRTG	1 cut(s)	199
Sau96I	GGNCC	3 cut(s)	38, 39, 86
ScrFI	CCNGG	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	1 cut(s)	174
SfaNI	GCATC	2 cut(s)	35, 107
SmiMI	CAYNNNNRTG	1 cut(s)	199
Sse9I	AATT	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	34
TaqI	TCGA	1 cut(s)	29
TasI	AATT	1 cut(s)	102
TfiI	GAWTC	1 cut(s)	112
TspDTI	ATGAA	4 cut(s)	96, 104, 173, 183
XceI	RCATGY	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.