Rh2DG673000
MYB Family

Transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
89493706 .. 89512740
19035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG673000.1

Sequence Viewer

Length: 858 bp
ATGCCGAAGCATCCAGAGATCGACGTGCCGAATCTGCAGGTGATTAAGCTGATGCAGAGCTTCAAGTCCAAGGAGTATGTGAGGGAGACCTTCGCCTGGATGCACTATTACTGGTACCTCACCAATGATGGCATTGAGTTCTTGAGGAACTACCTCAACCTGCCCTCGGAGATTGTGCCCAACACTCTCAAGAAGCAGGCTAAGCCCGCCGGCCGTCCTTTCGGCGGCCCACCAGGCGACCGCCCTCGTTTCTGGTGCATTTGTTCAACACTGATCAACTGGAATTTGATTTGGTTTTTGTTGATGTGCATTAATGGCCCACCTCGCTTTGGTGATGGAGAGCGCAGATTTGGAGGTGACCGTGATGGTTACCGTGGAGGTCCTCGTGGTGGACCAGGAGGTGACTTTGGCGGGGACAAGGGAGGAGCCCCTGCTGACTACAGACCTTCTTTCGGGCAACATTCGATTCTTGAATTTGCAGCTCCGGAGCAGTCTAATACTCTTGCTATAGGCTCTCATAACTCTGCCTTCCTACAGCAGGACATATTATTGGATGGCACTACAATTGTAGTTGGGCAACTCTCTTTGAATTCGAAGCAAGAAAACCACGGTGCCCAAATTGAAGAGAACGGCGATCTTCTGAAGATAGATGTTCTGCTGCGAGGCCTTCTGCTTGTTCTTGAAGGTGTCGTGCCAGAAGAAGGTGACGGTGTTGATGTGGTCCTTGTCCGGCAAGACTGGGAAGCGCGTCTCGACGAGGCAGAGGGCTTTGTACTAATTTTGGAGGAGGTCGCGGCGGGCCGGGAGGGACGATCTGGTTGGCGCTCCAAGTCGGAGCGGAGCTGCTTGAGGGTTTAG

Protein Analysis

285

Amino Acids

31.74

Weight (kDa)

5.37

Isoelectric Point (pI)

