Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Forward (+)

10319808 .. 10321541

Gene Structure 1734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1084900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGATCATTTCTGAGAAGAATCGTCGGGAGATCTCCAAGTACCTGTTCCAAGAGGGAGTTTGCTACGCGAAGAAGGACTATAACTTGGCGAAGCATCCCGACATCGACGTCCCAAATCTGCAGGTGATTAAGCTGATGCAGAGCTTCAAGTCCAAGGAGTATGTGAGGGAGACGTTTGCTTGGATGCACTACTACTGGTACCTTACCAATGACGGTATCGAGTTCTTGAGGACTTATCTCAATCTCCCTTCTGAGATTGTCCCTGCTACTCTCAAGAAGCAGGCCAAGCCTCCTGGCCGCCCCATGGGCCCCTCCGGTGACCGCCCCCGTGGCCCATCTCGCTTTGATGGAGAACGCAGATTCGGTGGTGACAGGGATGGGTACCGTGGAGGACCTCGTGCACCTGGTGGTGACTTTGGGGACAAGGGTGGAGCTCCTGCTGATTATAGGCCTTCTTTTGGGGGTCCCGGTGGAAGGCCTGGCTTTGGTCGTGGAGCTGGTGGTTTTGGTGCAGGCCCAGCTAGCTCTAATCAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0001763 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009653 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010252 GO:0010346 GO:0015935 GO:0016043 GO:0022603 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030312 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042592 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048367 GO:0048507 GO:0048532 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0051239 GO:0060688 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0090506 GO:0097159 GO:1900618 GO:1901363 GO:1905393 GO:1905428 GO:1990904 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

S10_plectin

Protein Analysis

180

Amino Acids

19.76

Weight (kDa)

9.68

Isoelectric Point (pI)

