Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Forward (+)

13706711 .. 13708283

Gene Structure 1573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g15610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGATCATTTCAGAGAAGAACCGGCGCGAGATCTCCAAGTACCTCTTCCAAGAGGGAGTGTGCTATGCGAAGAAGGACTATAACATGCCTAAGCATCCGGAGATTGATGTGCCGAATCTGCAGGTGATTAAGCTGATGCAGAGCTTCAAGTCCAAAGAGTATGTCAGGGAGACTTTCGCGTGGATGCACTACTACTGGTATCTCACCAACGATGGCATTGAGTTCTTGAGGAACTACCTCAACCTCCCCTCCGAGATTGTGCCCAACACTCTCAAGAAACAGCCTAAGCCACCTGGCCGTCCTTTCGGCGGCCCACCCGGCGAACGCCCTCGTGGCCCACCCCGCTTTGGTGATGGAGAGCGCAGATTTGGAGGTGACCGTGATGGTTACCGTGGAGGTCCTCGTGGAGGTGACTTTGGTGGTGACAAGGAAGGAGCCCCTGCTGATTACAGACCTTCTTTCGGGGGTGCTCCCACAAGACCTGCCTTTGGTCGTGGTGCTGGTGGTTTTGGTGCCGGTCCAGCTAGCTCGAATCTATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0001763 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009653 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010252 GO:0010346 GO:0015935 GO:0016043 GO:0022603 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030312 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042592 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048367 GO:0048507 GO:0048532 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0051239 GO:0060688 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0090506 GO:0097159 GO:1900618 GO:1901363 GO:1905393 GO:1905428 GO:1990904 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

S10_plectin

Protein Analysis

181

Amino Acids

20.08

Weight (kDa)

9.59

Isoelectric Point (pI)

