Rorug07G0036000
MYB Family

Short-chain dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000238
Physical Location & Seq
Reverse (-)
2539934 .. 2542529
2596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0036000.1

Sequence Viewer

Length: 576 bp
ATGGTGTTGGTTTTGGCCTTGGGGGATTTGCACATACCCCACAGGGCACCTGATCTACCTGCGAAGTTCAAGTCCATGCTTGTTCCTGGCAAGATCCAGCATATAATTTGCACCGGGAATCTTTGTATCAAAGAAGTTCACGACTACTTGAAGACTCTTTGTCCCGACTTGCATATCGCTCGAGGTGAGTATGACGAAGAGACACGATATCCAGAGACCAAAACACTGACTATTGGTCAATTTAAGTTGGGACTATGCCATGGCCATCAGGTTATTCCATGGGGGGACCTAGACTCGCTAGCCATGCTTCAAAGGCAGTTGGATGTAGATATCCTTGTCACAGGTCACACCCATCAGTTCACAGCCTACAAGCATGAAGGGGGTGTTGTTATAAACCCCGGGTCTGCCAGTGGCGCCTATAGCAGCATCACCTATGATGTCAACCCAAGCTTTGTCCTCATGGACATTGATGGCCTTCGTGTGGTTGTGTATGTATATGAGCTCATTGATGGGGAGGTTAAGGTTGACAAGATTGATTTCAAGAAGACTACTGCCGCTACTCACTCCGCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
adh_short

Protein Analysis

191

Amino Acids

21.19

Weight (kDa)

6.02

Isoelectric Point (pI)

