Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Reverse (-)

16609021 .. 16610692

Gene Structure 1672 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G41520.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGATCATATCAGAGACTAACCGCCGTGAGATCTCCAAGTACCTCTTCAAAGAGGGTGTTTTGTTTGCTAAAAAGGATTTCAACTTACCACAACATCCTTTGATTGAGAGTGTTCCAAATCTGCAAGTTATCAAGTTGATGCAGAGTTTCAAATCTAAGGAATATGTGAGAGAGACCTTTGCTTGGATGCATTACTACTGGTTCCTCACAAATGAAGGTATTGACTTTCTCAGGACTTACCTTAATCTCCCATCTGAGATTGTTCCTGCTACTTTGAAGAAGCAACAGAAGCCTCTTGGTCGACCTTTTGGAGGTGGTGGTGACCGTCCCCGTGGCCCTCCTCGTGGTGATGGAGAGAGGAGGTTTGGTGACAGAGATGGATACCGTGGAGGTCCTAAATCAGGTGGAGAGTATGGTGACAAGGCTGGAGCACCTGCTGATTACCAGCCTGGCTTCAGGGGTGGAGCTGGTGGAGCTAGGCAAGGGTTTGGTCGTGGAGCTGGTGGTTTCGGTGGTGGTGCTGCTGGATCTGATCTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0001763 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009653 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010252 GO:0010346 GO:0015935 GO:0016020 GO:0016043 GO:0022603 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030312 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042592 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048367 GO:0048507 GO:0048532 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0051239 GO:0060688 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0090506 GO:0097159 GO:1900618 GO:1901363 GO:1905393 GO:1905428 GO:1990904 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

S10_plectin

Protein Analysis

180

Amino Acids

19.73

Weight (kDa)

