Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Reverse (-)

63467325 .. 63470573

Gene Structure 3249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G035730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTATAAAATTTTCGATTTTAATTATAAAGACATTGGCCTATACCAATTTGGAGTGTGCTATGCGAAGAAGGACTACAACATGCCGAAGCATCCAGAGATCGACGTGCCGAATCTGCAGGTGATTAAGCTGATGCAGAGCTTCAAGTCCAAGGAGTATGTGAGGGAGACCTTCGCCTGGATGCACTATTACTGGTACCTCACCAATGATGGCATTGAGTTCTTGAGGAACTACCTCAACCTGCCCTCGGAGATTGTGCCCAACACTCTCAAGAAGCAGGCTAAGCCCGCCGGCCGTCCTTTCGGCGGCCCACCAGGCGACCGCCCTCGTTTCTGGTGCATTTGTTCAACACTGATCGACTGGAATTTGATTTGGTTTTTGTTGATGTGCATTAATGGCCCACCTCGCTTTGGTGATGGAGAGCGCAGATTTGGAGGTGACCGTGATGGTTACCGTGGAGGTCCTCGTGGTGGACCAGGAGGTGACTTTGGCGGGGACAAGGGAGGAGCCCCTGCTGACTACAGACCTTCTTTCGGGGTAATTTTTCTGTTGCTTACTTTAGGTTCTAATATCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

192

Amino Acids

21.93

Weight (kDa)