21.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos_2 PF12850 4 - 157 2.9e-22 Calcineurin-like phosphoesterase superfamily domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000238)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G11410 AT4G11410 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23420 AT4G23430 AT4G23430 AT4G23430 AT4G23430
fragaria_vesca FvH4_4g28972 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02640 FvH4_5g02641 FvH4_5g02642 FvH4_5g02643 FvH4_5g02644 FvH4_7g29900 FvH4_7g29900 FvH4_7g29900
malus_domestica MD00G1173300.v1.1 MD01G1205400.v1.1 MD06G1085800.v1.1 MD07G1274000.v1.1 MD07G1274200.v1.1 MD07G1274300.v1.1 MD07G1274400.v1.1 MD07G1274500.v1.1 MD07G1274700.v1.1 MD07G1274800.v1.1 MD14G1106700.v1.1 MD14G1106800.v1.1
prunus_persica Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.2G298000_v2.0.a1 Prupe.5G101600_v2.0.a1 Prupe.5G101900_v2.0.a1 Prupe.5G102000_v2.0.a1
pyrus_communis pycom01g21490 pycom06g08190 pycom06g08200 pycom07g25040 pycom07g25050 pycom07g25060 pycom07g25070 pycom07g25090
rosa_chinensis RchiOBHm_Chr1g0377861 RchiOBHm_Chr1g0377871 RchiOBHm_Chr7g0196741 RchiOBHm_Chr7g0197221 RchiOBHm_Chr7g0197291 RchiOBHm_Chr7g0197361 RchiOBHm_Chr7g0197421 RchiOBHm_Chr7g0197431 RchiOBHm_Chr7g0197441 RchiOBHm_Chr7g0197571
rosa_laevigata RLG00000003940 RLG00000003941 RLG00000003943 RLG00000003949 RLG00000003993 RLG00000026490 RLG00000026491
rosa_multiflora Rmu_co8456741.1_g000001 Rmu_sc0001083.1_g000032 Rmu_sc0001164.1_g000006 Rmu_sc0003263.1_g000014 Rmu_sc0004824.1_g000009 Rmu_sc0005659.1_g000027 Rmu_sc0010019.1_g000002 Rmu_sc0012104.1_g000004 Rmu_sc0013422.1_g000001 Rmu_sc0017623.1_g000003 Rmu_sc0018035.1_g000001
rosa_roxburghii Rroxscaffold_3G00258340 Rroxscaffold_3G00258480 Rroxscaffold_3G00258490 Rroxscaffold_3G00258990 Rroxscaffold_4G00280990
rosa_rugosa Rorug01G0405400 Rorug07G0036000 Rorug07G0036100 Rorug07G0038800 Rorug07G0038900 Rorug07G0039300 Rorug07G0039400 Rorug07G0039500 Rorug07G0039500 Rorug07G0041500 Rorug07G0041600 Rorug07G0041600
rosa_samantha Rh1BG382700 Rh1BG382800 Rh1CG396600 Rh1DG413700 Rh1DG413800 Rh2AG350300 Rh2DG223200 Rh2DG543200 Rh7AG159900 Rh7AG163400 Rh7AG163500 Rh7AG164300 Rh7AG164600 Rh7AG164700 Rh7AG165900 Rh7BG162100 Rh7BG165400 Rh7BG166100 Rh7BG166600 Rh7BG166700 Rh7BG166800 Rh7BG166900 Rh7BG167900 Rh7DG161200 Rh7DG164800 Rh7DG165500 Rh7DG165900 Rh7DG166000 Rh7DG166100
rosa_wichuraiana Rw1G037190 Rw1G037200 Rw2G016470 Rw2G028400 Rw7G013980 Rw7G014270 Rw7G014330 Rw7G014340 Rw7G014350 Rw7G014360 Rw7G014450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 392
Acc36I ACCTGC 1 cut(s) 67
AccB1I GGYRCC 2 cut(s) 46, 413
AccBSI CCGCTC 1 cut(s) 569
AciI CCGC 2 cut(s) 555, 567
AclWI GGATC 1 cut(s) 88
AcoI YGGCCR 1 cut(s) 262
AcyI GRCGYC 1 cut(s) 414