9.72

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S10_plectin	PF03501	1 - 49	3.4e-22	Plectin/S10 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	442
Acc36I	ACCTGC	1 cut(s)	442
AccI	GTMKAC	1 cut(s)	301
AciI	CCGC	1 cut(s)	22
AclWI	GGATC	1 cut(s)	535
AcuI	CTGAAG	1 cut(s)	439
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	4 cut(s)	183, 311, 344, 401
AgsI	TTSAA	4 cut(s)	49, 82, 151, 277
AjnI	CCWGG	1 cut(s)	448
AjuI	GAANNNNNNNTTGG	2 cut(s)	29, 61
AluBI	AGCT	3 cut(s)	467, 476, 500
AluI	AGCT	3 cut(s)	467, 476, 500
Alw21I	GWGCWC	1 cut(s)	433
Alw26I	GTCTC	2 cut(s)	8, 167
AlwI	GGATC	1 cut(s)	535
AoxI	GGCC	1 cut(s)	334
ApeKI	GCWGC	1 cut(s)	521
AspS9I	GGNCC	2 cut(s)	335, 392
AsuHPI	GGTGA	4 cut(s)	332, 359, 380, 428
AvaII	GGWCC	1 cut(s)	392
BauI	CACGAG	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	433
BbvI	GCAGC	1 cut(s)	508
BccI	CCATC	3 cut(s)	259, 344, 371
BceAI	ACGGC	1 cut(s)	9
BciT130I	CCWGG	1 cut(s)	450
BciVI	GTATCC	1 cut(s)	374
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	8, 167
BfaI	CTAG	1 cut(s)	477
BfuAI	ACCTGC	1 cut(s)	442
BfuI	GTATCC	1 cut(s)	374
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	1 cut(s)	522
BlsI	GCNGC	1 cut(s)	523
Bme1390I	CCNGG	1 cut(s)	450
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	2 cut(s)	335, 392
BmiI	GGNNCC	1 cut(s)	203
BmrFI	CCNGG	1 cut(s)	450
BmsI	GCATC	2 cut(s)	129, 177
BpmI	CTGGAG	1 cut(s)	447
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	331, 385
BsaXI	ACNNNNNCTCC	2 cut(s)	352, 382
Bsc4I	CCNNNNNNNGG	4 cut(s)	183, 311, 344, 401
Bse1I	ACTGG	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	2 cut(s)	331, 385
BseGI	GGATG	2 cut(s)	94, 192
BseLI	CCNNNNNNNGG	4 cut(s)	183, 311, 344, 401
BseMII	CTCAG	2 cut(s)	244, 246
BseNI	ACTGG	1 cut(s)	203
BseRI	GAGGAG	2 cut(s)	330, 373
BseXI	GCAGC	1 cut(s)	508
BshFI	GGCC	1 cut(s)	336
BsiHKAI	GWGCWC	1 cut(s)	433
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	4 cut(s)	183, 311, 344, 401
BsmAI	GTCTC	2 cut(s)	8, 167
BsmFI	GGGAC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	336
Bso31I	GGTCTC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	433
Bsp143I	GATC	4 cut(s)	3, 30, 527, 532
BspACI	CCGC	1 cut(s)	22
BspANI	GGCC	1 cut(s)	336
BspCNI	CTCAG	2 cut(s)	243, 247
BspLI	GGNNCC	1 cut(s)	203
BspMI	ACCTGC	1 cut(s)	442
BspPI	GGATC	1 cut(s)	535
BspTNI	GGTCTC	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	331, 385
BssMI	GATC	4 cut(s)	3, 30, 527, 532
BssSI	CACGAG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	2 cut(s)	326, 386
Bst6I	CTCTTC	1 cut(s)	50
BstDEI	CTNAG	3 cut(s)	156, 230, 255
BstDSI	CCRYGG	2 cut(s)	331, 385
BstEII	GGTNACC	1 cut(s)	320
BstENI	CCTNNNNNAGG	2 cut(s)	309, 399
BstF5I	GGATG	2 cut(s)	94, 192
BstKTI	GATC	4 cut(s)	6, 33, 530, 535
BstMAI	GTCTC	2 cut(s)	8, 167
BstMBI	GATC	4 cut(s)	3, 30, 527, 532
BstMWI	GCNNNNNNNGC	2 cut(s)	289, 473
BstNI	CCWGG	1 cut(s)	450
BstPI	GGTNACC	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	448
BstV1I	GCAGC	1 cut(s)	508
BstX2I	RGATCY	2 cut(s)	30, 527
BstYI	RGATCY	2 cut(s)	30, 527
BsuI	GTATCC	1 cut(s)	374
BsuRI	GGCC	1 cut(s)	336
BtgI	CCRYGG	2 cut(s)	331, 385
BtsCI	GGATG	2 cut(s)	94, 192
BveI	ACCTGC	1 cut(s)	442
Cfr13I	GGNCC	2 cut(s)	335, 392
Csp6I	GTAC	1 cut(s)	40
CviJI	RGCY	8 cut(s)	292, 336, 425, 448, 453, 467, 476, 500
CviKI_1	RGCY	8 cut(s)	292, 336, 425, 448, 453, 467, 476, 500
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	3 cut(s)	156, 230, 255
DpnI	GATC	4 cut(s)	5, 32, 529, 534
DpnII	GATC	4 cut(s)	3, 30, 527, 532
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco31I	GGTCTC	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	392
Eco57I	CTGAAG	1 cut(s)	439
Eco91I	GGTNACC	1 cut(s)	320
EcoNI	CCTNNNNNAGG	2 cut(s)	309, 399
EcoO109I	RGGNCCY	1 cut(s)	392
EcoO65I	GGTNACC	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	448
EcoT22I	ATGCAT	1 cut(s)	192
FaiI	YATR	3 cut(s)	8, 165, 414
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FaqI	GGGAC	1 cut(s)	312
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	522
FokI	GGATG	2 cut(s)	81, 199
Fsp4HI	GCNGC	1 cut(s)	522
FspBI	CTAG	1 cut(s)	477
GluI	GCNGC	1 cut(s)	522
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	1 cut(s)	336
HincII	GTYRAC	1 cut(s)	302
HindII	GTYRAC	1 cut(s)	302
HphI	GGTGA	4 cut(s)	332, 359, 380, 428
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	3 cut(s)	13, 256, 532
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	1 cut(s)	302
HpyAV	CCTTC	1 cut(s)	209
HpyCH4III	ACNGT	2 cut(s)	326, 386
HpyCH4V	TGCA	3 cut(s)	124, 142, 190
HpyF10VI	GCNNNNNNNGC	2 cut(s)	289, 473
HpyF3I	CTNAG	3 cut(s)	156, 230, 255
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 30, 527, 532
LmnI	GCTCC	4 cut(s)	428, 464, 473, 497
Lsp1109I	GCAGC	1 cut(s)	508
LweI	GCATC	2 cut(s)	129, 177
MaeI	CTAG	1 cut(s)	477
MaeIII	GTNAC	3 cut(s)	320, 368, 416
MalI	GATC	4 cut(s)	5, 32, 529, 534
MboI	GATC	4 cut(s)	3, 30, 527, 532
MboII	GAAGA	3 cut(s)	37, 289, 527
MflI	RGATCY	2 cut(s)	30, 527
MhlI	GDGCHC	1 cut(s)	433
Mph1103I	ATGCAT	1 cut(s)	192
MseI	TTAA	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	450
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	2 cut(s)	289, 473
NdeII	GATC	4 cut(s)	3, 30, 527, 532
NlaIV	GGNNCC	1 cut(s)	203
NmuCI	GTSAC	3 cut(s)	320, 368, 416
NsiI	ATGCAT	1 cut(s)	192
PaqCI	CACCTGC	1 cut(s)	442
PkrI	GCNGC	1 cut(s)	523
PpuMI	RGGWCCY	1 cut(s)	392
Psp5II	RGGWCCY	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	448
PspEI	GGTNACC	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	1 cut(s)	203
PspPI	GGNCC	2 cut(s)	335, 392
PspPPI	RGGWCCY	1 cut(s)	392
PsuI	RGATCY	2 cut(s)	30, 527
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SalI	GTCGAC	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	1 cut(s)	522
Sau3AI	GATC	4 cut(s)	3, 30, 527, 532
Sau96I	GGNCC	2 cut(s)	335, 392
ScrFI	CCNGG	1 cut(s)	450
SduI	GDGCHC	1 cut(s)	433
SfaNI	GCATC	2 cut(s)	129, 177
SinI	GGWCC	1 cut(s)	392
SsiI	CCGC	1 cut(s)	22
SspMI	CTAG	1 cut(s)	477
StyD4I	CCNGG	1 cut(s)	448
TaaI	ACNGT	2 cut(s)	326, 386
TaqI	TCGA	1 cut(s)	301
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TseFI	GTSAC	3 cut(s)	320, 368, 416
TseI	GCWGC	1 cut(s)	521
Tsp45I	GTSAC	3 cut(s)	320, 368, 416
TspDTI	ATGAA	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	392
XagI	CCTNNNNNAGG	2 cut(s)	309, 399
XmiI	GTMKAC	1 cut(s)	301
XspI	CTAG	1 cut(s)	477
Zsp2I	ATGCAT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.