52.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S10_plectin	PF03501	3 - 94	1.6e-42	Plectin/S10 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	112
AasI	GACNNNNNNGTC	1 cut(s)	107
AatII	GACGTC	1 cut(s)	111
Acc36I	ACCTGC	1 cut(s)	112
Acc65I	GGTACC	2 cut(s)	198, 381
AccB1I	GGYRCC	2 cut(s)	198, 381
AccII	CGCG	1 cut(s)	68
AciI	CCGC	2 cut(s)	298, 322
AcoI	YGGCCR	1 cut(s)	295
AcyI	GRCGYC	1 cut(s)	108
AdeI	CACNNNGTG	1 cut(s)	407
AfaI	GTAC	3 cut(s)	41, 200, 383
AfiI	CCNNNNNNNGG	4 cut(s)	304, 458, 474, 485
AgsI	TTSAA	1 cut(s)	148
AjnI	CCWGG	3 cut(s)	292, 403, 478
AjuI	GAANNNNNNNTTGG	2 cut(s)	29, 61
AluBI	AGCT	6 cut(s)	133, 144, 434, 497, 521, 525
AluI	AGCT	6 cut(s)	133, 144, 434, 497, 521, 525
Alw21I	GWGCWC	2 cut(s)	403, 436
Alw26I	GTCTC	1 cut(s)	164
Alw44I	GTGCAC	1 cut(s)	399
AoxI	GGCC	7 cut(s)	282, 295, 307, 331, 449, 476, 514
ApaI	GGGCCC	1 cut(s)	311
ApaLI	GTGCAC	1 cut(s)	399
Asp718I	GGTACC	2 cut(s)	198, 381
AspS9I	GGNCC	6 cut(s)	307, 308, 332, 392, 464, 515
AsuC2I	CCSGG	1 cut(s)	468
AsuHPI	GGTGA	4 cut(s)	136, 329, 380, 422
AsuNHI	GCTAGC	1 cut(s)	521
AvaII	GGWCC	2 cut(s)	392, 464
BaeGI	GKGCMC	2 cut(s)	311, 403
BanI	GGYRCC	2 cut(s)	198, 381
BanII	GRGCYC	2 cut(s)	311, 436
BauI	CACGAG	1 cut(s)	396
Bbv12I	GWGCWC	2 cut(s)	403, 436
BccI	CCATC	3 cut(s)	341, 343, 371
BciT130I	CCWGG	3 cut(s)	294, 405, 480
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	468
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	522
BfmI	CTRYAG	1 cut(s)	119
BfuAI	ACCTGC	1 cut(s)	112
BglI	GCCNNNNNGGC	2 cut(s)	306, 330
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	1 cut(s)	298
BlsI	GCNGC	1 cut(s)	299
Bme1390I	CCNGG	4 cut(s)	294, 405, 468, 480
Bme18I	GGWCC	2 cut(s)	392, 464
BmgT120I	GGNCC	6 cut(s)	307, 308, 332, 392, 464, 515
BmiI	GGNNCC	6 cut(s)	200, 309, 310, 383, 465, 466
BmrFI	CCNGG	4 cut(s)	294, 405, 468, 480
BmsI	GCATC	3 cut(s)	103, 126, 174
BmtI	GCTAGC	1 cut(s)	525
BpuEI	CTTGAG	2 cut(s)	247, 257
BpuMI	CCSGG	1 cut(s)	468
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	4 cut(s)	153, 303, 328, 385
BsaWI	WCCGGW	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	4 cut(s)	304, 458, 474, 485
Bse1I	ACTGG	1 cut(s)	200
BseBI	CCWGG	3 cut(s)	294, 405, 480
BseDI	CCNNGG	4 cut(s)	153, 303, 328, 385
BseGI	GGATG	3 cut(s)	94, 189, 382
BseLI	CCNNNNNNNGG	4 cut(s)	304, 458, 474, 485
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	200
BseSI	GKGCMC	2 cut(s)	311, 403
BseYI	CCCAGC	1 cut(s)	517
BsgI	GTGCAG	1 cut(s)	531
Bsh1236I	CGCG	1 cut(s)	68
BshFI	GGCC	7 cut(s)	284, 297, 309, 333, 451, 478, 516
BshNI	GGYRCC	2 cut(s)	198, 381
BsiHKAI	GWGCWC	2 cut(s)	403, 436
BsiSI	CCGG	2 cut(s)	315, 468
BslFI	GGGAC	4 cut(s)	95, 245, 434, 450
BslI	CCNNNNNNNGG	4 cut(s)	304, 458, 474, 485
BsmAI	GTCTC	1 cut(s)	164
BsmBI	CGTCTC	1 cut(s)	164
BsmFI	GGGAC	4 cut(s)	95, 245, 434, 450
BsnI	GGCC	7 cut(s)	284, 297, 309, 333, 451, 478, 516
Bsp120I	GGGCCC	1 cut(s)	307
Bsp1286I	GDGCHC	3 cut(s)	311, 403, 436
Bsp143I	GATC	2 cut(s)	3, 30