AfiI CCNNNNNNNGG 1 cut(s) 481
AgsI TTSAA 4 cut(s) 70, 151, 311, 541
AhdI GACNNNNNGTC 2 cut(s) 159, 234
AjnI CCWGG 1 cut(s) 85
AluBI AGCT 2 cut(s) 450, 502
AluI AGCT 2 cut(s) 450, 502
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 2 cut(s) 194, 209
AlwI GGATC 1 cut(s) 88
Ama87I CYCGRG 2 cut(s) 180, 398
AoxI GGCC 3 cut(s) 15, 262, 472
ApeKI GCWGC 1 cut(s) 423
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
AspLEI GCGC 1 cut(s) 416
AspS9I GGNCC 1 cut(s) 286
AsuC2I CCSGG 3 cut(s) 115, 399, 400
AsuHPI GGTGA 2 cut(s) 197, 421
AsuNHI GCTAGC 1 cut(s) 298
AvaI CYCGRG 2 cut(s) 180, 398
AvaII GGWCC 1 cut(s) 286
BaeGI GKGCMC 1 cut(s) 49
BalI TGGCCA 1 cut(s) 264
BanI GGYRCC 2 cut(s) 46, 413
BanII GRGCYC 1 cut(s) 504
BbsI GAAGAC 2 cut(s) 158, 551
Bbv12I GWGCWC 1 cut(s) 504
BbvI GCAGC 1 cut(s) 435
BccI CCATC 4 cut(s) 273, 360, 464, 503
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BciT130I CCWGG 1 cut(s) 87
BcnI CCSGG 3 cut(s) 115, 399, 400
BcoDI GTCTC 2 cut(s) 194, 209
BfaI CTAG 2 cut(s) 290, 299
BfmI CTRYAG 1 cut(s) 418
BfoI RGCGCY 1 cut(s) 417
BfuAI ACCTGC 1 cut(s) 67
BisI GCNGC 2 cut(s) 424, 555
BlsI GCNGC 2 cut(s) 425, 556
Bme1390I CCNGG 4 cut(s) 87, 115, 399, 400
Bme18I GGWCC 1 cut(s) 286
BmeRI GACNNNNNGTC 2 cut(s) 159, 234
BmeT110I CYCGRG 2 cut(s) 180, 398
BmgT120I GGNCC 1 cut(s) 286
BmiI GGNNCC 3 cut(s) 48, 287, 415
BmrFI CCNGG 4 cut(s) 87, 115, 399, 400
BmsI GCATC 1 cut(s) 435
BmtI GCTAGC 1 cut(s) 302
BpiI GAAGAC 2 cut(s) 158, 551
BpuMI CCSGG 3 cut(s) 115, 399, 400
BsaHI GRCGYC 1 cut(s) 414
BsaI GGTCTC 1 cut(s) 209
BsaJI CCNNGG 5 cut(s) 18, 259, 278, 397, 398
Bsc4I CCNNNNNNNGG 1 cut(s) 481
Bse1I ACTGG 1 cut(s) 408
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 5 cut(s) 18, 259, 278, 397, 398
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 481
BseNI ACTGG 1 cut(s) 408
BseSI GKGCMC 1 cut(s) 49
BseXI GCAGC 1 cut(s) 435
BshFI GGCC 3 cut(s) 17, 264, 474
BshNI GGYRCC 2 cut(s) 46, 413
BsiHKAI GWGCWC 1 cut(s) 504
BsiHKCI CYCGRG 2 cut(s) 180, 398
BsiSI CCGG 2 cut(s) 114, 399
BslFI GGGAC 3 cut(s) 147, 264, 299
BslI CCNNNNNNNGG 1 cut(s) 481
BsmAI GTCTC 2 cut(s) 194, 209
BsmFI GGGAC 3 cut(s) 147, 264, 299
BsnI GGCC 3 cut(s) 17, 264, 474
Bso31I GGTCTC 1 cut(s) 209
BsoBI CYCGRG 2 cut(s) 180, 398
Bsp1286I GDGCHC 2 cut(s) 49, 504
Bsp143I GATC 2 cut(s) 52, 93
Bsp19I CCATGG 2 cut(s) 259, 278
BspACI CCGC 2 cut(s) 555, 567
BspANI GGCC 3 cut(s) 17, 264, 474
BspLI GGNNCC 3 cut(s) 48, 287, 415
BspMI ACCTGC 1 cut(s) 67
BspOI GCTAGC 1 cut(s) 302
BspPI GGATC 1 cut(s) 88
BspT107I GGYRCC 2 cut(s) 46, 413
BspTNI GGTCTC 1 cut(s) 209
BsrBI CCGCTC 1 cut(s) 569
BsrI ACTGG 1 cut(s) 408
BssECI CCNNGG 5 cut(s) 18, 259, 278, 397, 398
BssMI GATC 2 cut(s) 52, 93
BssNI GRCGYC 1 cut(s) 414
BssT1I CCWWGG 3 cut(s) 18, 259, 278
Bst2UI CCWGG 1 cut(s) 87
