ribosomal small subunit assembly
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650 |
| fragaria_vesca | FvH4_2g15610 FvH4_5g03060 |
| malus_domestica | MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1 |
| prunus_persica | Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1 |
| pyrus_communis | pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540 |
| rosa_chinensis | RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731 |
| rosa_laevigata | RLG00000003994 RLG00000014881 |
| rosa_multiflora | Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00259000 Rroxscaffold_4G00294970 |
| rosa_rugosa | Rorug07G0036000 |
| rosa_samantha | Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100 |
| rosa_wichuraiana | Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 217, 233 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 53, 113, 176 |
| AgsI | TTSAA | 1 cut(s) | 217 |
| AjnI | CCWGG | 1 cut(s) | 118 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 225, 257 |
| Alw26I | GTCTC | 1 cut(s) | 7 |
| AoxI | GGCC | 1 cut(s) | 40 |
| ApoI | RAATTY | 2 cut(s) | 217, 233 |
| AspLEI | GCGC | 1 cut(s) | 69 |
| AspS9I | GGNCC | 3 cut(s) | 41, 104, 116 |
| AsuC2I | CCSGG | 1 cut(s) | 155 |
| AsuHPI | GGTGA | 3 cut(s) | 68, 92, 137 |
| AvaII | GGWCC | 2 cut(s) | 104, 116 |
| BanII | GRGCYC | 1 cut(s) | 154 |
| BauI | CACGAG | 1 cut(s) | 108 |
| BccI | CCATC | 3 cut(s) | 53, 83, 243 |
| BciT130I | CCWGG | 1 cut(s) | 120 |
| BciVI | GTATCC | 1 cut(s) | 247 |
| BcnI | CCSGG | 1 cut(s) | 155 |
| BcoDI | GTCTC | 1 cut(s) | 7 |
| BfmI | CTRYAG | 1 cut(s) | 163 |
| BfuI | GTATCC | 1 cut(s) | 247 |
| Bme1390I | CCNGG | 2 cut(s) | 120, 155 |
| Bme18I | GGWCC | 2 cut(s) | 104, 116 |
| BmgT120I | GGNCC | 3 cut(s) | 41, 104, 116 |
| BmiI | GGNNCC | 1 cut(s) | 151 |
| BmrFI | CCNGG | 2 cut(s) | 120, 155 |
| BpuMI | CCSGG | 1 cut(s) | 155 |
| BsaJI | CCNNGG | 2 cut(s) | 97, 153 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 53, 113, 176 |
| Bse1I | ACTGG | 1 cut(s) | 21 |
| BseBI | CCWGG | 1 cut(s) | 120 |
| BseDI | CCNNGG | 2 cut(s) | 97, 153 |
| BseGI | GGATG | 1 cut(s) | 254 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 53, 113, 176 |
| BseNI | ACTGG | 1 cut(s) | 21 |
| BseRI | GAGGAG | 2 cut(s) | 47, 162 |
| BshFI | GGCC | 1 cut(s) | 42 |
| BsiSI | CCGG | 1 cut(s) | 155 |
| BslFI | GGGAC | 1 cut(s) | 152 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 53, 113, 176 |
| BsmAI | GTCTC | 1 cut(s) | 7 |
| BsmFI | GGGAC | 1 cut(s) | 152 |
| BsnI | GGCC | 1 cut(s) | 42 |
| Bsp1286I | GDGCHC | 1 cut(s) | 154 |
| BspANI | GGCC | 1 cut(s) | 42 |
| BspLI | GGNNCC | 1 cut(s) | 151 |
| BsrI | ACTGG | 1 cut(s) | 21 |
| BssECI | CCNNGG | 2 cut(s) | 97, 153 |
| BssSI | CACGAG | 1 cut(s) | 108 |
| Bst2BI | CACGAG | 1 cut(s) | 108 |
| Bst2UI | CCWGG | 1 cut(s) | 120 |
| Bst4CI | ACNGT | 3 cut(s) | 86, 98, 259 |
| BstDSI | CCRYGG | 1 cut(s) | 97 |
| BstEII | GGTNACC | 2 cut(s) | 80, 92 |
| BstF5I | GGATG | 1 cut(s) | 254 |
| BstHHI | GCGC | 1 cut(s) | 69 |
| BstMAI | GTCTC | 1 cut(s) | 7 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 48 |