Bsp19I	CCATGG	1 cut(s)	303
BspACI	CCGC	2 cut(s)	298, 322
BspANI	GGCC	7 cut(s)	284, 297, 309, 333, 451, 478, 516
BspCNI	CTCAG	2 cut(s)	4, 244
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	6 cut(s)	200, 309, 310, 383, 465, 466
BspMAI	CTGCAG	1 cut(s)	123
BspMI	ACCTGC	1 cut(s)	112
BspOI	GCTAGC	1 cut(s)	525
BspT107I	GGYRCC	2 cut(s)	198, 381
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	4 cut(s)	153, 303, 328, 385
BssMI	GATC	2 cut(s)	3, 30
BssNI	GRCGYC	1 cut(s)	108
BssSI	CACGAG	1 cut(s)	396
BssT1I	CCWWGG	2 cut(s)	153, 303
Bst2BI	CACGAG	1 cut(s)	396
Bst2UI	CCWGG	3 cut(s)	294, 405, 480
Bst4CI	ACNGT	2 cut(s)	215, 386
BstACI	GRCGYC	1 cut(s)	108
BstC8I	GCNNGC	3 cut(s)	282, 514, 523
BstDEI	CTNAG	2 cut(s)	12, 252
BstDSI	CCRYGG	3 cut(s)	303, 328, 385
BstEII	GGTNACC	1 cut(s)	317
BstF5I	GGATG	3 cut(s)	94, 189, 382
BstFNI	CGCG	1 cut(s)	68
BstKTI	GATC	2 cut(s)	6, 33
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	2 cut(s)	3, 30
BstMWI	GCNNNNNNNGC	6 cut(s)	286, 306, 330, 339, 518, 522
BstNI	CCWGG	3 cut(s)	294, 405, 480
BstPI	GGTNACC	1 cut(s)	317
BstSCI	CCNGG	4 cut(s)	292, 403, 466, 478
BstSFI	CTRYAG	1 cut(s)	119
BstSLI	GKGCMC	2 cut(s)	311, 403
BstUI	CGCG	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BsuRI	GGCC	7 cut(s)	284, 297, 309, 333, 451, 478, 516
BtgI	CCRYGG	3 cut(s)	303, 328, 385
BtsCI	GGATG	3 cut(s)	94, 189, 382
BveI	ACCTGC	1 cut(s)	112
Cac8I	GCNNGC	3 cut(s)	282, 514, 523
Cfr13I	GGNCC	6 cut(s)	307, 308, 332, 392, 464, 515
CsiI	ACCWGGT	1 cut(s)	403
Csp6I	GTAC	3 cut(s)	40, 199, 382
CviAII	CATG	1 cut(s)	304
CviQI	GTAC	3 cut(s)	40, 199, 382
DdeI	CTNAG	2 cut(s)	12, 252
DpnI	GATC	2 cut(s)	5, 32
DpnII	GATC	2 cut(s)	3, 30
DraIII	CACNNNGTG	1 cut(s)	407
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
EaeI	YGGCCR	1 cut(s)	295
Ecl136II	GAGCTC	1 cut(s)	434
Eco130I	CCWWGG	2 cut(s)	153, 303
Eco147I	AGGCCT	2 cut(s)	451, 478
Eco24I	GRGCYC	2 cut(s)	311, 436
Eco47I	GGWCC	2 cut(s)	392, 464
Eco53kI	GAGCTC	1 cut(s)	434
Eco91I	GGTNACC	1 cut(s)	317
EcoICRI	GAGCTC	1 cut(s)	434
EcoO109I	RGGNCCY	3 cut(s)	308, 392, 464
EcoO65I	GGTNACC	1 cut(s)	317
EcoRII	CCWGG	3 cut(s)	292, 403, 478
EcoT14I	CCWWGG	2 cut(s)	153, 303
EcoT38I	GRGCYC	2 cut(s)	311, 436
ErhI	CCWWGG	2 cut(s)	153, 303
Esp3I	CGTCTC	1 cut(s)	164
FaeI	CATG	1 cut(s)	307
FaiI	YATR	4 cut(s)	81, 162, 305, 447
FaqI	GGGAC	4 cut(s)	95, 245, 434, 450
FatI	CATG	1 cut(s)	303
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	298
FokI	GGATG	3 cut(s)	81, 196, 389
FriOI	GRGCYC	2 cut(s)	311, 436
Fsp4HI	GCNGC	1 cut(s)	298
FspBI	CTAG	1 cut(s)	522
GluI	GCNGC	1 cut(s)	298
GsaI	CCCAGC	1 cut(s)	521
HaeIII	GGCC	7 cut(s)	284, 297, 309, 333, 451, 478, 516
HapII	CCGG	2 cut(s)	315, 468
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	1 cut(s)	307
HinfI	GANTC	2 cut(s)	19, 360
HpaII	CCGG	2 cut(s)	315, 468
HphI	GGTGA	4 cut(s)	136, 329, 380, 422
Hpy166II	GTNNAC	1 cut(s)	401
Hpy188I	TCNGA	2 cut(s)	13, 253
Hpy188III	TCNNGA	4 cut(s)	26, 98, 226, 274
Hpy8I	GTNNAC	1 cut(s)	401
