Prupe.1G534700_v2.0.a1

ribosomal small subunit assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001582
Physical Location & Seq
Forward (+)
43698418 .. 43700730
2313 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G534700.1

Sequence Viewer

Length: 552 bp
ATGATCATCTCAGAGAAGAACAGGAGAGAAATCTCCAAATACCTATTCCAAGAGGGAGTGTGCTATGCAAAGAAGGACTATAACTTGGCAAAGCACCCAGAAATCGATGTGCCAAATCTGCAGGTGATTAAGCTGATGCAGAGCTTCAAATCCAAGGAGTATGTGAGAGAAACTTTTGCTTGGATGCACTACTACTGGTACCTGACCAATGATGGTATTGAGTTTTTGAGGAATTACCTCAACCTTCCATCTGAGATTGTCCCTGCAACTTTGAAGAAGCAGGCCAAGCCTCCTGGTCGCCCCTTGGGCCCATCTGGTGACCGCCCACGCGGCCCACCTCGCTTTGATGGAGGAGAACGCAGATTTGGTGACAGGGATGGGTACCGTTCAGGTCCTCGTGCACCAGGGGGTGATTTTGGTGACAAGGGTGGAGCACCTGCTGACTACAGACCTTCTTTCGGGGGTAGTAGGCCTGGCTTTGGTCGTGGTGCCGGTGGATCTGGTGGAGCTGGTGGTTTTGGTGCTGGCCCAGCAAGCTCTGATCTCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000028 GO:0000049 GO:0000184 GO:0000956 GO:0001763 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005856 GO:0005886 GO:0005903 GO:0005912 GO:0005924 GO:0005925 GO:0006139 GO:0006401 GO:0006402 GO:0006403 GO:0006405 GO:0006407 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006611 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007010 GO:0007044 GO:0007275 GO:0007568 GO:0007584 GO:0008092 GO:0008104 GO:0008150 GO:0008152 GO:0008307 GO:0008340 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009605 GO:0009653 GO:0009888 GO:0009892 GO:0009925 GO:0009933 GO:0009987 GO:0009991 GO:0010014 GO:0010016 GO:0010223 GO:0010252 GO:0010259 GO:0010346 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0015935 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016323 GO:0016324 GO:0016528 GO:0019222 GO:0019439 GO:0019538 GO:0022603 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030016 GO:0030054 GO:0030055 GO:0030056 GO:0030312 GO:0030506 GO:0031503 GO:0031581 GO:0031667 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034329 GO:0034330 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034655 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042383 GO:0042592 GO:0042788 GO:0042886 GO:0043034 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043292 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044449 GO:0044459 GO:0044464 GO:0045047 GO:0045111 GO:0045177 GO:0045178 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0047485 GO:0048367 GO:0048471 GO:0048507 GO:0048519 GO:0048532 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050896 GO:0051029 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051641 GO:0051649 GO:0060255 GO:0060688 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070161 GO:0070727 GO:0070925 GO:0070972 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0071944 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0090506 GO:0097064 GO:0097159 GO:0098590 GO:0098862 GO:0099080 GO:0099081 GO:0099512 GO:1900618 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1905393 GO:1905428 GO:1990904 GO:2000026 GO:2000032
KEGG Pathways
Metabolic & Signaling
ko03008 ko03010 map03008 map03010
Pfam Domains
Protein Families
CH Plectin S10_plectin

Protein Analysis

184

Amino Acids

20.05

Weight (kDa)

