Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001582

Physical Location & Seq

Genomic Coordinates Forward (+)

7597421 .. 7598863

Gene Structure 1443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g07440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGATCATTTCTGAGAAGAATCGTCGGTTTGTAGAGATCTCCAAGTACCTGTTCCAAGAGGGAGTTTGCTACGCGAAGAAGGACTATAACTTGGCGAAGCATCCCGACATCGACGTCCCAAATCTGCAGGTGATTAAGCTGATGCAGAGCTTCAAGTCCAAGGAGTATGTGAGGGAGACGTTTGCTTGGATGCACTACTACTGGTACCTTACCAATGACGGTATCGAGTTCTTGAGGACTTATCTCAATCTCCCTTCTGAGATTGTCCCTGCTACTCTCAAGAAGCAGGCCAAGCCTCCTGGCCGCCCCATGGGCCCCTCCGGTGACCGCCCCCGTGGTCCGTCTCGCTTTGATGGAGAACGTAGATTCGGTGGTGACAGGGATGGGTACCGTGGAGGACCTCGTGCACCTGGGGGTGACTTTGGAGACAAGGGTGGAGCTCCTGCTGATTATAGACCTTCTTTTGGGGGTCCCGGTGGAAGGCCTGGCTTTGGTCGCGGAGCTGGTGGTTTTGGTGCAGGCCCAGCTAGCTCTAATCAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0001763 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006996 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009653 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010252 GO:0010346 GO:0015935 GO:0016043 GO:0022603 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030312 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042592 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048367 GO:0048507 GO:0048532 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0051239 GO:0060688 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0090506 GO:0097159 GO:1900618 GO:1901363 GO:1905393 GO:1905428 GO:1990904 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

S10_plectin

Protein Analysis

182

Amino Acids

20.0

Weight (kDa)

9.68

Isoelectric Point (pI)