Hpy99I	CGWCG	2 cut(s)	27, 110
HpyAV	CCTTC	4 cut(s)	67, 258, 462, 468
HpyCH4III	ACNGT	2 cut(s)	215, 386
HpyCH4IV	ACGT	2 cut(s)	108, 173
HpyCH4V	TGCA	5 cut(s)	121, 139, 187, 401, 512
HpyF10VI	GCNNNNNNNGC	6 cut(s)	286, 306, 330, 339, 518, 522
HpyF3I	CTNAG	2 cut(s)	12, 252
HpySE526I	ACGT	2 cut(s)	108, 173
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	307
KflI	GGGWCCC	1 cut(s)	464
KpnI	GGTACC	2 cut(s)	202, 385
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 30
LmnI	GCTCC	3 cut(s)	431, 439, 494
LweI	GCATC	3 cut(s)	103, 126, 174
MabI	ACCWGGT	1 cut(s)	403
MaeI	CTAG	1 cut(s)	522
MaeII	ACGT	2 cut(s)	108, 173
MaeIII	GTNAC	3 cut(s)	317, 368, 410
MalI	GATC	2 cut(s)	5, 32
MboI	GATC	2 cut(s)	3, 30
MboII	GAAGA	2 cut(s)	28, 82
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	3 cut(s)	311, 403, 436
MnlI	CCTC	7 cut(s)	46, 159, 222, 300, 322, 383, 405
MseI	TTAA	2 cut(s)	129, 538
MspI	CCGG	2 cut(s)	315, 468
MspR9I	CCNGG	4 cut(s)	294, 405, 468, 480
MvaI	CCWGG	3 cut(s)	294, 405, 480
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	6 cut(s)	286, 306, 330, 339, 518, 522
NciI	CCSGG	1 cut(s)	468
NcoI	CCATGG	1 cut(s)	303
NdeII	GATC	2 cut(s)	3, 30
NheI	GCTAGC	1 cut(s)	521
NlaIII	CATG	1 cut(s)	307
NlaIV	GGNNCC	6 cut(s)	200, 309, 310, 383, 465, 466
NmuCI	GTSAC	3 cut(s)	317, 368, 410
PaqCI	CACCTGC	1 cut(s)	112
PceI	AGGCCT	2 cut(s)	451, 478
PfeI	GAWTC	2 cut(s)	19, 360
PkrI	GCNGC	1 cut(s)	299
PpuMI	RGGWCCY	2 cut(s)	392, 464
Psp124BI	GAGCTC	1 cut(s)	436
Psp5II	RGGWCCY	2 cut(s)	392, 464
Psp6I	CCWGG	3 cut(s)	292, 403, 478
PspEI	GGTNACC	1 cut(s)	317
PspFI	CCCAGC	1 cut(s)	517
PspGI	CCWGG	3 cut(s)	292, 403, 478
PspN4I	GGNNCC	6 cut(s)	200, 309, 310, 383, 465, 466
PspOMI	GGGCCC	1 cut(s)	307
PspPI	GGNCC	6 cut(s)	307, 308, 332, 392, 464, 515
PspPPI	RGGWCCY	2 cut(s)	392, 464
PstI	CTGCAG	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	30
RsaI	GTAC	3 cut(s)	41, 200, 383
RsaNI	GTAC	3 cut(s)	40, 199, 382
SacI	GAGCTC	1 cut(s)	436
SaqAI	TTAA	2 cut(s)	129, 538
SatI	GCNGC	1 cut(s)	298
Sau3AI	GATC	2 cut(s)	3, 30
Sau96I	GGNCC	6 cut(s)	307, 308, 332, 392, 464, 515
ScrFI	CCNGG	4 cut(s)	294, 405, 468, 480
SduI	GDGCHC	3 cut(s)	311, 403, 436
SexAI	ACCWGGT	1 cut(s)	403
SfaNI	GCATC	3 cut(s)	103, 126, 174
SfcI	CTRYAG	1 cut(s)	119
SinI	GGWCC	2 cut(s)	392, 464
SmlI	CTYRAG	2 cut(s)	226, 272
SmoI	CTYRAG	2 cut(s)	226, 272
SseBI	AGGCCT	2 cut(s)	451, 478
SsiI	CCGC	2 cut(s)	298, 322
SspMI	CTAG	1 cut(s)	522
SstI	GAGCTC	1 cut(s)	436
StuI	AGGCCT	2 cut(s)	451, 478
StyD4I	CCNGG	4 cut(s)	292, 403, 466, 478
StyI	CCWWGG	2 cut(s)	153, 303
TaaI	ACNGT	2 cut(s)	215, 386
TaiI	ACGT	2 cut(s)	111, 176
TaqI	TCGA	2 cut(s)	105, 219
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	2 cut(s)	19, 360
Tru1I	TTAA	2 cut(s)	129, 538
Tru9I	TTAA	2 cut(s)	129, 538
TseFI	GTSAC	3 cut(s)	317, 368, 410
Tsp45I	GTSAC	3 cut(s)	317, 368, 410
VneI	GTGCAC	1 cut(s)	399
VpaK11BI	GGWCC	2 cut(s)	392, 464
XspI	CTAG	1 cut(s)	522
ZraI	GACGTC	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.