55.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S10_plectin	PF03501	3 - 94	1.9e-43	Plectin/S10 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	112
Acc36I	ACCTGC	2 cut(s)	112, 490
AccB1I	GGYRCC	1 cut(s)	512
AccII	CGCG	2 cut(s)	27, 179
AccIII	TCCGGA	1 cut(s)	97
AciI	CCGC	2 cut(s)	309, 343
AcoI	YGGCCR	1 cut(s)	295
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	5 cut(s)	308, 347, 407, 461, 488
AgsI	TTSAA	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	292
AjuI	GAANNNNNNNTTGG	2 cut(s)	29, 61
AluBI	AGCT	4 cut(s)	133, 144, 524, 528
AluI	AGCT	4 cut(s)	133, 144, 524, 528
Alw21I	GWGCWC	1 cut(s)	472
Alw26I	GTCTC	1 cut(s)	164
Aor13HI	TCCGGA	1 cut(s)	97
AoxI	GGCC	3 cut(s)	295, 310, 334
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AspLEI	GCGC	2 cut(s)	27, 363
AspS9I	GGNCC	4 cut(s)	311, 335, 398, 518
AsuC2I	CCSGG	1 cut(s)	318
AsuHPI	GGTGA	6 cut(s)	136, 196, 362, 386, 422, 434
AsuNHI	GCTAGC	1 cut(s)	524
AvaII	GGWCC	2 cut(s)	398, 518
BaeGI	GKGCMC	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	512
BanII	GRGCYC	1 cut(s)	439
BauI	CACGAG	2 cut(s)	330, 402
Bbv12I	GWGCWC	1 cut(s)	472
BccI	CCATC	3 cut(s)	206, 347, 377
BceAI	ACGGC	1 cut(s)	282
BciT130I	CCWGG	1 cut(s)	294
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	318
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	525
BfmI	CTRYAG	1 cut(s)	119
BfuAI	ACCTGC	2 cut(s)	112, 490
BglI	GCCNNNNNGGC	2 cut(s)	318, 333
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	1 cut(s)	310
BlsI	GCNGC	1 cut(s)	311
Bme1390I	CCNGG	2 cut(s)	294, 318
Bme18I	GGWCC	2 cut(s)	398, 518
BmgT120I	GGNCC	4 cut(s)	311, 335, 398, 518
BmiI	GGNNCC	2 cut(s)	436, 514
BmrFI	CCNGG	2 cut(s)	294, 318
BmsI	GCATC	3 cut(s)	103, 126, 174
BmtI	GCTAGC	1 cut(s)	528
Bpu10I	CCTNAGC	2 cut(s)	90, 285
BpuEI	CTTGAG	2 cut(s)	247, 257
BpuMI	CCSGG	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	391
BsaWI	WCCGGW	1 cut(s)	97
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	5 cut(s)	308, 347, 407, 461, 488
Bse118I	RCCGGY	2 cut(s)	21, 515
Bse1I	ACTGG	1 cut(s)	200
BseAI	TCCGGA	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	391
BseGI	GGATG	2 cut(s)	94, 189
BseLI	CCNNNNNNNGG	5 cut(s)	308, 347, 407, 461, 488
BseNI	ACTGG	1 cut(s)	200
BseSI	GKGCMC	1 cut(s)	264
Bsh1236I	CGCG	2 cut(s)	27, 179
BshFI	GGCC	3 cut(s)	297, 312, 336
BshNI	GGYRCC	1 cut(s)	512
BsiHKAI	GWGCWC	1 cut(s)	472
BsiSI	CCGG	4 cut(s)	22, 98, 318, 516
BslI	CCNNNNNNNGG	5 cut(s)	308, 347, 407, 461, 488
BsmAI	GTCTC	1 cut(s)	164
BsnI	GGCC	3 cut(s)	297, 312, 336
Bsp1286I	GDGCHC	3 cut(s)	264, 439, 472
Bsp13I	TCCGGA	1 cut(s)	97
Bsp143I	GATC	2 cut(s)	3, 30
BspACI	CCGC	2 cut(s)	309, 343
BspANI	GGCC	3 cut(s)	297, 312, 336
BspEI	TCCGGA	1 cut(s)	97
BspFNI	CGCG	2 cut(s)	27, 179
BspLI	GGNNCC	2 cut(s)	436, 514
BspMAI	CTGCAG	1 cut(s)	123
BspMI	ACCTGC	2 cut(s)	112, 490
BspOI	GCTAGC	1 cut(s)	528
BspT107I	GGYRCC	1 cut(s)	512
BsrFI	RCCGGY	2 cut(s)	21, 515
BsrI	ACTGG	1 cut(s)	200
BssAI	RCCGGY	2 cut(s)	21, 515
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	2 cut(s)	3, 30
BssSI	CACGAG	2 cut(s)	330, 402
Bst2BI	CACGAG	2 cut(s)	330, 402
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	2 cut(s)	380, 392
Bst6I	CTCTTC	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	526
BstDEI	CTNAG	2 cut(s)	90, 285
BstDSI	CCRYGG	1 cut(s)	391
BstEII	GGTNACC	2 cut(s)	374, 386
BstENI	CCTNNNNNAGG	1 cut(s)	405
BstF5I	GGATG	2 cut(s)	94, 189
BstFNI	CGCG	2 cut(s)	27, 179
BstHHI	GCGC	2 cut(s)	27, 363
BstKTI	GATC	2 cut(s)	6, 33
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	2 cut(s)	3, 30
BstMWI	GCNNNNNNNGC	5 cut(s)	118, 318, 333, 342, 521
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	1 cut(s)	88
BstPI	GGTNACC	2 cut(s)	374, 386
BstSCI	CCNGG	2 cut(s)	292, 316
BstSFI	CTRYAG	1 cut(s)	119
BstSLI	GKGCMC	1 cut(s)	264
BstUI	CGCG	2 cut(s)	27, 179