8.97

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S10_plectin	PF03501	14 - 93	3.6e-37	Plectin/S10 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	27
AarI	CACCTGC	1 cut(s)	109
Acc36I	ACCTGC	2 cut(s)	109, 249
Acc65I	GGTACC	1 cut(s)	195
AccB1I	GGYRCC	1 cut(s)	195
AciI	CCGC	4 cut(s)	288, 306, 322, 492
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	2 cut(s)	9, 364
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	6 cut(s)	177, 247, 305, 410, 470, 533
AgsI	TTSAA	2 cut(s)	145, 348
AjiI	CACGTC	1 cut(s)	106
AjnI	CCWGG	3 cut(s)	176, 313, 475
AluBI	AGCT	2 cut(s)	130, 141
AluI	AGCT	2 cut(s)	130, 141
Alw26I	GTCTC	1 cut(s)	161
AoxI	GGCC	4 cut(s)	37, 292, 307, 397
ApoI	RAATTY	2 cut(s)	9, 364
AseI	ATTAAT	1 cut(s)	393
Asp718I	GGTACC	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	4 cut(s)	308, 398, 461, 473
AsuHPI	GGTGA	5 cut(s)	133, 193, 425, 449, 494
AvaII	GGWCC	2 cut(s)	461, 473
BaeGI	GKGCMC	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	195
BanII	GRGCYC	1 cut(s)	511
BarI	GAAGNNNNNNTAC	2 cut(s)	59, 91
BauI	CACGAG	1 cut(s)	465
BccI	CCATC	3 cut(s)	203, 410, 440
BceAI	ACGGC	1 cut(s)	279
BciT130I	CCWGG	3 cut(s)	178, 315, 477
BcoDI	GTCTC	1 cut(s)	161
BfmI	CTRYAG	2 cut(s)	116, 520
BfuAI	ACCTGC	2 cut(s)	109, 249
BglI	GCCNNNNNGGC	1 cut(s)	315
BisI	GCNGC	1 cut(s)	307
BlpI	GCTNAGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	308
Bme1390I	CCNGG	3 cut(s)	178, 315, 477
Bme18I	GGWCC	2 cut(s)	461, 473
BmgBI	CACGTC	1 cut(s)	106
BmgT120I	GGNCC	4 cut(s)	308, 398, 461, 473
BmiI	GGNNCC	2 cut(s)	197, 508
BmrFI	CCNGG	3 cut(s)	178, 315, 477
BmsI	GCATC	3 cut(s)	100, 123, 171
Bpu1102I	GCTNAGC	1 cut(s)	282
BpuEI	CTTGAG	2 cut(s)	244, 254
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	3 cut(s)	150, 246, 454
Bsc4I	CCNNNNNNNGG	6 cut(s)	177, 247, 305, 410, 470, 533
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	2 cut(s)	197, 365
BseBI	CCWGG	3 cut(s)	178, 315, 477
BseDI	CCNNGG	3 cut(s)	150, 246, 454
BseGI	GGATG	2 cut(s)	91, 186
BseLI	CCNNNNNNNGG	6 cut(s)	177, 247, 305, 410, 470, 533
BseNI	ACTGG	2 cut(s)	197, 365
BseRI	GAGGAG	1 cut(s)	519
BseSI	GKGCMC	1 cut(s)	261
BseX3I	CGGCCG	1 cut(s)	292
Bsh1285I	CGRYCG	2 cut(s)	295, 322
BshFI	GGCC	4 cut(s)	39, 294, 309, 399
BshNI	GGYRCC	1 cut(s)	195
BsiEI	CGRYCG	2 cut(s)	295, 322
BsiSI	CCGG	1 cut(s)	291
BslFI	GGGAC	1 cut(s)	509
BslI	CCNNNNNNNGG	6 cut(s)	177, 247, 305, 410, 470, 533
BsmAI	GTCTC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	509
BsnI	GGCC	4 cut(s)	39, 294, 309, 399
Bso31I	GGTCTC	1 cut(s)	161
Bsp1286I	GDGCHC	2 cut(s)	261, 511
Bsp143I	GATC	2 cut(s)	99, 354
Bsp1720I	GCTNAGC	1 cut(s)	282
BspACI	CCGC	4 cut(s)	288, 306, 322, 492
BspANI	GGCC	4 cut(s)	39, 294, 309, 399
BspLI	GGNNCC	2 cut(s)	197, 508
BspMAI	CTGCAG	1 cut(s)	120
BspMI	ACCTGC	2 cut(s)	109, 249
BspT107I	GGYRCC	1 cut(s)	195
BspTNI	GGTCTC	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	290
BsrI	ACTGG	2 cut(s)	197, 365
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	3 cut(s)	150, 246, 454
BssMI	GATC	2 cut(s)	99, 354
BssSI	CACGAG	1 cut(s)	465
BssT1I	CCWWGG	1 cut(s)	150
Bst2BI	CACGAG	1 cut(s)	465
Bst2UI	CCWGG	3 cut(s)	178, 315, 477
Bst4CI	ACNGT	2 cut(s)	443, 455
BstC8I	GCNNGC	3 cut(s)	279, 288, 292
BstDEI	CTNAG	2 cut(s)	282, 576
BstDSI	CCRYGG	1 cut(s)	454
BstEII	GGTNACC	2 cut(s)	437, 449
BstF5I	GGATG	2 cut(s)	91, 186
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	2 cut(s)	102, 357
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	2 cut(s)	99, 354
BstMCI	CGRYCG	2 cut(s)	295, 322
BstMWI	GCNNNNNNNGC	6 cut(s)	115, 283, 287, 315, 396, 405
BstNI	CCWGG	3 cut(s)	178, 315, 477
BstNSI	RCATGY	1 cut(s)	85
BstPI	GGTNACC	2 cut(s)	437, 449
BstSCI	CCNGG	3 cut(s)	176, 313, 475
BstSFI	CTRYAG	2 cut(s)	116, 520
BstSLI	GKGCMC	1 cut(s)	261
BstZI	CGGCCG	1 cut(s)	292
BsuRI	GGCC	4 cut(s)	39, 294, 309, 399
BtgI	CCRYGG	1 cut(s)	454
BtrI	CACGTC	1 cut(s)	106
BtsCI	GGATG	2 cut(s)	91, 186
BtsIMutI	CAGTG	1 cut(s)	350
BveI	ACCTGC	2 cut(s)	109, 249
Cac8I	GCNNGC	3 cut(s)	279, 288, 292
CfoI	GCGC	1 cut(s)	426
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	4 cut(s)	308, 398, 461, 473