52.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S10_plectin	PF03501	11 - 96	8.8e-41	Plectin/S10 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001582)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25740 AT4G25740 AT5G41520 AT5G41520 AT5G52650
fragaria_vesca	FvH4_2g15610 FvH4_5g03060
malus_domestica	MD00G1171100.v1.1 MD06G1089600.v1.1 MD14G1084900.v1.1 MD14G1110700.v1.1
prunus_persica	Prupe.1G534700_v2.0.a1 Prupe.1G534800_v2.0.a1 Prupe.1G534900_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G037600_v2.0.a1 Prupe.2G157900_v2.0.a1
pyrus_communis	pycom06g08550 pycom12g07790 pycom14g07440 pycom14g10540
rosa_chinensis	RchiOBHm_Chr1g0361491 RchiOBHm_Chr7g0196731
rosa_laevigata	RLG00000003994 RLG00000014881
rosa_multiflora	Rmu_sc0000718.1_g000036 Rmu_sc0005166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259000 Rroxscaffold_4G00294970
rosa_rugosa	Rorug07G0036000
rosa_samantha	Rh1BG263700 Rh1CG281500 Rh1DG293800 Rh2DG673000 Rh4DG311100 Rh5AG176200 Rh5BG516800 Rh5DG147900 Rh6AG203000 Rh6AG396400 Rh7AG159800 Rh7BG162000 Rh7CG168400 Rh7DG075600 Rh7DG161100
rosa_wichuraiana	Rw0G004470 Rw1G035730 Rw5G017400 Rw5G027020 Rw7G013970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	118
AasI	GACNNNNNNGTC	1 cut(s)	113
AatII	GACGTC	1 cut(s)	117
Acc36I	ACCTGC	1 cut(s)	118
Acc65I	GGTACC	2 cut(s)	204, 387
AccB1I	GGYRCC	2 cut(s)	204, 387
AccII	CGCG	2 cut(s)	74, 498
AciI	CCGC	3 cut(s)	304, 328, 498
AcoI	YGGCCR	1 cut(s)	301
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	3 cut(s)	47, 206, 389
AfiI	CCNNNNNNNGG	4 cut(s)	310, 464, 480, 491
AgsI	TTSAA	1 cut(s)	154
AjnI	CCWGG	3 cut(s)	298, 409, 484
AjuI	GAANNNNNNNTTGG	2 cut(s)	35, 67
AluBI	AGCT	6 cut(s)	139, 150, 440, 503, 527, 531
AluI	AGCT	6 cut(s)	139, 150, 440, 503, 527, 531
Alw21I	GWGCWC	2 cut(s)	409, 442
Alw26I	GTCTC	3 cut(s)	170, 348, 420
Alw44I	GTGCAC	1 cut(s)	405
AoxI	GGCC	5 cut(s)	288, 301, 313, 482, 520
ApaI	GGGCCC	1 cut(s)	317
ApaLI	GTGCAC	1 cut(s)	405
Asp718I	GGTACC	2 cut(s)	204, 387
AspS9I	GGNCC	6 cut(s)	313, 314, 338, 398, 470, 521
AsuC2I	CCSGG	1 cut(s)	474
AsuHPI	GGTGA	4 cut(s)	142, 335, 386, 428
AsuNHI	GCTAGC	1 cut(s)	527
AvaII	GGWCC	3 cut(s)	338, 398, 470
BaeGI	GKGCMC	2 cut(s)	317, 409
BanI	GGYRCC	2 cut(s)	204, 387
BanII	GRGCYC	2 cut(s)	317, 442
BauI	CACGAG	1 cut(s)	402
Bbv12I	GWGCWC	2 cut(s)	409, 442
BccI	CCATC	2 cut(s)	347, 377
BciT130I	CCWGG	3 cut(s)	300, 411, 486
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	474
BcoDI	GTCTC	3 cut(s)	170, 348, 420
BfaI	CTAG	1 cut(s)	528
BfmI	CTRYAG	1 cut(s)	125
BfuAI	ACCTGC	1 cut(s)	118
BglI	GCCNNNNNGGC	1 cut(s)	312
BglII	AGATCT	1 cut(s)	36
BisI	GCNGC	1 cut(s)	304
BlsI	GCNGC	1 cut(s)	305
Bme1390I	CCNGG	4 cut(s)	300, 411, 474, 486
Bme18I	GGWCC	3 cut(s)	338, 398, 470
BmgT120I	GGNCC	6 cut(s)	313, 314, 338, 398, 470, 521
BmiI	GGNNCC	6 cut(s)	206, 315, 316, 389, 471, 472
BmrFI	CCNGG	4 cut(s)	300, 411, 474, 486
BmsI	GCATC	3 cut(s)	109, 132, 180
BmtI	GCTAGC	1 cut(s)	531
BpuEI	CTTGAG	2 cut(s)	253, 263
BpuMI	CCSGG	1 cut(s)	474
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	5 cut(s)	159, 309, 334, 391, 410
BsaWI	WCCGGW	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	4 cut(s)	310, 464, 480, 491
Bse1I	ACTGG	1 cut(s)	206
BseBI	CCWGG	3 cut(s)	300, 411, 486
