Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Reverse (-)

4049713 .. 4052361

Gene Structure 2649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G037600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGATCATCCCAGAGAAGAACAGGAGAGAAATCTCCAAATACCTATTCCAAGAGGGAGTGTGCTATGCAAAGAAGGACTATAACTTGGCAAAGCACCCAGAAATCGATGTGCCAAATCTGCAGGTGATTAAGCTGATGCAGAGCTTCAAATCCAAGGAGTATGTGAGAGAAACTTTCGCTTGGATGCACTACTACTGGTACCTGACCAATGATGGTATTGAGTTTTTGAGGAACTACCTCAACCTTCCATCTGAGATTGTCCCTGCAACTTTGAAGAAGCAGGCCAAGCCTCCTGGTCGCCCCTTGGGCCCATCTGGTGACCGCCCACGTGGCCCACCTCGCTTTGATGGAGGAGAACGCAGATTTGGTGACAGGGATGGGTACCGTTCAGGTCCTCGTGCACCAGGGGGTGATTTTGGTGACAAGGGTGGAGCACCTGCTGACTACAGACCTTCTTTCGGGGGTAGTAGGCCTGGCTTTGGTCGTGGTGCTGGTGGATCTGGTGGAGCTGGTGGTTTTGGTGCTGGCCCAGCGAGCTCTGATCTCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0001763 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009653 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010252 GO:0010346 GO:0015935 GO:0016043 GO:0022603 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030312 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042592 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048367 GO:0048507 GO:0048532 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0051239 GO:0060688 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0090506 GO:0097159 GO:1900618 GO:1901363 GO:1905393 GO:1905428 GO:1990904 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

S10_plectin

Protein Analysis

184

Amino Acids

20.06

Weight (kDa)

9.59

Isoelectric Point (pI)