53.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S10_plectin PF03501 1 - 66 6.9e-31 Plectin/S10 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 28
Acc36I ACCTGC 2 cut(s) 28, 168
Acc65I GGTACC 1 cut(s) 114
AccB1I GGYRCC 2 cut(s) 114, 611
AccBSI CCGCTC 1 cut(s) 838
AccII CGCG 2 cut(s) 748, 794
AccIII TCCGGA 1 cut(s) 484
AciI CCGC 7 cut(s) 207, 225, 241, 411, 794, 797, 838
AcoI YGGCCR 1 cut(s) 211
AcsI RAATTY 3 cut(s) 283, 473, 589
AcuI CTGAAG 1 cut(s) 662
AfaI GTAC 2 cut(s) 116, 774
AfiI CCNNNNNNNGG 8 cut(s) 96, 166, 224, 329, 389, 452, 538, 701
AgsI TTSAA 6 cut(s) 64, 267, 473, 589, 623, 683
AjiI CACGTC 1 cut(s) 25
AjnI CCWGG 3 cut(s) 95, 232, 394
AluBI AGCT 4 cut(s) 49, 60, 482, 843
AluI AGCT 4 cut(s) 49, 60, 482, 843
Alw26I GTCTC 2 cut(s) 80, 755
Aor13HI TCCGGA 1 cut(s) 484
AoxI GGCC 5 cut(s) 211, 226, 316, 664, 799
ApeKI GCWGC 3 cut(s) 479, 658, 843
ApoI RAATTY 3 cut(s) 283, 473, 589
AseI ATTAAT 1 cut(s) 312
Asp718I GGTACC 1 cut(s) 114
AspLEI GCGC 3 cut(s) 345, 748, 825
AspS9I GGNCC 6 cut(s) 227, 317, 380, 392, 721, 799
AsuC2I CCSGG 1 cut(s) 803
AsuHPI GGTGA 6 cut(s) 52, 112, 344, 368, 413, 716
AsuII TTCGAA 1 cut(s) 593
AvaII GGWCC 3 cut(s) 380, 392, 721
BaeGI GKGCMC 2 cut(s) 180, 616
BanI GGYRCC 2 cut(s) 114, 611
BanII GRGCYC 1 cut(s) 430
BauI CACGAG 1 cut(s) 384
BbvI GCAGC 3 cut(s) 491, 645, 830
BccI CCATC 4 cut(s) 122, 329, 359, 548
BceAI ACGGC 2 cut(s) 198, 646
BciT130I CCWGG 3 cut(s) 97, 234, 396
BclI TGATCA 1 cut(s) 273
BcnI CCSGG 1 cut(s) 803
BcoDI GTCTC 2 cut(s) 80, 755
BfmI CTRYAG 4 cut(s) 35, 439, 507, 533
BfoI RGCGCY 1 cut(s) 826
BfuAI ACCTGC 2 cut(s) 28, 168
BglI GCCNNNNNGGC 1 cut(s) 234
BisI GCNGC 5 cut(s) 226, 480, 659, 795, 844
BlpI GCTNAGC 1 cut(s) 201
BlsI GCNGC 5 cut(s) 227, 481, 660, 796, 845
Bme1390I CCNGG 4 cut(s) 97, 234, 396, 803
Bme18I GGWCC 3 cut(s) 380, 392, 721
BmgBI CACGTC 1 cut(s) 25
BmgT120I GGNCC 6 cut(s) 227, 317, 380, 392, 721, 799
BmiI GGNNCC 3 cut(s) 116, 427, 613
BmrFI CCNGG 4 cut(s) 97, 234, 396, 803
BmrI ACTGGG 1 cut(s) 748
BmsI GCATC 3 cut(s) 19, 42, 90
BmuI ACTGGG 1 cut(s) 748
Bpu1102I GCTNAGC 1 cut(s) 201
Bpu14I TTCGAA 1 cut(s) 593
BpuEI CTTGAG 2 cut(s) 163, 173
BpuMI CCSGG 1 cut(s) 803
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 4 cut(s) 69, 165, 373, 607
BsaWI WCCGGW 1 cut(s) 484
Bsc4I CCNNNNNNNGG 8 cut(s) 96, 166, 224, 329, 389, 452, 538, 701
Bse118I RCCGGY 1 cut(s) 209
Bse1I ACTGG 3 cut(s) 116, 284, 743
BseAI TCCGGA 1 cut(s) 484
BseBI CCWGG 3 cut(s) 97, 234, 396
BseDI CCNNGG 4 cut(s) 69, 165, 373, 607
BseGI GGATG 3 cut(s) 10, 105, 559
BseLI CCNNNNNNNGG 8 cut(s) 96, 166, 224, 329, 389, 452, 538, 701
