Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Forward (+)

39602104 .. 39606760

Gene Structure 4657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G027020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGACCCAAATTCTATCTCGGAAAAGACAGATATGCAATGAGGGAGTGTGCTATGCGAAGAAGGACTACAACATGCCGAAGCATCCAGAGATCGACGTGCCGAATCTGCAGGAGTATGTGAGGGAGACCTTCGCCTGGATGCACTATTACTGGTACCTCACCAATGATGGCATTGAGTTCTTGAGGAACTACCTCAACCTGCCCTCGAGATTTGGCCCACCTCGCTTTGGTGATGGAGAGCGCAGATTTGGAGGTGACCGTGATGGTTACCGTGGAGGTCCTCGTGGTGGACCAGGAGGTGACTTTGGCAGGGACAAGGGAGGAGCCCCTGCTGACTACAGACCTTCTTTCGGGGTAATTTTTCTGTTGCTTAATCTTTTTCTGGTTTTGAATTTCTTGGTTACTGAATTTGGGGTTGGAGGATGGGATACCGTGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0001763 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009653 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010252 GO:0010346 GO:0015935 GO:0016043 GO:0022603 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030312 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042592 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048367 GO:0048507 GO:0048532 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0051239 GO:0060688 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0090506 GO:0097159 GO:1900618 GO:1901363 GO:1905393 GO:1905428 GO:1990904 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

S10_plectin

Protein Analysis

146

Amino Acids

16.8

Weight (kDa)