9.59

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 112, 445
Acc36I ACCTGC 2 cut(s) 112, 445
Acc65I GGTACC 2 cut(s) 198, 381
AccB1I GGYRCC 3 cut(s) 198, 381, 488
AccII CGCG 1 cut(s) 330
AciI CCGC 2 cut(s) 322, 330
AclWI GGATC 1 cut(s) 505
AfaI GTAC 2 cut(s) 200, 383
AfiI CCNNNNNNNGG 2 cut(s) 458, 479
AgsI TTSAA 2 cut(s) 148, 274
AjnI CCWGG 3 cut(s) 292, 403, 472
AjuI GAANNNNNNNTTGG 4 cut(s) 29, 61, 348, 380
AluBI AGCT 4 cut(s) 133, 144, 509, 537
AluI AGCT 4 cut(s) 133, 144, 509, 537
Alw21I GWGCWC 2 cut(s) 403, 436
Alw44I GTGCAC 1 cut(s) 399
AlwI GGATC 1 cut(s) 505
AoxI GGCC 5 cut(s) 282, 307, 331, 470, 526
ApaI GGGCCC 1 cut(s) 311
ApaLI GTGCAC 1 cut(s) 399
Asp718I GGTACC 2 cut(s) 198, 381
AspS9I GGNCC 5 cut(s) 307, 308, 332, 392, 527
AsuHPI GGTGA 5 cut(s) 136, 329, 380, 422, 431
AvaII GGWCC 1 cut(s) 392
BaeGI GKGCMC 2 cut(s) 311, 403
BanI GGYRCC 3 cut(s) 198, 381, 488
BanII GRGCYC 1 cut(s) 311
BauI CACGAG 1 cut(s) 396
Bbv12I GWGCWC 2 cut(s) 403, 436
BccI CCATC 5 cut(s) 206, 256, 319, 341, 371
BciT130I CCWGG 3 cut(s) 294, 405, 474
BclI TGATCA 1 cut(s) 3
BfmI CTRYAG 2 cut(s) 119, 445
BfuAI ACCTGC 2 cut(s) 112, 445
BglI GCCNNNNNGGC 2 cut(s) 306, 330
BisI GCNGC 1 cut(s) 331
BlsI GCNGC 1 cut(s) 332
Bme1390I CCNGG 3 cut(s) 294, 405, 474
Bme18I GGWCC 1 cut(s) 392
BmgT120I GGNCC 5 cut(s) 307, 308, 332, 392, 527
BmiI GGNNCC 4 cut(s) 200, 309, 383, 490
BmrFI CCNGG 3 cut(s) 294, 405, 474
BmsI GCATC 2 cut(s) 126, 174
Bsa29I ATCGAT 1 cut(s) 105
BsaJI CCNNGG 3 cut(s) 153, 303, 404
Bsc4I CCNNNNNNNGG 2 cut(s) 458, 479
Bse118I RCCGGY 1 cut(s) 491
Bse1I ACTGG 1 cut(s) 200
BseBI CCWGG 3 cut(s) 294, 405, 474
BseCI ATCGAT 1 cut(s) 105
BseDI CCNNGG 3 cut(s) 153, 303, 404
BseGI GGATG 2 cut(s) 189, 382
BseLI CCNNNNNNNGG 2 cut(s) 458, 479
BseMII CTCAG 2 cut(s) 24, 243
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 1 cut(s) 366
BseSI GKGCMC 2 cut(s) 311, 403
BseYI CCCAGC 1 cut(s) 529
Bsh1236I CGCG 1 cut(s) 330
BshFI GGCC 5 cut(s) 284, 309, 333, 472, 528
BshNI GGYRCC 3 cut(s) 198, 381, 488
BshVI ATCGAT 1 cut(s) 105
BsiHKAI GWGCWC 2 cut(s) 403, 436
BsiSI CCGG 1 cut(s) 492
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 2 cut(s) 458, 479
BsmFI GGGAC 1 cut(s) 245
BsnI GGCC 5 cut(s) 284, 309, 333, 472, 528
Bsp120I GGGCCC 1 cut(s) 307
Bsp1286I GDGCHC 3 cut(s) 311, 403, 436
Bsp143I GATC 3 cut(s) 3, 497, 541