BseNI ACTGG 3 cut(s) 116, 284, 743
BseRI GAGGAG 2 cut(s) 438, 800
BseSI GKGCMC 2 cut(s) 180, 616
BseX3I CGGCCG 1 cut(s) 211
BseXI GCAGC 3 cut(s) 491, 645, 830
Bsh1236I CGCG 2 cut(s) 748, 794
Bsh1285I CGRYCG 2 cut(s) 214, 241
BshFI GGCC 5 cut(s) 213, 228, 318, 666, 801
BshNI GGYRCC 2 cut(s) 114, 611
BsiEI CGRYCG 2 cut(s) 214, 241
BsiSI CCGG 4 cut(s) 210, 485, 730, 802
BslFI GGGAC 2 cut(s) 428, 822
BslI CCNNNNNNNGG 8 cut(s) 96, 166, 224, 329, 389, 452, 538, 701
BsmAI GTCTC 2 cut(s) 80, 755
BsmBI CGTCTC 1 cut(s) 755
BsmFI GGGAC 2 cut(s) 428, 822
BsnI GGCC 5 cut(s) 213, 228, 318, 666, 801
Bso31I GGTCTC 1 cut(s) 80
Bsp119I TTCGAA 1 cut(s) 593
Bsp1286I GDGCHC 3 cut(s) 180, 430, 616
Bsp13I TCCGGA 1 cut(s) 484
Bsp143I GATC 4 cut(s) 18, 273, 634, 812
Bsp1720I GCTNAGC 1 cut(s) 201
BspACI CCGC 7 cut(s) 207, 225, 241, 411, 794, 797, 838
BspANI GGCC 5 cut(s) 213, 228, 318, 666, 801
BspEI TCCGGA 1 cut(s) 484
BspFNI CGCG 2 cut(s) 748, 794
BspLI GGNNCC 3 cut(s) 116, 427, 613
BspMAI CTGCAG 1 cut(s) 39
BspMI ACCTGC 2 cut(s) 28, 168
BspT104I TTCGAA 1 cut(s) 593
BspT107I GGYRCC 2 cut(s) 114, 611
BspTNI GGTCTC 1 cut(s) 80
BsrBI CCGCTC 1 cut(s) 838
BsrFI RCCGGY 1 cut(s) 209
BsrI ACTGG 3 cut(s) 116, 284, 743
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 4 cut(s) 69, 165, 373, 607
BssMI GATC 4 cut(s) 18, 273, 634, 812
BssSI CACGAG 1 cut(s) 384
BssT1I CCWWGG 1 cut(s) 69
Bst2BI CACGAG 1 cut(s) 384
Bst2UI CCWGG 3 cut(s) 97, 234, 396
Bst4CI ACNGT 4 cut(s) 362, 374, 611, 710
Bst6I CTCTTC 1 cut(s) 618
BstBI TTCGAA 1 cut(s) 593
BstC8I GCNNGC 4 cut(s) 198, 207, 211, 799
BstDEI CTNAG 1 cut(s) 201
BstDSI CCRYGG 2 cut(s) 373, 607
BstEII GGTNACC 2 cut(s) 356, 368
BstENI CCTNNNNNAGG 1 cut(s) 536
BstF5I GGATG 3 cut(s) 10, 105, 559
BstFNI CGCG 2 cut(s) 748, 794
BstH2I RGCGCY 1 cut(s) 826
BstHHI GCGC 3 cut(s) 345, 748, 825
BstKTI GATC 4 cut(s) 21, 276, 637, 815
BstMAI GTCTC 2 cut(s) 80, 755
BstMBI GATC 4 cut(s) 18, 273, 634, 812
BstMCI CGRYCG 2 cut(s) 214, 241
BstMWI GCNNNNNNNGC 6 cut(s) 34, 202, 206, 234, 315, 324
BstNI CCWGG 3 cut(s) 97, 234, 396
BstPI GGTNACC 2 cut(s) 356, 368
BstSCI CCNGG 4 cut(s) 95, 232, 394, 801
BstSFI CTRYAG 4 cut(s) 35, 439, 507, 533
BstSLI GKGCMC 2 cut(s) 180, 616
BstUI CGCG 2 cut(s) 748, 794
BstV1I GCAGC 3 cut(s) 491, 645, 830
BstZI CGGCCG 1 cut(s) 211
BsuRI GGCC 5 cut(s) 213, 228, 318, 666, 801
BtgI CCRYGG 2 cut(s) 373, 607
BtrI CACGTC 1 cut(s) 25
BtsCI GGATG 3 cut(s) 10, 105, 559
BtsIMutI CAGTG 1 cut(s) 269
BveI ACCTGC 2 cut(s) 28, 168
Cac8I GCNNGC 4 cut(s) 198, 207, 211, 799
CfoI GCGC 3 cut(s) 345, 748, 825
