Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Reverse (-)

59076527 .. 59078687

Gene Structure 2161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014881

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCCGAAGCGTCCACAGATCGATGTGCAGAATCTGCAGGTGATTAAGCTGATGCAGAGCTTCAAGTCCAAGGAGTATGTGAGGGAGACCTTCGCCTGGATGCACTATTACTGGTACCTCACCAATGATGGCATTGAGTTCTTGAGGAACTTCCTCAACCTTCCATCGGAGATTGTGCCCAACACTCTCAAGAAGCAGGCTAAGCCCGCCGGGCTCGACGCTGTGAAGCTGATCGGAATGATAGTCAAGGCGGCGGCCATGGCGAGAATGCACAAGAAGAACTATAGGCAATTTGCACAGCATCTGAAGCTGATCGGGAATTTATTGGAGCAACTCAAGATCTCGGAGCTCAAGAGGTATCTGGAGACTCGAGAGCCGTTGGAGCAGCTGGAGGAGGCTCTGAGGAGGTCATACATTTTGGTCAACAGCTGTCAAGACCGGAGCTATTTGTATCTGCTTGCAATGGGATGTAATGGAGGATCAGAGATGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

165

Amino Acids

19.19

Weight (kDa)

9.49

Isoelectric Point (pI)

60.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S10_plectin	PF03501	2 - 66	3.8e-29	Plectin/S10 domain
MCAfunc	PF19584	77 - 158	5.6e-44	MCAfunc domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	28
Acc36I	ACCTGC	1 cut(s)	28
Acc65I	GGTACC	1 cut(s)	114
AccB1I	GGYRCC	1 cut(s)	114
AciI	CCGC	3 cut(s)	207, 251, 254
AclWI	GGATC	1 cut(s)	487
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	319
AcuI	CTGAAG	1 cut(s)	326
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	2 cut(s)	96, 166
AgsI	TTSAA	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	8 cut(s)	49, 60, 229, 310, 349, 388, 429, 444
AluI	AGCT	8 cut(s)	49, 60, 229, 310, 349, 388, 429, 444
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	2 cut(s)	80, 359
AlwI	GGATC	1 cut(s)	487
AlwNI	CAGNNNCTG	2 cut(s)	34, 304
Ama87I	CYCGRG	1 cut(s)	369
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	385
ApoI	RAATTY	1 cut(s)	319
Asp718I	GGTACC	1 cut(s)	114
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	2 cut(s)	52, 112
AvaI	CYCGRG	1 cut(s)	369
BaeGI	GKGCMC	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	114
BanII	GRGCYC	2 cut(s)	216, 351
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	3 cut(s)	122, 172, 481
BceAI	ACGGC	1 cut(s)	361
BciT130I	CCWGG	1 cut(s)	97
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	2 cut(s)	80, 359
BfmI	CTRYAG	2 cut(s)	35, 283
BfuAI	ACCTGC	1 cut(s)	28
BglI	GCCNNNNNGGC	1 cut(s)	211
BglII	AGATCT	1 cut(s)	339
BisI	GCNGC	3 cut(s)	252, 255, 386
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	3 cut(s)	253, 256, 387
Bme1390I	CCNGG	2 cut(s)	97, 211
BmeT110I	CYCGRG	1 cut(s)	369
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	2 cut(s)	97, 211
BmsI	GCATC	3 cut(s)	42, 90, 310
BpmI	CTGGAG	2 cut(s)	383, 410
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	4 cut(s)	163, 173, 320, 335
BpuMI	CCSGG	1 cut(s)	211
Bsa29I	ATCGAT	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	69, 258
BsaWI	WCCGGW	1 cut(s)	438
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 166
Bse1I	ACTGG	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	97
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	2 cut(s)	69, 258