BspACI CCGC 2 cut(s) 322, 330
BspANI GGCC 5 cut(s) 284, 309, 333, 472, 528
BspCNI CTCAG 2 cut(s) 23, 244
BspDI ATCGAT 1 cut(s) 105
BspFNI CGCG 1 cut(s) 330
BspLI GGNNCC 4 cut(s) 200, 309, 383, 490
BspMAI CTGCAG 1 cut(s) 123
BspMI ACCTGC 2 cut(s) 112, 445
BspPI GGATC 1 cut(s) 505
BspT107I GGYRCC 3 cut(s) 198, 381, 488
BsrFI RCCGGY 1 cut(s) 491
BsrI ACTGG 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 491
BssECI CCNNGG 3 cut(s) 153, 303, 404
BssMI GATC 3 cut(s) 3, 497, 541
BssSI CACGAG 1 cut(s) 396
BssT1I CCWWGG 2 cut(s) 153, 303
Bst2BI CACGAG 1 cut(s) 396
Bst2UI CCWGG 3 cut(s) 294, 405, 474
Bst4CI ACNGT 1 cut(s) 386
BstC8I GCNNGC 3 cut(s) 282, 526, 535
BstDEI CTNAG 2 cut(s) 10, 252
BstEII GGTNACC 1 cut(s) 317
BstF5I GGATG 2 cut(s) 189, 382
BstFNI CGCG 1 cut(s) 330
BstKTI GATC 3 cut(s) 6, 500, 544
BstMBI GATC 3 cut(s) 3, 497, 541
BstMWI GCNNNNNNNGC 7 cut(s) 118, 286, 306, 330, 339, 530, 534
BstNI CCWGG 3 cut(s) 294, 405, 474
BstPI GGTNACC 1 cut(s) 317
BstSCI CCNGG 3 cut(s) 292, 403, 472
BstSFI CTRYAG 2 cut(s) 119, 445
BstSLI GKGCMC 2 cut(s) 311, 403
BstUI CGCG 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 497
BstYI RGATCY 1 cut(s) 497
Bsu15I ATCGAT 1 cut(s) 105
BsuRI GGCC 5 cut(s) 284, 309, 333, 472, 528
BsuTUI ATCGAT 1 cut(s) 105
BtsCI GGATG 2 cut(s) 189, 382
BveI ACCTGC 2 cut(s) 112, 445
Cac8I GCNNGC 3 cut(s) 282, 526, 535
Cfr10I RCCGGY 1 cut(s) 491
Cfr13I GGNCC 5 cut(s) 307, 308, 332, 392, 527
ClaI ATCGAT 1 cut(s) 105
Csp6I GTAC 2 cut(s) 199, 382
CviQI GTAC 2 cut(s) 199, 382
DdeI CTNAG 2 cut(s) 10, 252
DpnI GATC 3 cut(s) 5, 499, 543
DpnII GATC 3 cut(s) 3, 497, 541
Eco130I CCWWGG 2 cut(s) 153, 303
Eco147I AGGCCT 1 cut(s) 472
Eco24I GRGCYC 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 392
Eco91I GGTNACC 1 cut(s) 317
EcoO109I RGGNCCY 1 cut(s) 392
EcoO65I GGTNACC 1 cut(s) 317
EcoRII CCWGG 3 cut(s) 292, 403, 472
EcoT14I CCWWGG 2 cut(s) 153, 303
EcoT38I GRGCYC 1 cut(s) 311
ErhI CCWWGG 2 cut(s) 153, 303
FaiI YATR 3 cut(s) 66, 81, 162
FaqI GGGAC 1 cut(s) 245
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 331
FokI GGATG 2 cut(s) 196, 389
FriOI GRGCYC 1 cut(s) 311
Fsp4HI GCNGC 1 cut(s) 331
GluI GCNGC 1 cut(s) 331
GsaI CCCAGC 1 cut(s) 533
HaeIII GGCC 5 cut(s) 284, 309, 333, 472, 528
HapII CCGG 1 cut(s) 492
HpaII CCGG 1 cut(s) 492
HphI GGTGA 5 cut(s) 136, 329, 380, 422, 431