Bst6I CTCTTC 1 cut(s) 192
BstACI GRCGYC 1 cut(s) 414
BstC8I GCNNGC 1 cut(s) 300
BstDSI CCRYGG 2 cut(s) 259, 278
BstF5I GGATG 1 cut(s) 328
BstH2I RGCGCY 1 cut(s) 417
BstHHI GCGC 1 cut(s) 416
BstKTI GATC 2 cut(s) 55, 96
BstMAI GTCTC 2 cut(s) 194, 209
BstMBI GATC 2 cut(s) 52, 93
BstMWI GCNNNNNNNGC 4 cut(s) 304, 313, 413, 420
BstNI CCWGG 1 cut(s) 87
BstSCI CCNGG 4 cut(s) 85, 113, 397, 398
BstSFI CTRYAG 1 cut(s) 418
BstSLI GKGCMC 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 435
BstV2I GAAGAC 2 cut(s) 158, 551
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BsuRI GGCC 3 cut(s) 17, 264, 474
BtgI CCRYGG 2 cut(s) 259, 278
BtsCI GGATG 1 cut(s) 328
BtsIMutI CAGTG 2 cut(s) 224, 415
BveI ACCTGC 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 300
CfoI GCGC 1 cut(s) 416
Cfr13I GGNCC 1 cut(s) 286
Cfr9I CCCGGG 1 cut(s) 398
CviAII CATG 6 cut(s) 76, 260, 279, 304, 374, 460
CviJI RGCY 7 cut(s) 17, 264, 302, 365, 450, 474, 502
CviKI_1 RGCY 7 cut(s) 17, 264, 302, 365, 450, 474, 502
DinI GGCGCC 1 cut(s) 415
DpnI GATC 2 cut(s) 54, 95
DpnII GATC 2 cut(s) 52, 93
DriI GACNNNNNGTC 2 cut(s) 159, 234
EaeI YGGCCR 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 192
Eam1105I GACNNNNNGTC 2 cut(s) 159, 234
EarI CTCTTC 1 cut(s) 192
Ecl136II GAGCTC 1 cut(s) 502
Eco130I CCWWGG 3 cut(s) 18, 259, 278
Eco24I GRGCYC 1 cut(s) 504
Eco31I GGTCTC 1 cut(s) 209
Eco32I GATATC 2 cut(s) 209, 331
Eco47I GGWCC 1 cut(s) 286
Eco53kI GAGCTC 1 cut(s) 502
Eco88I CYCGRG 2 cut(s) 180, 398
EcoICRI GAGCTC 1 cut(s) 502
EcoO109I RGGNCCY 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 85
EcoRV GATATC 2 cut(s) 209, 331
EcoT14I CCWWGG 3 cut(s) 18, 259, 278
EcoT38I GRGCYC 1 cut(s) 504
EgeI GGCGCC 1 cut(s) 415
EheI GGCGCC 1 cut(s) 415
ErhI CCWWGG 3 cut(s) 18, 259, 278
FaeI CATG 6 cut(s) 79, 263, 282, 307, 377, 463
FaqI GGGAC 3 cut(s) 147, 264, 299
FatI CATG 6 cut(s) 75, 259, 278, 303, 373, 459
Fnu4HI GCNGC 2 cut(s) 424, 555
FokI GGATG 1 cut(s) 335
FriOI GRGCYC 1 cut(s) 504
Fsp4HI GCNGC 2 cut(s) 424, 555
FspBI CTAG 2 cut(s) 290, 299
GlaI GCGC 1 cut(s) 415
GluI GCNGC 2 cut(s) 424, 555
HaeII RGCGCY 1 cut(s) 417
HaeIII GGCC 3 cut(s) 17, 264, 474
HapII CCGG 2 cut(s) 114, 399
HhaI GCGC 1 cut(s) 416
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 6 cut(s) 79, 263, 282, 307, 377, 463
Hin6I GCGC 1 cut(s) 414
HinP1I GCGC 1 cut(s) 414
HincII GTYRAC 2 cut(s) 442, 526
HindII GTYRAC 2 cut(s) 442, 526
HindIII AAGCTT 1 cut(s) 448
HinfI GANTC 3 cut(s) 118, 154, 293
HpaII CCGG 2 cut(s) 114, 399
HphI GGTGA 2 cut(s) 197, 421
Hpy166II GTNNAC 4 cut(s) 139, 360, 442, 526
Hpy188III TCNNGA 4 cut(s) 140, 164, 212, 541
Hpy8I GTNNAC 4 cut(s) 139, 360, 442, 526
HpyAV CCTTC 2 cut(s) 371, 485
HpyCH4V TGCA 3 cut(s) 31, 111, 172
HpyF10VI GCNNNNNNNGC 4 cut(s) 304, 313, 413, 420