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	1 cut(s)	82
CviJI	RGCY	9 cut(s)	39, 130, 141, 281, 286, 294, 309, 399, 509
CviKI_1	RGCY	9 cut(s)	39, 130, 141, 281, 286, 294, 309, 399, 509
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	2 cut(s)	282, 576
DpnI	GATC	2 cut(s)	101, 356
DpnII	GATC	2 cut(s)	99, 354
EaeI	YGGCCR	1 cut(s)	292
EagI	CGGCCG	1 cut(s)	292
EclXI	CGGCCG	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	511
Eco31I	GGTCTC	1 cut(s)	161
Eco47I	GGWCC	2 cut(s)	461, 473
Eco52I	CGGCCG	1 cut(s)	292
Eco91I	GGTNACC	2 cut(s)	437, 449
EcoO109I	RGGNCCY	1 cut(s)	461
EcoO65I	GGTNACC	2 cut(s)	437, 449
EcoRII	CCWGG	3 cut(s)	176, 313, 475
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	1 cut(s)	85
FaiI	YATR	6 cut(s)	6, 27, 43, 63, 83, 159
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	1 cut(s)	81
FauI	CCCGC	2 cut(s)	295, 485
Fnu4HI	GCNGC	1 cut(s)	307
FokI	GGATG	2 cut(s)	78, 193
FriOI	GRGCYC	1 cut(s)	511
Fsp4HI	GCNGC	1 cut(s)	307
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	1 cut(s)	307
HaeIII	GGCC	4 cut(s)	39, 294, 309, 399
HapII	CCGG	1 cut(s)	291
HhaI	GCGC	1 cut(s)	426
Hin1II	CATG	1 cut(s)	85
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	5 cut(s)	133, 193, 425, 449, 494
Hpy166II	GTNNAC	1 cut(s)	473
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	3 cut(s)	95, 223, 271
Hpy8I	GTNNAC	1 cut(s)	473
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	3 cut(s)	64, 181, 537
HpyCH4III	ACNGT	2 cut(s)	443, 455
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	5 cut(s)	118, 136, 184, 339, 390
HpyF10VI	GCNNNNNNNGC	6 cut(s)	115, 283, 287, 315, 396, 405
HpyF3I	CTNAG	2 cut(s)	282, 576
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	1 cut(s)	85
HspAI	GCGC	1 cut(s)	424
KpnI	GGTACC	1 cut(s)	199
KroI	GCCGGC	1 cut(s)	290
KroNI	GCCGGC	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	99, 354
LmnI	GCTCC	1 cut(s)	506
LweI	GCATC	3 cut(s)	100, 123, 171
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	3 cut(s)	437, 449, 482
MalI	GATC	2 cut(s)	101, 356
MboI	GATC	2 cut(s)	99, 354
MboII	GAAGA	1 cut(s)	79
MhlI	GDGCHC	2 cut(s)	261, 511
MluCI	AATT	5 cut(s)	9, 22, 47, 364, 540
MroNI	GCCGGC	1 cut(s)	290
MseI	TTAA	3 cut(s)	21, 126, 393
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	3 cut(s)	178, 315, 477
MvaI	CCWGG	3 cut(s)	178, 315, 477
MwoI	GCNNNNNNNGC	6 cut(s)	115, 283, 287, 315, 396, 405
NaeI	GCCGGC	1 cut(s)	292
NdeII	GATC	2 cut(s)	99, 354
NgoMIV	GCCGGC	1 cut(s)	290
NlaIII	CATG	1 cut(s)	85
NlaIV	GGNNCC	2 cut(s)	197, 508
NmuCI	GTSAC	2 cut(s)	437, 482
NspI	RCATGY	1 cut(s)	85
PaqCI	CACCTGC	1 cut(s)	109
PdiI	GCCGGC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	308
PpuMI	RGGWCCY	1 cut(s)	461
PshBI	ATTAAT	1 cut(s)	393
PsiI	TTATAA	1 cut(s)	27
Psp5II	RGGWCCY	1 cut(s)	461
Psp6I	CCWGG	3 cut(s)	176, 313, 475
PspEI	GGTNACC	2 cut(s)	437, 449
PspGI	CCWGG	3 cut(s)	176, 313, 475
PspN4I	GGNNCC	2 cut(s)	197, 508
PspPI	GGNCC	4 cut(s)	308, 398, 461, 473
PspPPI	RGGWCCY	1 cut(s)	461
PstI	CTGCAG	1 cut(s)	120
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SaqAI	TTAA	3 cut(s)	21, 126, 393
SatI	GCNGC	1 cut(s)	307
Sau3AI	GATC	2 cut(s)	99, 354
Sau96I	GGNCC	4 cut(s)	308, 398, 461, 473
ScrFI	CCNGG	3 cut(s)	178, 315, 477
SduI	GDGCHC	2 cut(s)	261, 511
SfaNI	GCATC	3 cut(s)	100, 123, 171
SfcI	CTRYAG	2 cut(s)	116, 520
SinI	GGWCC	2 cut(s)	461, 473
SmlI	CTYRAG	2 cut(s)	223, 269
SmoI	CTYRAG	2 cut(s)	223, 269
Sse9I	AATT	5 cut(s)	9, 22, 47, 364, 540
SsiI	CCGC	4 cut(s)	288, 306, 322, 492
StyD4I	CCNGG	3 cut(s)	176, 313, 475
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	2 cut(s)	443, 455
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	3 cut(s)	15, 102, 357
TasI	AATT	5 cut(s)	9, 22, 47, 364, 540
TauI	GCSGC	1 cut(s)	309
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	3 cut(s)	21, 126, 393
Tru9I	TTAA	3 cut(s)	21, 126, 393
TscAI	CASTG	1 cut(s)	357
TseFI	GTSAC	2 cut(s)	437, 482
Tsp45I	GTSAC	2 cut(s)	437, 482
TspRI	CASTG	1 cut(s)	357
VpaK11BI	GGWCC	2 cut(s)	461, 473
VspI	ATTAAT	1 cut(s)	393
XapI	RAATTY	2 cut(s)	9, 364
XceI	RCATGY	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.