| BstNI | CCWGG | 1 cut(s) | 120 |
| BstPI | GGTNACC | 2 cut(s) | 80, 92 |
| BstSCI | CCNGG | 2 cut(s) | 118, 153 |
| BstSFI | CTRYAG | 1 cut(s) | 163 |
| BsuI | GTATCC | 1 cut(s) | 247 |
| BsuRI | GGCC | 1 cut(s) | 42 |
| BtgI | CCRYGG | 1 cut(s) | 97 |
| BtsCI | GGATG | 1 cut(s) | 254 |
| CfoI | GCGC | 1 cut(s) | 69 |
| Cfr13I | GGNCC | 3 cut(s) | 41, 104, 116 |
| CviJI | RGCY | 3 cut(s) | 42, 152, 158 |
| CviKI_1 | RGCY | 3 cut(s) | 42, 152, 158 |
| Eco24I | GRGCYC | 1 cut(s) | 154 |
| Eco47I | GGWCC | 2 cut(s) | 104, 116 |
| Eco91I | GGTNACC | 2 cut(s) | 80, 92 |
| EcoO109I | RGGNCCY | 1 cut(s) | 104 |
| EcoO65I | GGTNACC | 2 cut(s) | 80, 92 |
| EcoRII | CCWGG | 1 cut(s) | 118 |
| EcoT38I | GRGCYC | 1 cut(s) | 154 |
| FaqI | GGGAC | 1 cut(s) | 152 |
| FokI | GGATG | 1 cut(s) | 261 |
| FriOI | GRGCYC | 1 cut(s) | 154 |
| GlaI | GCGC | 1 cut(s) | 68 |
| HaeIII | GGCC | 1 cut(s) | 42 |
| HapII | CCGG | 1 cut(s) | 155 |
| HhaI | GCGC | 1 cut(s) | 69 |
| Hin6I | GCGC | 1 cut(s) | 67 |
| HinP1I | GCGC | 1 cut(s) | 67 |
| HincII | GTYRAC | 1 cut(s) | 22 |
| HindII | GTYRAC | 1 cut(s) | 22 |
| HpaII | CCGG | 1 cut(s) | 155 |
| HphI | GGTGA | 3 cut(s) | 68, 92, 137 |
| Hpy166II | GTNNAC | 2 cut(s) | 22, 116 |
| Hpy8I | GTNNAC | 2 cut(s) | 22, 116 |
| HpyAV | CCTTC | 1 cut(s) | 180 |
| HpyCH4III | ACNGT | 3 cut(s) | 86, 98, 259 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 48 |
| HspAI | GCGC | 1 cut(s) | 67 |
| LmnI | GCTCC | 1 cut(s) | 149 |
| LpnPI | CCDG | 6 cut(s) | 2, 105, 121, 132, 168, 194 |
| MaeIII | GTNAC | 4 cut(s) | 80, 92, 125, 226 |
| MhlI | GDGCHC | 1 cut(s) | 154 |
| MluCI | AATT | 3 cut(s) | 183, 217, 233 |
| MmeI | TCCRAC | 1 cut(s) | 223 |
| MnlI | CCTC | 8 cut(s) | 25, 57, 71, 95, 116, 117, 140, 239 |
| MseI | TTAA | 1 cut(s) | 198 |
| MspI | CCGG | 1 cut(s) | 155 |
| MspR9I | CCNGG | 2 cut(s) | 120, 155 |
| MvaI | CCWGG | 1 cut(s) | 120 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 48 |
| NciI | CCSGG | 1 cut(s) | 155 |
| NlaIV | GGNNCC | 1 cut(s) | 151 |
| NmuCI | GTSAC | 2 cut(s) | 80, 125 |
| PpuMI | RGGWCCY | 1 cut(s) | 104 |
| Psp5II | RGGWCCY | 1 cut(s) | 104 |
| Psp6I | CCWGG | 1 cut(s) | 118 |
| PspEI | GGTNACC | 2 cut(s) | 80, 92 |
| PspGI | CCWGG | 1 cut(s) | 118 |
| PspN4I | GGNNCC | 1 cut(s) | 151 |
| PspPI | GGNCC | 3 cut(s) | 41, 104, 116 |
| PspPPI | RGGWCCY | 1 cut(s) | 104 |
| SaqAI | TTAA | 1 cut(s) | 198 |
| Sau96I | GGNCC | 3 cut(s) | 41, 104, 116 |
| ScrFI | CCNGG | 2 cut(s) | 120, 155 |
| SduI | GDGCHC | 1 cut(s) | 154 |
| SetI | ASST | 5 cut(s) | 49, 82, 106, 127, 172 |
| SfcI | CTRYAG | 1 cut(s) | 163 |
| SinI | GGWCC | 2 cut(s) | 104, 116 |
| Sse9I | AATT | 3 cut(s) | 183, 217, 233 |
| StyD4I | CCNGG | 2 cut(s) | 118, 153 |
| TaaI | ACNGT | 3 cut(s) | 86, 98, 259 |
| TasI | AATT | 3 cut(s) | 183, 217, 233 |
| Tru1I | TTAA | 1 cut(s) | 198 |
| Tru9I | TTAA | 1 cut(s) | 198 |
| TseFI | GTSAC | 2 cut(s) | 80, 125 |
| Tsp45I | GTSAC | 2 cut(s) | 80, 125 |
| VpaK11BI | GGWCC | 2 cut(s) | 104, 116 |
| XapI | RAATTY | 2 cut(s) | 217, 233 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 35 |