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 6 cut(s) 79, 263, 282, 307, 377, 463
HspAI GCGC 1 cut(s) 414
KasI GGCGCC 1 cut(s) 413
Kzo9I GATC 2 cut(s) 52, 93
Lsp1109I GCAGC 1 cut(s) 435
LweI GCATC 1 cut(s) 435
MaeI CTAG 2 cut(s) 290, 299
MaeIII GTNAC 2 cut(s) 337, 344
MalI GATC 2 cut(s) 54, 95
MbiI CCGCTC 1 cut(s) 569
MboI GATC 2 cut(s) 52, 93
MboII GAAGA 3 cut(s) 163, 209, 556
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 2 cut(s) 49, 504
MlsI TGGCCA 1 cut(s) 264
MluCI AATT 2 cut(s) 105, 239
MluNI TGGCCA 1 cut(s) 264
Mly113I GGCGCC 1 cut(s) 414
MlyI GAGTC 2 cut(s) 148, 287
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 3 cut(s) 176, 467, 508
Mox20I TGGCCA 1 cut(s) 264
MscI TGGCCA 1 cut(s) 264
MseI TTAA 2 cut(s) 243, 519
Msp20I TGGCCA 1 cut(s) 264
MspI CCGG 2 cut(s) 114, 399
MspR9I CCNGG 4 cut(s) 87, 115, 399, 400
MvaI CCWGG 1 cut(s) 87
MwoI GCNNNNNNNGC 4 cut(s) 304, 313, 413, 420
NarI GGCGCC 1 cut(s) 414
NciI CCSGG 3 cut(s) 115, 399, 400
NcoI CCATGG 2 cut(s) 259, 278
NdeII GATC 2 cut(s) 52, 93
NheI GCTAGC 1 cut(s) 298
NlaIII CATG 6 cut(s) 79, 263, 282, 307, 377, 463
NlaIV GGNNCC 3 cut(s) 48, 287, 415
NmuCI GTSAC 2 cut(s) 337, 344
PaeR7I CTCGAG 1 cut(s) 180
PfeI GAWTC 1 cut(s) 118
PkrI GCNGC 2 cut(s) 425, 556
PleI GAGTC 2 cut(s) 148, 287
PluTI GGCGCC 1 cut(s) 417
PpsI GAGTC 2 cut(s) 148, 287
PpuMI RGGWCCY 1 cut(s) 286
PsiI TTATAA 1 cut(s) 392
Psp124BI GAGCTC 1 cut(s) 504
Psp5II RGGWCCY 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 85
PspN4I GGNNCC 3 cut(s) 48, 287, 415
PspPI GGNCC 1 cut(s) 286
PspPPI RGGWCCY 1 cut(s) 286
PspXI VCTCGAGB 1 cut(s) 180
PsuI RGATCY 1 cut(s) 93
SacI GAGCTC 1 cut(s) 504
SaqAI TTAA 2 cut(s) 243, 519
SatI GCNGC 2 cut(s) 424, 555
Sau3AI GATC 2 cut(s) 52, 93
Sau96I GGNCC 1 cut(s) 286
SchI GAGTC 2 cut(s) 148, 287
ScrFI CCNGG 4 cut(s) 87, 115, 399, 400
SduI GDGCHC 2 cut(s) 49, 504
SfaNI GCATC 1 cut(s) 435
SfcI CTRYAG 1 cut(s) 418
SfoI GGCGCC 1 cut(s) 415
Sfr274I CTCGAG 1 cut(s) 180
SinI GGWCC 1 cut(s) 286
SlaI CTCGAG 1 cut(s) 180
SmaI CCCGGG 1 cut(s) 400
SmlI CTYRAG 1 cut(s) 180
SmoI CTYRAG 1 cut(s) 180
Sse9I AATT 2 cut(s) 105, 239
SsiI CCGC 2 cut(s) 555, 567
SspDI GGCGCC 1 cut(s) 413
SspMI CTAG 2 cut(s) 290, 299
SstI GAGCTC 1 cut(s) 504
StyD4I CCNGG 4 cut(s) 85, 113, 397, 398
StyI CCWWGG 3 cut(s) 18, 259, 278
TaqI TCGA 1 cut(s) 181
TasI AATT 2 cut(s) 105, 239
TauI GCSGC 1 cut(s) 557
TfiI GAWTC 1 cut(s) 118
Tru1I TTAA 2 cut(s) 243, 519
Tru9I TTAA 2 cut(s) 243, 519
TscAI CASTG 2 cut(s) 231, 415
TseFI GTSAC 2 cut(s) 337, 344
TseI GCWGC 1 cut(s) 423
Tsp45I GTSAC 2 cut(s) 337, 344
TspDTI ATGAA 1 cut(s) 390
TspMI CCCGGG 1 cut(s) 398
TspRI CASTG 2 cut(s) 231, 415
VpaK11BI GGWCC 1 cut(s) 286
XhoI CTCGAG 1 cut(s) 180
XmaI CCCGGG 1 cut(s) 398
XspI CTAG 2 cut(s) 290, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.