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 6 cut(s) 227, 317, 380, 392, 721, 799
CseI GACGC 1 cut(s) 737
Csp6I GTAC 2 cut(s) 115, 773
CviQI GTAC 2 cut(s) 115, 773
DdeI CTNAG 1 cut(s) 201
DpnI GATC 4 cut(s) 20, 275, 636, 814
DpnII GATC 4 cut(s) 18, 273, 634, 812
EaeI YGGCCR 1 cut(s) 211
EagI CGGCCG 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 618
EarI CTCTTC 1 cut(s) 618
EclXI CGGCCG 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 69
Eco147I AGGCCT 1 cut(s) 666
Eco24I GRGCYC 1 cut(s) 430
Eco31I GGTCTC 1 cut(s) 80
Eco47I GGWCC 3 cut(s) 380, 392, 721
Eco52I CGGCCG 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 662
Eco91I GGTNACC 2 cut(s) 356, 368
EcoNI CCTNNNNNAGG 1 cut(s) 536
EcoO109I RGGNCCY 1 cut(s) 380
EcoO65I GGTNACC 2 cut(s) 356, 368
EcoRI GAATTC 1 cut(s) 589
EcoRII CCWGG 3 cut(s) 95, 232, 394
EcoT14I CCWWGG 1 cut(s) 69
EcoT38I GRGCYC 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 69
Esp3I CGTCTC 1 cut(s) 755
FaiI YATR 4 cut(s) 78, 509, 519, 545
FaqI GGGAC 2 cut(s) 428, 822
FauI CCCGC 3 cut(s) 214, 404, 790
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 5 cut(s) 226, 480, 659, 795, 844
FokI GGATG 2 cut(s) 112, 566
FriOI GRGCYC 1 cut(s) 430
Fsp4HI GCNGC 5 cut(s) 226, 480, 659, 795, 844
GlaI GCGC 3 cut(s) 344, 747, 824
GluI GCNGC 5 cut(s) 226, 480, 659, 795, 844
HaeII RGCGCY 1 cut(s) 826
HaeIII GGCC 5 cut(s) 213, 228, 318, 666, 801
HapII CCGG 4 cut(s) 210, 485, 730, 802
HgaI GACGC 1 cut(s) 737
HhaI GCGC 3 cut(s) 345, 748, 825
Hin6I GCGC 3 cut(s) 343, 746, 823
HinP1I GCGC 3 cut(s) 343, 746, 823
HinfI GANTC 2 cut(s) 31, 466
HpaII CCGG 4 cut(s) 210, 485, 730, 802
HphI GGTGA 6 cut(s) 52, 112, 344, 368, 413, 716
Hpy166II GTNNAC 1 cut(s) 392
Hpy188I TCNGA 3 cut(s) 169, 642, 835
Hpy188III TCNNGA 7 cut(s) 14, 142, 190, 470, 485, 680, 752
Hpy8I GTNNAC 1 cut(s) 392
Hpy99I CGWCG 2 cut(s) 26, 758
HpyAV CCTTC 6 cut(s) 100, 456, 538, 677, 677, 695
HpyCH4III ACNGT 4 cut(s) 362, 374, 611, 710
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 6 cut(s) 37, 55, 103, 258, 309, 479
HpyF10VI GCNNNNNNNGC 6 cut(s) 34, 202, 206, 234, 315, 324
HpyF3I CTNAG 1 cut(s) 201
HpySE526I ACGT 1 cut(s) 24
HspAI GCGC 3 cut(s) 343, 746, 823
Kpn2I TCCGGA 1 cut(s) 484
KpnI GGTACC 1 cut(s) 118
KroI GCCGGC 1 cut(s) 209
KroNI GCCGGC 1 cut(s) 211
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 4 cut(s) 18, 273, 634, 812
LmnI GCTCC 6 cut(s) 425, 487, 487, 830, 835, 840
Lsp1109I GCAGC 3 cut(s) 491, 645, 830
LweI GCATC 3 cut(s) 19, 42, 90
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 4 cut(s) 356, 368, 401, 704