Hpy166II GTNNAC 1 cut(s) 401
Hpy188I TCNGA 3 cut(s) 13, 253, 541
Hpy8I GTNNAC 1 cut(s) 401
HpyAV CCTTC 3 cut(s) 67, 254, 462
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4V TGCA 6 cut(s) 68, 121, 139, 187, 266, 401
HpyF10VI GCNNNNNNNGC 7 cut(s) 118, 286, 306, 330, 339, 530, 534
HpyF3I CTNAG 2 cut(s) 10, 252
KpnI GGTACC 2 cut(s) 202, 385
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 497, 541
LmnI GCTCC 2 cut(s) 431, 506
LweI GCATC 2 cut(s) 126, 174
MaeIII GTNAC 3 cut(s) 317, 368, 419
MalI GATC 3 cut(s) 5, 499, 543
MboI GATC 3 cut(s) 3, 497, 541
MboII GAAGA 2 cut(s) 28, 286
MflI RGATCY 1 cut(s) 497
MhlI GDGCHC 3 cut(s) 311, 403, 436
MluCI AATT 1 cut(s) 232
MnlI CCTC 7 cut(s) 46, 222, 248, 300, 344, 348, 405
MseI TTAA 1 cut(s) 129
MspI CCGG 1 cut(s) 492
MspR9I CCNGG 3 cut(s) 294, 405, 474
MvaI CCWGG 3 cut(s) 294, 405, 474
MvnI CGCG 1 cut(s) 330
MwoI GCNNNNNNNGC 7 cut(s) 118, 286, 306, 330, 339, 530, 534
NdeII GATC 3 cut(s) 3, 497, 541
NlaIV GGNNCC 4 cut(s) 200, 309, 383, 490
NmuCI GTSAC 3 cut(s) 317, 368, 419
PaqCI CACCTGC 2 cut(s) 112, 445
PceI AGGCCT 1 cut(s) 472
PkrI GCNGC 1 cut(s) 332
PpuMI RGGWCCY 1 cut(s) 392
Psp5II RGGWCCY 1 cut(s) 392
Psp6I CCWGG 3 cut(s) 292, 403, 472
PspEI GGTNACC 1 cut(s) 317
PspFI CCCAGC 1 cut(s) 529
PspGI CCWGG 3 cut(s) 292, 403, 472
PspN4I GGNNCC 4 cut(s) 200, 309, 383, 490
PspOMI GGGCCC 1 cut(s) 307
PspPI GGNCC 5 cut(s) 307, 308, 332, 392, 527
PspPPI RGGWCCY 1 cut(s) 392
PstI CTGCAG 1 cut(s) 123
PsuI RGATCY 1 cut(s) 497
RsaI GTAC 2 cut(s) 200, 383
RsaNI GTAC 2 cut(s) 199, 382
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 1 cut(s) 331
Sau3AI GATC 3 cut(s) 3, 497, 541
Sau96I GGNCC 5 cut(s) 307, 308, 332, 392, 527
ScrFI CCNGG 3 cut(s) 294, 405, 474
SduI GDGCHC 3 cut(s) 311, 403, 436
SfaNI GCATC 2 cut(s) 126, 174
SfcI CTRYAG 2 cut(s) 119, 445
SinI GGWCC 1 cut(s) 392
Sse9I AATT 1 cut(s) 232
SseBI AGGCCT 1 cut(s) 472
SsiI CCGC 2 cut(s) 322, 330
StuI AGGCCT 1 cut(s) 472
StyD4I CCNGG 3 cut(s) 292, 403, 472
StyI CCWWGG 2 cut(s) 153, 303
TaaI ACNGT 1 cut(s) 386
TaqI TCGA 1 cut(s) 105
TasI AATT 1 cut(s) 232
TauI GCSGC 1 cut(s) 333
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TseFI GTSAC 3 cut(s) 317, 368, 419
Tsp45I GTSAC 3 cut(s) 317, 368, 419
VneI GTGCAC 1 cut(s) 399
VpaK11BI GGWCC 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.