54.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	112, 445
Acc36I	ACCTGC	2 cut(s)	112, 445
Acc65I	GGTACC	2 cut(s)	198, 381
AccB1I	GGYRCC	2 cut(s)	198, 381
AciI	CCGC	1 cut(s)	322
AclWI	GGATC	1 cut(s)	505
AcvI	CACGTG	1 cut(s)	329
AfaI	GTAC	2 cut(s)	200, 383
AfiI	CCNNNNNNNGG	2 cut(s)	458, 479
AgsI	TTSAA	2 cut(s)	148, 274
AjnI	CCWGG	3 cut(s)	292, 403, 472
AjuI	GAANNNNNNNTTGG	4 cut(s)	29, 61, 348, 380
AluBI	AGCT	4 cut(s)	133, 144, 509, 537
AluI	AGCT	4 cut(s)	133, 144, 509, 537
Alw21I	GWGCWC	3 cut(s)	403, 436, 539
Alw44I	GTGCAC	1 cut(s)	399
AlwI	GGATC	1 cut(s)	505
AoxI	GGCC	5 cut(s)	282, 307, 331, 470, 526
ApaI	GGGCCC	1 cut(s)	311
ApaLI	GTGCAC	1 cut(s)	399
Asp718I	GGTACC	2 cut(s)	198, 381
AspS9I	GGNCC	5 cut(s)	307, 308, 332, 392, 527
AsuHPI	GGTGA	5 cut(s)	136, 329, 380, 422, 431
AvaII	GGWCC	1 cut(s)	392
BaeGI	GKGCMC	2 cut(s)	311, 403
BanI	GGYRCC	2 cut(s)	198, 381
BanII	GRGCYC	2 cut(s)	311, 539
BauI	CACGAG	1 cut(s)	396
BbrPI	CACGTG	1 cut(s)	329
Bbv12I	GWGCWC	3 cut(s)	403, 436, 539
BccI	CCATC	5 cut(s)	206, 256, 319, 341, 371
BciT130I	CCWGG	3 cut(s)	294, 405, 474
BclI	TGATCA	1 cut(s)	3
BfmI	CTRYAG	2 cut(s)	119, 445
BfuAI	ACCTGC	2 cut(s)	112, 445
BglI	GCCNNNNNGGC	2 cut(s)	306, 330
Bme1390I	CCNGG	3 cut(s)	294, 405, 474
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	5 cut(s)	307, 308, 332, 392, 527
BmiI	GGNNCC	3 cut(s)	200, 309, 383
BmrFI	CCNGG	3 cut(s)	294, 405, 474
BmsI	GCATC	2 cut(s)	126, 174
Bsa29I	ATCGAT	1 cut(s)	105
BsaAI	YACGTR	1 cut(s)	329
BsaJI	CCNNGG	3 cut(s)	153, 303, 404
Bsc4I	CCNNNNNNNGG	2 cut(s)	458, 479
Bse1I	ACTGG	1 cut(s)	200
BseBI	CCWGG	3 cut(s)	294, 405, 474
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	3 cut(s)	153, 303, 404
BseGI	GGATG	3 cut(s)	6, 189, 382
BseLI	CCNNNNNNNGG	2 cut(s)	458, 479
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	1 cut(s)	366
BseSI	GKGCMC	2 cut(s)	311, 403
BseYI	CCCAGC	1 cut(s)	529
BshFI	GGCC	5 cut(s)	284, 309, 333, 472, 528
BshNI	GGYRCC	2 cut(s)	198, 381
BshVI	ATCGAT	1 cut(s)	105
BsiHKAI	GWGCWC	3 cut(s)	403, 436, 539
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	2 cut(s)	458, 479
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	5 cut(s)	284, 309, 333, 472, 528
Bsp120I	GGGCCC	1 cut(s)	307
Bsp1286I	GDGCHC	4 cut(s)	311, 403, 436, 539
Bsp143I	GATC	3 cut(s)	3, 497, 541
BspACI	CCGC	1 cut(s)	322
BspANI	GGCC	5 cut(s)	284, 309, 333, 472, 528
BspCNI	CTCAG	1 cut(s)	244
BspDI	ATCGAT	1 cut(s)	105
BspLI	GGNNCC	3 cut(s)	200, 309, 383
BspMAI	CTGCAG	1 cut(s)	123
BspMI	ACCTGC	2 cut(s)	112, 445
BspPI	GGATC	1 cut(s)	505
BspT107I	GGYRCC	2 cut(s)	198, 381
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	3 cut(s)	153, 303, 404
BssMI	GATC	3 cut(s)	3, 497, 541
BssSI	CACGAG	1 cut(s)	396
BssT1I	CCWWGG	2 cut(s)	153, 303
Bst2BI	CACGAG	1 cut(s)	396
Bst2UI	CCWGG	3 cut(s)	294, 405, 474
Bst4CI	ACNGT	1 cut(s)	386
BstBAI	YACGTR	1 cut(s)	329
BstC8I	GCNNGC	3 cut(s)	282, 526, 535
BstDEI	CTNAG	1 cut(s)	252
BstEII	GGTNACC	1 cut(s)	317
BstF5I	GGATG	3 cut(s)	6, 189, 382
BstKTI	GATC	3 cut(s)	6, 500, 544
BstMBI	GATC	3 cut(s)	3, 497, 541
BstMWI	GCNNNNNNNGC	7 cut(s)	118, 286, 306, 330, 339, 530, 534
BstNI	CCWGG	3 cut(s)	294, 405, 474
BstPI	GGTNACC	1 cut(s)	317
BstSCI	CCNGG	3 cut(s)	292, 403, 472
BstSFI	CTRYAG	2 cut(s)	119, 445
BstSLI	GKGCMC	2 cut(s)	311, 403
BstX2I	RGATCY	1 cut(s)	497
BstYI	RGATCY	1 cut(s)	497
Bsu15I	ATCGAT	1 cut(s)	105
BsuRI	GGCC	5 cut(s)	284, 309, 333, 472, 528
BsuTUI	ATCGAT	1 cut(s)	105
BtsCI	GGATG	3 cut(s)	6, 189, 382