BseDI	CCNNGG	5 cut(s)	159, 309, 334, 391, 410
BseGI	GGATG	3 cut(s)	100, 195, 388
BseLI	CCNNNNNNNGG	4 cut(s)	310, 464, 480, 491
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	206
BseSI	GKGCMC	2 cut(s)	317, 409
BseYI	CCCAGC	1 cut(s)	523
BsgI	GTGCAG	1 cut(s)	537
Bsh1236I	CGCG	2 cut(s)	74, 498
BshFI	GGCC	5 cut(s)	290, 303, 315, 484, 522
BshNI	GGYRCC	2 cut(s)	204, 387
BsiHKAI	GWGCWC	2 cut(s)	409, 442
BsiSI	CCGG	2 cut(s)	321, 474
BslFI	GGGAC	3 cut(s)	101, 251, 456
BslI	CCNNNNNNNGG	4 cut(s)	310, 464, 480, 491
BsmAI	GTCTC	3 cut(s)	170, 348, 420
BsmBI	CGTCTC	2 cut(s)	170, 348
BsmFI	GGGAC	3 cut(s)	101, 251, 456
BsnI	GGCC	5 cut(s)	290, 303, 315, 484, 522
Bsp120I	GGGCCC	1 cut(s)	313
Bsp1286I	GDGCHC	3 cut(s)	317, 409, 442
Bsp143I	GATC	2 cut(s)	3, 36
Bsp19I	CCATGG	1 cut(s)	309
BspACI	CCGC	3 cut(s)	304, 328, 498
BspANI	GGCC	5 cut(s)	290, 303, 315, 484, 522
BspCNI	CTCAG	2 cut(s)	4, 250
BspFNI	CGCG	2 cut(s)	74, 498
BspLI	GGNNCC	6 cut(s)	206, 315, 316, 389, 471, 472
BspMAI	CTGCAG	1 cut(s)	129
BspMI	ACCTGC	1 cut(s)	118
BspOI	GCTAGC	1 cut(s)	531
BspT107I	GGYRCC	2 cut(s)	204, 387
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	5 cut(s)	159, 309, 334, 391, 410
BssMI	GATC	2 cut(s)	3, 36
BssNI	GRCGYC	1 cut(s)	114
BssSI	CACGAG	1 cut(s)	402
BssT1I	CCWWGG	2 cut(s)	159, 309
Bst2BI	CACGAG	1 cut(s)	402
Bst2UI	CCWGG	3 cut(s)	300, 411, 486
Bst4CI	ACNGT	2 cut(s)	221, 392
BstACI	GRCGYC	1 cut(s)	114
BstC8I	GCNNGC	3 cut(s)	288, 520, 529
BstDEI	CTNAG	2 cut(s)	12, 258
BstDSI	CCRYGG	3 cut(s)	309, 334, 391
BstEII	GGTNACC	1 cut(s)	323
BstF5I	GGATG	3 cut(s)	100, 195, 388
BstFNI	CGCG	2 cut(s)	74, 498
BstKTI	GATC	2 cut(s)	6, 39
BstMAI	GTCTC	3 cut(s)	170, 348, 420
BstMBI	GATC	2 cut(s)	3, 36
BstMWI	GCNNNNNNNGC	5 cut(s)	292, 312, 495, 524, 528
BstNI	CCWGG	3 cut(s)	300, 411, 486
BstPI	GGTNACC	1 cut(s)	323
BstSCI	CCNGG	4 cut(s)	298, 409, 472, 484
BstSFI	CTRYAG	1 cut(s)	125
BstSLI	GKGCMC	2 cut(s)	317, 409
BstUI	CGCG	2 cut(s)	74, 498
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
BsuRI	GGCC	5 cut(s)	290, 303, 315, 484, 522
BtgI	CCRYGG	3 cut(s)	309, 334, 391
BtsCI	GGATG	3 cut(s)	100, 195, 388
BveI	ACCTGC	1 cut(s)	118
Cac8I	GCNNGC	3 cut(s)	288, 520, 529
Cfr13I	GGNCC	6 cut(s)	313, 314, 338, 398, 470, 521
Csp6I	GTAC	3 cut(s)	46, 205, 388
CviAII	CATG	1 cut(s)	310
CviQI	GTAC	3 cut(s)	46, 205, 388
DdeI	CTNAG	2 cut(s)	12, 258
DpnI	GATC	2 cut(s)	5, 38
DpnII	GATC	2 cut(s)	3, 36
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
EaeI	YGGCCR	1 cut(s)	301
Ecl136II	GAGCTC	1 cut(s)	440
Eco130I	CCWWGG	2 cut(s)	159, 309
Eco147I	AGGCCT	1 cut(s)	484
Eco24I	GRGCYC	2 cut(s)	317, 442
Eco47I	GGWCC	3 cut(s)	338, 398, 470
Eco53kI	GAGCTC	1 cut(s)	440
Eco91I	GGTNACC	1 cut(s)	323
EcoICRI	GAGCTC	1 cut(s)	440
EcoO109I	RGGNCCY	3 cut(s)	314, 398, 470
EcoO65I	GGTNACC	1 cut(s)	323
EcoRII	CCWGG	3 cut(s)	298, 409, 484
EcoT14I	CCWWGG	2 cut(s)	159, 309
EcoT38I	GRGCYC	2 cut(s)	317, 442
ErhI	CCWWGG	2 cut(s)	159, 309
Esp3I	CGTCTC	2 cut(s)	170, 348
FaeI	CATG	1 cut(s)	313
FaiI	YATR	4 cut(s)	87, 168, 311, 453
FaqI	GGGAC	3 cut(s)	101, 251, 456
FatI	CATG	1 cut(s)	309
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	304
FokI	GGATG	3 cut(s)	87, 202, 395
FriOI	GRGCYC	2 cut(s)	317, 442
Fsp4HI	GCNGC	1 cut(s)	304
FspBI	CTAG	1 cut(s)	528
GluI	GCNGC	1 cut(s)	304
GsaI	CCCAGC	1 cut(s)	527