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BsuRI	GGCC	3 cut(s)	297, 312, 336
BtgI	CCRYGG	1 cut(s)	391
BtsCI	GGATG	2 cut(s)	94, 189
BveI	ACCTGC	2 cut(s)	112, 490
Cac8I	GCNNGC	1 cut(s)	526
CfoI	GCGC	2 cut(s)	27, 363
Cfr10I	RCCGGY	2 cut(s)	21, 515
Cfr13I	GGNCC	4 cut(s)	311, 335, 398, 518
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	1 cut(s)	85
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	2 cut(s)	90, 285
DpnI	GATC	2 cut(s)	5, 32
DpnII	GATC	2 cut(s)	3, 30
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco24I	GRGCYC	1 cut(s)	439
Eco47I	GGWCC	2 cut(s)	398, 518
Eco91I	GGTNACC	2 cut(s)	374, 386
EcoNI	CCTNNNNNAGG	1 cut(s)	405
EcoO109I	RGGNCCY	1 cut(s)	398
EcoO65I	GGTNACC	2 cut(s)	374, 386
EcoRII	CCWGG	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	439
FaeI	CATG	1 cut(s)	88
FaiI	YATR	4 cut(s)	66, 81, 86, 162
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FatI	CATG	1 cut(s)	84
FauI	CCCGC	1 cut(s)	350
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	310
FokI	GGATG	2 cut(s)	81, 196
FriOI	GRGCYC	1 cut(s)	439
Fsp4HI	GCNGC	1 cut(s)	310
FspBI	CTAG	1 cut(s)	525
GlaI	GCGC	2 cut(s)	26, 362
GluI	GCNGC	1 cut(s)	310
HaeIII	GGCC	3 cut(s)	297, 312, 336
HapII	CCGG	4 cut(s)	22, 98, 318, 516
HhaI	GCGC	2 cut(s)	27, 363
Hin1II	CATG	1 cut(s)	88
Hin6I	GCGC	2 cut(s)	25, 361
HinP1I	GCGC	2 cut(s)	25, 361
HinfI	GANTC	2 cut(s)	115, 532
HpaII	CCGG	4 cut(s)	22, 98, 318, 516
HphI	GGTGA	6 cut(s)	136, 196, 362, 386, 422, 434
Hpy188I	TCNGA	2 cut(s)	13, 253
Hpy188III	TCNNGA	3 cut(s)	98, 226, 274
HpyAV	CCTTC	3 cut(s)	67, 425, 465
HpyCH4III	ACNGT	2 cut(s)	380, 392
HpyCH4V	TGCA	3 cut(s)	121, 139, 187
HpyF10VI	GCNNNNNNNGC	5 cut(s)	118, 318, 333, 342, 521
HpyF3I	CTNAG	2 cut(s)	90, 285
Hsp92II	CATG	1 cut(s)	88
HspAI	GCGC	2 cut(s)	25, 361
Kpn2I	TCCGGA	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 30
LmnI	GCTCC	2 cut(s)	434, 475
LweI	GCATC	3 cut(s)	103, 126, 174
MaeI	CTAG	1 cut(s)	525
MaeIII	GTNAC	4 cut(s)	374, 386, 410, 422
MalI	GATC	2 cut(s)	5, 32
MboI	GATC	2 cut(s)	3, 30
MboII	GAAGA	3 cut(s)	28, 37, 82
MflI	RGATCY	1 cut(s)	30
MhlI	GDGCHC	3 cut(s)	264, 439, 472
MroI	TCCGGA	1 cut(s)	97
MseI	TTAA	2 cut(s)	129, 541
MspI	CCGG	4 cut(s)	22, 98, 318, 516
MspR9I	CCNGG	2 cut(s)	294, 318
MvaI	CCWGG	1 cut(s)	294
MvnI	CGCG	2 cut(s)	27, 179
MwoI	GCNNNNNNNGC	5 cut(s)	118, 318, 333, 342, 521
NciI	CCSGG	1 cut(s)	318
NdeII	GATC	2 cut(s)	3, 30
NheI	GCTAGC	1 cut(s)	524
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	2 cut(s)	436, 514
NmuCI	GTSAC	3 cut(s)	374, 410, 422
NspI	RCATGY	1 cut(s)	88
PaqCI	CACCTGC	1 cut(s)	112
PfeI	GAWTC	2 cut(s)	115, 532
PkrI	GCNGC	1 cut(s)	311
PpuMI	RGGWCCY	1 cut(s)	398
Psp5II	RGGWCCY	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	292
PspEI	GGTNACC	2 cut(s)	374, 386
PspGI	CCWGG	1 cut(s)	292
PspN4I	GGNNCC	2 cut(s)	436, 514
PspPI	GGNCC	4 cut(s)	311, 335, 398, 518
PspPPI	RGGWCCY	1 cut(s)	398
PstI	CTGCAG	1 cut(s)	123
PsuI	RGATCY	1 cut(s)	30
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SaqAI	TTAA	2 cut(s)	129, 541
SatI	GCNGC	1 cut(s)	310
Sau3AI	GATC	2 cut(s)	3, 30
Sau96I	GGNCC	4 cut(s)	311, 335, 398, 518
ScrFI	CCNGG	2 cut(s)	294, 318
SduI	GDGCHC	3 cut(s)	264, 439, 472
SfaNI	GCATC	3 cut(s)	103, 126, 174
SfcI	CTRYAG	1 cut(s)	119
SinI	GGWCC	2 cut(s)	398, 518
SmlI	CTYRAG	2 cut(s)	226, 272
SmoI	CTYRAG	2 cut(s)	226, 272
SsiI	CCGC	2 cut(s)	309, 343
SspMI	CTAG	1 cut(s)	525
StyD4I	CCNGG	2 cut(s)	292, 316
TaaI	ACNGT	2 cut(s)	380, 392
TaqI	TCGA	1 cut(s)	530
TauI	GCSGC	1 cut(s)	312
TfiI	GAWTC	2 cut(s)	115, 532
Tru1I	TTAA	2 cut(s)	129, 541
Tru9I	TTAA	2 cut(s)	129, 541
TseFI	GTSAC	3 cut(s)	374, 410, 422
Tsp45I	GTSAC	3 cut(s)	374, 410, 422
VpaK11BI	GGWCC	2 cut(s)	398, 518
XagI	CCTNNNNNAGG	1 cut(s)	405
XceI	RCATGY	1 cut(s)	88
XspI	CTAG	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.