MalI GATC 4 cut(s) 20, 275, 636, 814
MbiI CCGCTC 1 cut(s) 838
MboI GATC 4 cut(s) 18, 273, 634, 812
MboII GAAGA 4 cut(s) 629, 635, 655, 710
MfeI CAATTG 1 cut(s) 564
MhlI GDGCHC 3 cut(s) 180, 430, 616
MluCI AATT 6 cut(s) 283, 473, 564, 589, 618, 777
MmeI TCCRAC 1 cut(s) 813
MroI TCCGGA 1 cut(s) 484
MroNI GCCGGC 1 cut(s) 209
MseI TTAA 2 cut(s) 45, 312
MspI CCGG 4 cut(s) 210, 485, 730, 802
MspR9I CCNGG 4 cut(s) 97, 234, 396, 803
MunI CAATTG 1 cut(s) 564
MvaI CCWGG 3 cut(s) 97, 234, 396
MvnI CGCG 2 cut(s) 748, 794
MwoI GCNNNNNNNGC 6 cut(s) 34, 202, 206, 234, 315, 324
NaeI GCCGGC 1 cut(s) 211
NciI CCSGG 1 cut(s) 803
NdeII GATC 4 cut(s) 18, 273, 634, 812
NgoMIV GCCGGC 1 cut(s) 209
NlaIV GGNNCC 3 cut(s) 116, 427, 613
NmuCI GTSAC 3 cut(s) 356, 401, 704
NspV TTCGAA 1 cut(s) 593
PaqCI CACCTGC 1 cut(s) 28
PceI AGGCCT 1 cut(s) 666
PdiI GCCGGC 1 cut(s) 211
PfeI GAWTC 2 cut(s) 31, 466
PkrI GCNGC 5 cut(s) 227, 481, 660, 796, 845
PpuMI RGGWCCY 1 cut(s) 380
PshBI ATTAAT 1 cut(s) 312
Psp5II RGGWCCY 1 cut(s) 380
Psp6I CCWGG 3 cut(s) 95, 232, 394
PspEI GGTNACC 2 cut(s) 356, 368
PspGI CCWGG 3 cut(s) 95, 232, 394
PspN4I GGNNCC 3 cut(s) 116, 427, 613
PspPI GGNCC 6 cut(s) 227, 317, 380, 392, 721, 799
PspPPI RGGWCCY 1 cut(s) 380
PstI CTGCAG 1 cut(s) 39
RsaI GTAC 2 cut(s) 116, 774
RsaNI GTAC 2 cut(s) 115, 773
SaqAI TTAA 2 cut(s) 45, 312
SatI GCNGC 5 cut(s) 226, 480, 659, 795, 844
Sau3AI GATC 4 cut(s) 18, 273, 634, 812
Sau96I GGNCC 6 cut(s) 227, 317, 380, 392, 721, 799
ScrFI CCNGG 4 cut(s) 97, 234, 396, 803
SduI GDGCHC 3 cut(s) 180, 430, 616
SfaNI GCATC 3 cut(s) 19, 42, 90
SfcI CTRYAG 4 cut(s) 35, 439, 507, 533
SfuI TTCGAA 1 cut(s) 593
SinI GGWCC 3 cut(s) 380, 392, 721
SmlI CTYRAG 3 cut(s) 142, 188, 847
SmoI CTYRAG 3 cut(s) 142, 188, 847
Sse9I AATT 6 cut(s) 283, 473, 564, 589, 618, 777
SseBI AGGCCT 1 cut(s) 666
SsiI CCGC 7 cut(s) 207, 225, 241, 411, 794, 797, 838
StuI AGGCCT 1 cut(s) 666
StyD4I CCNGG 4 cut(s) 95, 232, 394, 801
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 4 cut(s) 362, 374, 611, 710
TaiI ACGT 1 cut(s) 27
TaqI TCGA 4 cut(s) 21, 464, 593, 753
TasI AATT 6 cut(s) 283, 473, 564, 589, 618, 777
TatI WGTACW 1 cut(s) 772
TauI GCSGC 2 cut(s) 228, 797
TfiI GAWTC 2 cut(s) 31, 466
Tru1I TTAA 2 cut(s) 45, 312
Tru9I TTAA 2 cut(s) 45, 312
TscAI CASTG 1 cut(s) 276
TseFI GTSAC 3 cut(s) 356, 401, 704
TseI GCWGC 3 cut(s) 479, 658, 843
Tsp45I GTSAC 3 cut(s) 356, 401, 704
TspRI CASTG 1 cut(s) 276
VpaK11BI GGWCC 3 cut(s) 380, 392, 721
VspI ATTAAT 1 cut(s) 312
XagI CCTNNNNNAGG 1 cut(s) 536
XapI RAATTY 3 cut(s) 283, 473, 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.