BseGI	GGATG	2 cut(s)	105, 473
BseLI	CCNNNNNNNGG	2 cut(s)	96, 166
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	1 cut(s)	392
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	2 cut(s)	407, 418
BseSI	GKGCMC	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	397
BsgI	GTGCAG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	257
BshNI	GGYRCC	1 cut(s)	114
BshVI	ATCGAT	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	351
BsiHKCI	CYCGRG	1 cut(s)	369
BsiSI	CCGG	2 cut(s)	210, 439
BslI	CCNNNNNNNGG	2 cut(s)	96, 166
BsmAI	GTCTC	2 cut(s)	80, 359
BsmI	GAATGC	1 cut(s)	273
BsnI	GGCC	1 cut(s)	257
Bso31I	GGTCTC	1 cut(s)	80
BsoBI	CYCGRG	1 cut(s)	369
Bsp1286I	GDGCHC	3 cut(s)	180, 216, 351
Bsp143I	GATC	5 cut(s)	18, 231, 312, 339, 479
Bsp1720I	GCTNAGC	1 cut(s)	201
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	3 cut(s)	207, 251, 254
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	1 cut(s)	393
BspDI	ATCGAT	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	116
BspMAI	CTGCAG	1 cut(s)	39
BspMI	ACCTGC	1 cut(s)	28
BspPI	GGATC	1 cut(s)	487
BspT107I	GGYRCC	1 cut(s)	114
BspTNI	GGTCTC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	468
BsrI	ACTGG	1 cut(s)	116
BssECI	CCNNGG	2 cut(s)	69, 258
BssMI	GATC	5 cut(s)	18, 231, 312, 339, 479
BssT1I	CCWWGG	2 cut(s)	69, 258
Bst2UI	CCWGG	1 cut(s)	97
BstAPI	GCANNNNNTGC	1 cut(s)	34
BstC8I	GCNNGC	3 cut(s)	198, 207, 459
BstDEI	CTNAG	2 cut(s)	201, 401
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	2 cut(s)	105, 473
BstKTI	GATC	5 cut(s)	21, 234, 315, 342, 482
BstMAI	GTCTC	2 cut(s)	80, 359
BstMBI	GATC	5 cut(s)	18, 231, 312, 339, 479
BstMWI	GCNNNNNNNGC	7 cut(s)	34, 202, 206, 211, 260, 307, 382
BstNI	CCWGG	1 cut(s)	97
BstSCI	CCNGG	2 cut(s)	95, 209
BstSFI	CTRYAG	2 cut(s)	35, 283
BstSLI	GKGCMC	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	397
BstX2I	RGATCY	1 cut(s)	339
BstYI	RGATCY	1 cut(s)	339
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	257
BsuTUI	ATCGAT	1 cut(s)	21
BtgI	CCRYGG	1 cut(s)	258
BtsCI	GGATG	2 cut(s)	105, 473
BveI	ACCTGC	1 cut(s)	28
Cac8I	GCNNGC	3 cut(s)	198, 207, 459
CaiI	CAGNNNCTG	2 cut(s)	34, 304
ClaI	ATCGAT	1 cut(s)	21
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	2 cut(s)	259, 492
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	2 cut(s)	201, 401
DpnI	GATC	5 cut(s)	20, 233, 314, 341, 481
DpnII	GATC	5 cut(s)	18, 231, 312, 339, 479
EaeI	YGGCCR	1 cut(s)	255
Ecl136II	GAGCTC	1 cut(s)	349
Eco130I	CCWWGG	2 cut(s)	69, 258
Eco24I	GRGCYC	2 cut(s)	216, 351
Eco31I	GGTCTC	1 cut(s)	80
Eco53kI	GAGCTC	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	369
EcoICRI	GAGCTC	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	95
EcoT14I	CCWWGG	2 cut(s)	69, 258
EcoT38I	GRGCYC	2 cut(s)	216, 351
ErhI	CCWWGG	2 cut(s)	69, 258
FaeI	CATG	2 cut(s)	262, 495
FaiI	YATR	5 cut(s)	78, 260, 285, 412, 493
FatI	CATG	2 cut(s)	258, 491
FauI	CCCGC	1 cut(s)	214
Fnu4HI	GCNGC	3 cut(s)	252, 255, 386
FokI	GGATG	2 cut(s)	112, 480