BveI	ACCTGC	2 cut(s)	112, 445
Cac8I	GCNNGC	3 cut(s)	282, 526, 535
Cfr13I	GGNCC	5 cut(s)	307, 308, 332, 392, 527
ClaI	ATCGAT	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	199, 382
CviQI	GTAC	2 cut(s)	199, 382
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	3 cut(s)	5, 499, 543
DpnII	GATC	3 cut(s)	3, 497, 541
Ecl136II	GAGCTC	1 cut(s)	537
Eco130I	CCWWGG	2 cut(s)	153, 303
Eco147I	AGGCCT	1 cut(s)	472
Eco24I	GRGCYC	2 cut(s)	311, 539
Eco47I	GGWCC	1 cut(s)	392
Eco53kI	GAGCTC	1 cut(s)	537
Eco72I	CACGTG	1 cut(s)	329
Eco91I	GGTNACC	1 cut(s)	317
EcoICRI	GAGCTC	1 cut(s)	537
EcoO109I	RGGNCCY	1 cut(s)	392
EcoO65I	GGTNACC	1 cut(s)	317
EcoRII	CCWGG	3 cut(s)	292, 403, 472
EcoT14I	CCWWGG	2 cut(s)	153, 303
EcoT38I	GRGCYC	2 cut(s)	311, 539
ErhI	CCWWGG	2 cut(s)	153, 303
FaiI	YATR	3 cut(s)	66, 81, 162
FaqI	GGGAC	1 cut(s)	245
FbaI	TGATCA	1 cut(s)	3
FokI	GGATG	2 cut(s)	196, 389
FriOI	GRGCYC	2 cut(s)	311, 539
GsaI	CCCAGC	1 cut(s)	533
HaeIII	GGCC	5 cut(s)	284, 309, 333, 472, 528
HphI	GGTGA	5 cut(s)	136, 329, 380, 422, 431
Hpy166II	GTNNAC	1 cut(s)	401
Hpy188I	TCNGA	2 cut(s)	253, 541
Hpy8I	GTNNAC	1 cut(s)	401
HpyAV	CCTTC	3 cut(s)	67, 254, 462
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	6 cut(s)	68, 121, 139, 187, 266, 401
HpyF10VI	GCNNNNNNNGC	7 cut(s)	118, 286, 306, 330, 339, 530, 534
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	328
KpnI	GGTACC	2 cut(s)	202, 385
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 497, 541
LmnI	GCTCC	2 cut(s)	431, 506
LweI	GCATC	2 cut(s)	126, 174
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	3 cut(s)	317, 368, 419
MalI	GATC	3 cut(s)	5, 499, 543
MboI	GATC	3 cut(s)	3, 497, 541
MboII	GAAGA	2 cut(s)	28, 286
MflI	RGATCY	1 cut(s)	497
MhlI	GDGCHC	4 cut(s)	311, 403, 436, 539
MnlI	CCTC	7 cut(s)	46, 222, 248, 300, 344, 348, 405
MseI	TTAA	1 cut(s)	129
MspR9I	CCNGG	3 cut(s)	294, 405, 474
MvaI	CCWGG	3 cut(s)	294, 405, 474
MwoI	GCNNNNNNNGC	7 cut(s)	118, 286, 306, 330, 339, 530, 534
NdeII	GATC	3 cut(s)	3, 497, 541
NlaIV	GGNNCC	3 cut(s)	200, 309, 383
NmuCI	GTSAC	3 cut(s)	317, 368, 419
PaqCI	CACCTGC	2 cut(s)	112, 445
PceI	AGGCCT	1 cut(s)	472
PmaCI	CACGTG	1 cut(s)	329
PmlI	CACGTG	1 cut(s)	329
Ppu21I	YACGTR	1 cut(s)	329
PpuMI	RGGWCCY	1 cut(s)	392
Psp124BI	GAGCTC	1 cut(s)	539
Psp5II	RGGWCCY	1 cut(s)	392
Psp6I	CCWGG	3 cut(s)	292, 403, 472
PspCI	CACGTG	1 cut(s)	329
PspEI	GGTNACC	1 cut(s)	317
PspFI	CCCAGC	1 cut(s)	529
PspGI	CCWGG	3 cut(s)	292, 403, 472
PspN4I	GGNNCC	3 cut(s)	200, 309, 383
PspOMI	GGGCCC	1 cut(s)	307
PspPI	GGNCC	5 cut(s)	307, 308, 332, 392, 527
PspPPI	RGGWCCY	1 cut(s)	392
PstI	CTGCAG	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	497
RsaI	GTAC	2 cut(s)	200, 383
RsaNI	GTAC	2 cut(s)	199, 382
SacI	GAGCTC	1 cut(s)	539
SaqAI	TTAA	1 cut(s)	129
Sau3AI	GATC	3 cut(s)	3, 497, 541
Sau96I	GGNCC	5 cut(s)	307, 308, 332, 392, 527
ScrFI	CCNGG	3 cut(s)	294, 405, 474
SduI	GDGCHC	4 cut(s)	311, 403, 436, 539
SfaNI	GCATC	2 cut(s)	126, 174
SfcI	CTRYAG	2 cut(s)	119, 445
SinI	GGWCC	1 cut(s)	392
SseBI	AGGCCT	1 cut(s)	472
SsiI	CCGC	1 cut(s)	322
SstI	GAGCTC	1 cut(s)	539
StuI	AGGCCT	1 cut(s)	472
StyD4I	CCNGG	3 cut(s)	292, 403, 472
StyI	CCWWGG	2 cut(s)	153, 303
TaaI	ACNGT	1 cut(s)	386
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	1 cut(s)	105
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TseFI	GTSAC	3 cut(s)	317, 368, 419
Tsp45I	GTSAC	3 cut(s)	317, 368, 419
VneI	GTGCAC	1 cut(s)	399
VpaK11BI	GGWCC	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.