7.76

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S10_plectin	PF03501	9 - 73	1e-20	Plectin/S10 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	207
Acc65I	GGTACC	1 cut(s)	153
AccB1I	GGYRCC	1 cut(s)	153
AcsI	RAATTY	3 cut(s)	9, 391, 407
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	4 cut(s)	135, 227, 287, 350
AgsI	TTSAA	1 cut(s)	391
AjiI	CACGTC	1 cut(s)	97
AjnI	CCWGG	2 cut(s)	134, 292
AjuI	GAANNNNNNNTTGG	2 cut(s)	399, 431
Alw26I	GTCTC	1 cut(s)	119
Ama87I	CYCGRG	1 cut(s)	205
AoxI	GGCC	1 cut(s)	214
ApoI	RAATTY	3 cut(s)	9, 391, 407
Asp718I	GGTACC	1 cut(s)	153
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	3 cut(s)	215, 278, 290
AsuHPI	GGTGA	4 cut(s)	151, 242, 266, 311
AvaI	CYCGRG	1 cut(s)	205
AvaII	GGWCC	2 cut(s)	278, 290
BanI	GGYRCC	1 cut(s)	153
BanII	GRGCYC	1 cut(s)	328
BarI	GAAGNNNNNNTAC	2 cut(s)	50, 82
BauI	CACGAG	1 cut(s)	282
BccI	CCATC	4 cut(s)	161, 227, 257, 417
BciT130I	CCWGG	2 cut(s)	136, 294
BciVI	GTATCC	1 cut(s)	421
BcoDI	GTCTC	1 cut(s)	119
BfmI	CTRYAG	2 cut(s)	107, 337
BfuAI	ACCTGC	1 cut(s)	207
BfuI	GTATCC	1 cut(s)	421
Bme1390I	CCNGG	2 cut(s)	136, 294
Bme18I	GGWCC	2 cut(s)	278, 290
BmeT110I	CYCGRG	1 cut(s)	205
BmgBI	CACGTC	1 cut(s)	97
BmgT120I	GGNCC	3 cut(s)	215, 278, 290
BmiI	GGNNCC	2 cut(s)	155, 325
BmrFI	CCNGG	2 cut(s)	136, 294
BmsI	GCATC	2 cut(s)	91, 129
BpuEI	CTTGAG	1 cut(s)	202
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	4 cut(s)	135, 227, 287, 350
Bse1I	ACTGG	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	43
BseBI	CCWGG	2 cut(s)	136, 294
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	3 cut(s)	82, 144, 428
BseLI	CCNNNNNNNGG	4 cut(s)	135, 227, 287, 350
BseMI	GCAATG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	336
BshFI	GGCC	1 cut(s)	216
BshNI	GGYRCC	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	205
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	4 cut(s)	135, 227, 287, 350
BsmAI	GTCTC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	1 cut(s)	216
Bso31I	GGTCTC	1 cut(s)	119
BsoBI	CYCGRG	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp143I	GATC	1 cut(s)	90
BspANI	GGCC	1 cut(s)	216
BspLI	GGNNCC	2 cut(s)	155, 325
BspMAI	CTGCAG	1 cut(s)	111
BspMI	ACCTGC	1 cut(s)	207
BspT107I	GGYRCC	1 cut(s)	153
BspTNI	GGTCTC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	1 cut(s)	90
BssSI	CACGAG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	282
Bst2UI	CCWGG	2 cut(s)	136, 294
Bst4CI	ACNGT	3 cut(s)	260, 272, 433
BstDSI	CCRYGG	1 cut(s)	271
BstEII	GGTNACC	2 cut(s)	254, 266
BstF5I	GGATG	3 cut(s)	82, 144, 428
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	1 cut(s)	93
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	90
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 222
BstNI	CCWGG	2 cut(s)	136, 294
BstNSI	RCATGY	1 cut(s)	76
BstPI	GGTNACC	2 cut(s)	254, 266
BstSCI	CCNGG	2 cut(s)	134, 292
BstSFI	CTRYAG	2 cut(s)	107, 337
BsuI	GTATCC	1 cut(s)	421
BsuRI	GGCC	1 cut(s)	216
BtgI	CCRYGG	1 cut(s)	271
BtrI	CACGTC	1 cut(s)	97
BtsCI	GGATG	3 cut(s)	82, 144, 428
BveI	ACCTGC	1 cut(s)	207
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	3 cut(s)	215, 278, 290
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	2 cut(s)	216, 326
CviKI_1	RGCY	2 cut(s)	216, 326
CviQI	GTAC	1 cut(s)	154
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	328
Eco31I	GGTCTC	1 cut(s)	119
Eco47I	GGWCC	2 cut(s)	278, 290
Eco88I	CYCGRG	1 cut(s)	205
Eco91I	GGTNACC	2 cut(s)	254, 266
EcoO109I	RGGNCCY	1 cut(s)	278
EcoO65I	GGTNACC	2 cut(s)	254, 266
EcoRII	CCWGG	2 cut(s)	134, 292
EcoT38I	GRGCYC	1 cut(s)	328
FaeI	CATG	1 cut(s)	76
FaiI	YATR	4 cut(s)	34, 54, 74, 117
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	1 cut(s)	72
FokI	GGATG	3 cut(s)	69, 151, 435
FriOI	GRGCYC	1 cut(s)	328
GlaI	GCGC	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	216
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	1 cut(s)	76
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HinfI	GANTC	1 cut(s)	103
HphI	GGTGA	4 cut(s)	151, 242, 266, 311
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	3 cut(s)	86, 181, 207
Hpy8I	GTNNAC	1 cut(s)	290
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	3 cut(s)	55, 139, 354
HpyCH4III	ACNGT	3 cut(s)	260, 272, 433
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	3 cut(s)	36, 109, 142
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 222
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	76
HspAI	GCGC	1 cut(s)	241
KpnI	GGTACC	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	90
LmnI	GCTCC	1 cut(s)	323
LweI	GCATC	2 cut(s)	91, 129
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	4 cut(s)	254, 266, 299, 400
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MboII	GAAGA	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	328
MluCI	AATT	4 cut(s)	9, 357, 391, 407
MmeI	TCCRAC	1 cut(s)	397
MseI	TTAA	1 cut(s)	372
MspR9I	CCNGG	2 cut(s)	136, 294
MvaI	CCWGG	2 cut(s)	136, 294
MwoI	GCNNNNNNNGC	2 cut(s)	106, 222
NdeII	GATC	1 cut(s)	90
NlaIII	CATG	1 cut(s)	76
NlaIV	GGNNCC	2 cut(s)	155, 325
NmuCI	GTSAC	2 cut(s)	254, 299
NspI	RCATGY	1 cut(s)	76
PaeR7I	CTCGAG	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	103
PpuMI	RGGWCCY	1 cut(s)	278
Psp5II	RGGWCCY	1 cut(s)	278
Psp6I	CCWGG	2 cut(s)	134, 292
PspEI	GGTNACC	2 cut(s)	254, 266
PspGI	CCWGG	2 cut(s)	134, 292
PspN4I	GGNNCC	2 cut(s)	155, 325
PspPI	GGNCC	3 cut(s)	215, 278, 290
PspPPI	RGGWCCY	1 cut(s)	278
PstI	CTGCAG	1 cut(s)	111
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	372
Sau3AI	GATC	1 cut(s)	90
Sau96I	GGNCC	3 cut(s)	215, 278, 290
ScrFI	CCNGG	2 cut(s)	136, 294
SduI	GDGCHC	1 cut(s)	328
SfaNI	GCATC	2 cut(s)	91, 129
SfcI	CTRYAG	2 cut(s)	107, 337
Sfr274I	CTCGAG	1 cut(s)	205
SinI	GGWCC	2 cut(s)	278, 290
SlaI	CTCGAG	1 cut(s)	205
SmlI	CTYRAG	2 cut(s)	181, 205
SmoI	CTYRAG	2 cut(s)	181, 205
Sse9I	AATT	4 cut(s)	9, 357, 391, 407
StyD4I	CCNGG	2 cut(s)	134, 292
TaaI	ACNGT	3 cut(s)	260, 272, 433
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	2 cut(s)	93, 206
TasI	AATT	4 cut(s)	9, 357, 391, 407
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TseFI	GTSAC	2 cut(s)	254, 299
Tsp45I	GTSAC	2 cut(s)	254, 299
VpaK11BI	GGWCC	2 cut(s)	278, 290
XapI	RAATTY	3 cut(s)	9, 391, 407
XceI	RCATGY	1 cut(s)	76
XhoI	CTCGAG	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.