HaeIII	GGCC	5 cut(s)	290, 303, 315, 484, 522
HapII	CCGG	2 cut(s)	321, 474
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	313
HinfI	GANTC	2 cut(s)	19, 366
HpaII	CCGG	2 cut(s)	321, 474
HphI	GGTGA	4 cut(s)	142, 335, 386, 428
Hpy166II	GTNNAC	1 cut(s)	407
Hpy188I	TCNGA	2 cut(s)	13, 259
Hpy188III	TCNNGA	3 cut(s)	104, 232, 280
Hpy8I	GTNNAC	1 cut(s)	407
Hpy99I	CGWCG	2 cut(s)	27, 116
HpyAV	CCTTC	4 cut(s)	73, 264, 468, 474
HpyCH4III	ACNGT	2 cut(s)	221, 392
HpyCH4IV	ACGT	3 cut(s)	114, 179, 361
HpyCH4V	TGCA	5 cut(s)	127, 145, 193, 407, 518
HpyF10VI	GCNNNNNNNGC	5 cut(s)	292, 312, 495, 524, 528
HpyF3I	CTNAG	2 cut(s)	12, 258
HpySE526I	ACGT	3 cut(s)	114, 179, 361
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	313
KflI	GGGWCCC	1 cut(s)	470
KpnI	GGTACC	2 cut(s)	208, 391
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 36
LmnI	GCTCC	3 cut(s)	437, 445, 500
LweI	GCATC	3 cut(s)	109, 132, 180
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	3 cut(s)	114, 179, 361
MaeIII	GTNAC	3 cut(s)	323, 374, 416
MalI	GATC	2 cut(s)	5, 38
MboI	GATC	2 cut(s)	3, 36
MboII	GAAGA	2 cut(s)	28, 88
MflI	RGATCY	1 cut(s)	36
MhlI	GDGCHC	3 cut(s)	317, 409, 442
MnlI	CCTC	7 cut(s)	52, 165, 228, 306, 328, 389, 411
MseI	TTAA	2 cut(s)	135, 544
MspI	CCGG	2 cut(s)	321, 474
MspR9I	CCNGG	4 cut(s)	300, 411, 474, 486
MvaI	CCWGG	3 cut(s)	300, 411, 486
MvnI	CGCG	2 cut(s)	74, 498
MwoI	GCNNNNNNNGC	5 cut(s)	292, 312, 495, 524, 528
NciI	CCSGG	1 cut(s)	474
NcoI	CCATGG	1 cut(s)	309
NdeII	GATC	2 cut(s)	3, 36
NheI	GCTAGC	1 cut(s)	527
NlaIII	CATG	1 cut(s)	313
NlaIV	GGNNCC	6 cut(s)	206, 315, 316, 389, 471, 472
NmuCI	GTSAC	3 cut(s)	323, 374, 416
PaqCI	CACCTGC	1 cut(s)	118
PceI	AGGCCT	1 cut(s)	484
PfeI	GAWTC	2 cut(s)	19, 366
PkrI	GCNGC	1 cut(s)	305
PpuMI	RGGWCCY	2 cut(s)	398, 470
Psp124BI	GAGCTC	1 cut(s)	442
Psp5II	RGGWCCY	2 cut(s)	398, 470
Psp6I	CCWGG	3 cut(s)	298, 409, 484
PspEI	GGTNACC	1 cut(s)	323
PspFI	CCCAGC	1 cut(s)	523
PspGI	CCWGG	3 cut(s)	298, 409, 484
PspN4I	GGNNCC	6 cut(s)	206, 315, 316, 389, 471, 472
PspOMI	GGGCCC	1 cut(s)	313
PspPI	GGNCC	6 cut(s)	313, 314, 338, 398, 470, 521
PspPPI	RGGWCCY	2 cut(s)	398, 470
PstI	CTGCAG	1 cut(s)	129
PsuI	RGATCY	1 cut(s)	36
RsaI	GTAC	3 cut(s)	47, 206, 389
RsaNI	GTAC	3 cut(s)	46, 205, 388
SacI	GAGCTC	1 cut(s)	442
SaqAI	TTAA	2 cut(s)	135, 544
SatI	GCNGC	1 cut(s)	304
Sau3AI	GATC	2 cut(s)	3, 36
Sau96I	GGNCC	6 cut(s)	313, 314, 338, 398, 470, 521
ScrFI	CCNGG	4 cut(s)	300, 411, 474, 486
SduI	GDGCHC	3 cut(s)	317, 409, 442
SfaNI	GCATC	3 cut(s)	109, 132, 180
SfcI	CTRYAG	1 cut(s)	125
SinI	GGWCC	3 cut(s)	338, 398, 470
SmlI	CTYRAG	2 cut(s)	232, 278
SmoI	CTYRAG	2 cut(s)	232, 278
SseBI	AGGCCT	1 cut(s)	484
SsiI	CCGC	3 cut(s)	304, 328, 498
SspMI	CTAG	1 cut(s)	528
SstI	GAGCTC	1 cut(s)	442
StuI	AGGCCT	1 cut(s)	484
StyD4I	CCNGG	4 cut(s)	298, 409, 472, 484
StyI	CCWWGG	2 cut(s)	159, 309
TaaI	ACNGT	2 cut(s)	221, 392
TaiI	ACGT	3 cut(s)	117, 182, 364
TaqI	TCGA	2 cut(s)	111, 225
TauI	GCSGC	1 cut(s)	306
TfiI	GAWTC	2 cut(s)	19, 366
Tru1I	TTAA	2 cut(s)	135, 544
Tru9I	TTAA	2 cut(s)	135, 544
TseFI	GTSAC	3 cut(s)	323, 374, 416
Tsp45I	GTSAC	3 cut(s)	323, 374, 416
TspGWI	ACGGA	1 cut(s)	330
VneI	GTGCAC	1 cut(s)	405
VpaK11BI	GGWCC	3 cut(s)	338, 398, 470
XspI	CTAG	1 cut(s)	528
ZraI	GACGTC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.