FriOI	GRGCYC	2 cut(s)	216, 351
Fsp4HI	GCNGC	3 cut(s)	252, 255, 386
GluI	GCNGC	3 cut(s)	252, 255, 386
GsuI	CTGGAG	2 cut(s)	383, 410
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	2 cut(s)	210, 439
HgaI	GACGC	1 cut(s)	227
Hin1II	CATG	2 cut(s)	262, 495
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	2 cut(s)	31, 367
HpaII	CCGG	2 cut(s)	210, 439
HphI	GGTGA	2 cut(s)	52, 112
Hpy166II	GTNNAC	2 cut(s)	14, 424
Hpy188I	TCNGA	6 cut(s)	169, 236, 306, 346, 402, 484
Hpy188III	TCNNGA	8 cut(s)	142, 190, 316, 337, 352, 362, 371, 434
Hpy8I	GTNNAC	2 cut(s)	14, 424
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	2 cut(s)	100, 170
HpyCH4V	TGCA	7 cut(s)	28, 37, 55, 103, 271, 296, 461
HpyF10VI	GCNNNNNNNGC	7 cut(s)	34, 202, 206, 211, 260, 307, 382
HpyF3I	CTNAG	2 cut(s)	201, 401
Hsp92II	CATG	2 cut(s)	262, 495
KpnI	GGTACC	1 cut(s)	118
Kzo9I	GATC	5 cut(s)	18, 231, 312, 339, 479
LmnI	GCTCC	4 cut(s)	328, 346, 382, 441
LpnPI	CCDG	9 cut(s)	23, 82, 97, 109, 182, 223, 347, 374, 452
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	3 cut(s)	42, 90, 310
MalI	GATC	5 cut(s)	20, 233, 314, 341, 481
MboI	GATC	5 cut(s)	18, 231, 312, 339, 479
MboII	GAAGA	1 cut(s)	289
MflI	RGATCY	1 cut(s)	339
MhlI	GDGCHC	3 cut(s)	180, 216, 351
MluCI	AATT	2 cut(s)	290, 319
MlyI	GAGTC	1 cut(s)	361
MmeI	TCCRAC	1 cut(s)	360
MseI	TTAA	1 cut(s)	45
MspA1I	CMGCKG	2 cut(s)	388, 429
MspI	CCGG	2 cut(s)	210, 439
MspR9I	CCNGG	2 cut(s)	97, 211
Mva1269I	GAATGC	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	7 cut(s)	34, 202, 206, 211, 260, 307, 382
NciI	CCSGG	1 cut(s)	211
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	5 cut(s)	18, 231, 312, 339, 479
NlaIII	CATG	2 cut(s)	262, 495
NlaIV	GGNNCC	1 cut(s)	116
PaeR7I	CTCGAG	1 cut(s)	369
PaqCI	CACCTGC	1 cut(s)	28
PctI	GAATGC	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	3 cut(s)	253, 256, 387
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	351
Psp6I	CCWGG	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	116
PstI	CTGCAG	1 cut(s)	39
PstNI	CAGNNNCTG	2 cut(s)	34, 304
PsuI	RGATCY	1 cut(s)	339
PvuII	CAGCTG	2 cut(s)	388, 429
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SacI	GAGCTC	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	3 cut(s)	252, 255, 386
Sau3AI	GATC	5 cut(s)	18, 231, 312, 339, 479
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	2 cut(s)	97, 211
SduI	GDGCHC	3 cut(s)	180, 216, 351
SfaNI	GCATC	3 cut(s)	42, 90, 310
SfcI	CTRYAG	2 cut(s)	35, 283
Sfr274I	CTCGAG	1 cut(s)	369
SlaI	CTCGAG	1 cut(s)	369
SmlI	CTYRAG	5 cut(s)	142, 188, 335, 350, 369
SmoI	CTYRAG	5 cut(s)	142, 188, 335, 350, 369
Sse9I	AATT	2 cut(s)	290, 319
SsiI	CCGC	3 cut(s)	207, 251, 254
SstI	GAGCTC	1 cut(s)	351
StyD4I	CCNGG	2 cut(s)	95, 209
StyI	CCWWGG	2 cut(s)	69, 258
TaqI	TCGA	3 cut(s)	21, 216, 370
TasI	AATT	2 cut(s)	290, 319
TauI	GCSGC	2 cut(s)	254, 257
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TseI	GCWGC	1 cut(s)	385
XapI	RAATTY	1 cut(s)	319
XhoI	CTCGAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.